NO18G01090, NO18G01090 (gene) Nannochloropsis oceanica

Overview
NameNO18G01090
Unique NameNO18G01090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1478
Alignment locationchr18:384490..385967 +

Link to JBrowse

Properties
Property NameValue
DescriptionKinase phosphorylation domain protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:384490..385967 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019315Kinase_phosphorylation_domain
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Homology
BLAST of NO18G01090 vs. NCBI_GenBank
Match: EWM23320.1 (Kinase phosphorylation domain protein [Nannochloropsis gaditana])

HSP 1 Score: 276.2 bits (705), Expect = 1.500e-70
Identity = 139/179 (77.65%), Postives = 155/179 (86.59%), Query Frame = 0
Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAPAARHEHLPKGKSMVEREIERMKKEQAEGRGFEYEEDASHMH 180
            MSFGPKTGYRDGG RGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKA K      ED EAQR+RE+AE R+RDE+MINAALG+AP  QAVVE+ L+ASELKQLL +G SER D+  ERVEG+GAAPA RHEHLPKG SMVEREIERMK  QA+G  F+YE+DA+H++
Sbjct:   40 MSFGPKTGYRDGGTRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKAGKVKSGEAEDPEAQRQREVAEIRQRDEEMINAALGMAPKYQAVVESRLEASELKQLLGKGLSERDDLHGERVEGVGAAPAPRHEHLPKGLSMVEREIERMKSAQAQGVAFKYEDDATHLY 218          
BLAST of NO18G01090 vs. NCBI_GenBank
Match: EWM23322.1 (Kinase phosphorylation domain protein [Nannochloropsis gaditana])

HSP 1 Score: 276.2 bits (705), Expect = 1.500e-70
Identity = 139/179 (77.65%), Postives = 155/179 (86.59%), Query Frame = 0
Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAPAARHEHLPKGKSMVEREIERMKKEQAEGRGFEYEEDASHMH 180
            MSFGPKTGYRDGG RGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKA K      ED EAQR+RE+AE R+RDE+MINAALG+AP  QAVVE+ L+ASELKQLL +G SER D+  ERVEG+GAAPA RHEHLPKG SMVEREIERMK  QA+G  F+YE+DA+H++
Sbjct:   35 MSFGPKTGYRDGGTRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKAGKVKSGEAEDPEAQRQREVAEIRQRDEEMINAALGMAPKYQAVVESRLEASELKQLLGKGLSERDDLHGERVEGVGAAPAPRHEHLPKGLSMVEREIERMKSAQAQGVAFKYEDDATHLY 213          
BLAST of NO18G01090 vs. NCBI_GenBank
Match: EWM23321.1 (Kinase phosphorylation domain protein [Nannochloropsis gaditana])

HSP 1 Score: 163.3 bits (412), Expect = 1.400e-36
Identity = 87/126 (69.05%), Postives = 103/126 (81.75%), Query Frame = 0
Query:   54 MWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAPAARHEHLPKGKSMVEREIERMKKEQAEGRGFEYEEDASHMH 180
            MWYTKA K      ED EAQR+RE+AE R+RDE+MINAALG+AP  QAVVE+ L+ASELKQLL +G SER D+  ERVEG+GAAPA RHEHLPKG SMVEREIERMK  QA+G  F+YE+DA+H++
Sbjct:    1 MWYTKAGKVKSGEAEDPEAQRQREVAEIRQRDEEMINAALGMAPKYQAVVESRLEASELKQLLGKGLSERDDLHGERVEGVGAAPAPRHEHLPKGLSMVEREIERMKSAQAQGVAFKYEDDATHLY 126          
BLAST of NO18G01090 vs. NCBI_GenBank
Match: CBN79264.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 154.8 bits (390), Expect = 4.900e-34
Identity = 85/156 (54.49%), Postives = 110/156 (70.51%), Query Frame = 0
Query:    9 YRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGD-MDAERVEGLGAAPAARHEHLPKGKSMVEREIERMKKEQ 164
            YR GG RGGQD+FKWEDVK + +RE+YLGHSL APVGRWQ+GKDL W+   +K GE G + A AQ   E A  ++ DED++N ALGLAP +    +  L  ++ KQLL +G +  GD MD ERV GLGA PA  HEH+P   ++ ERE+ER+K+E+
Sbjct:    6 YRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWW---NKKGEGGADAARAQAEMEKARVKQLDEDLLNEALGLAPRKVRTQQLELSKADKKQLLEKGTTVDGDGMDTERVSGLGAGPAKLHEHIP-SLTLKERELERLKRER 157          
BLAST of NO18G01090 vs. NCBI_GenBank
Match: OQR85022.1 (T-complex protein 1 subunit zeta [Achlya hypogyna])

HSP 1 Score: 154.8 bits (390), Expect = 4.900e-34
Identity = 84/137 (61.31%), Postives = 102/137 (74.45%), Query Frame = 0
Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAA 138
            MSFG KT YR GG RGGQD+FKW+DVK++ YRE+YLGHSL APVGRW KGKDL WY        KGK D  A    E+A  R+RDED++N ALG+AP R+  V   LDA+E+K+LL RGA+ERG  DAER++G+GAA
Sbjct:    1 MSFG-KTNYRFGGTRGGQDQFKWDDVKNDKYRENYLGHSLNAPVGRWAKGKDLTWYA-------KGKTDQNAALAEEIALARQRDEDLMNEALGIAPKRRREV-GGLDANEMKELLKRGATERGAEDAERIQGVGAA 128          
BLAST of NO18G01090 vs. NCBI_GenBank
Match: XP_009517846.1 (hypothetical protein PHYSODRAFT_263951 [Phytophthora sojae] >EGZ30571.1 hypothetical protein PHYSODRAFT_263951 [Phytophthora sojae])

HSP 1 Score: 154.1 bits (388), Expect = 8.400e-34
Identity = 91/156 (58.33%), Postives = 112/156 (71.79%), Query Frame = 0
Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAP--AARHEHLPKGKSMVER 155
            MSFG KT YR GG RGG D+FKWEDVK++ YRE+YLGHS++APVGRWQKGKDL WY K +K      + AEA  + ELA  ++RDED++N ALG+AP R+      L ASE+K+LL RG +ER  MD ERVEGLGAAP  AA     PK +++ ER
Sbjct:    1 MSFG-KTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKTNK-----SQRAEA-LQAELALAKQRDEDLMNEALGIAPKRRHEPAEGLSASEMKELLKRGEAERDGMDVERVEGLGAAPVEAAGFVTAPK-RTLAER 148          
BLAST of NO18G01090 vs. NCBI_GenBank
Match: POM67509.1 (T-complex protein 1 subunit zeta [Phytophthora palmivora var. palmivora])

HSP 1 Score: 154.1 bits (388), Expect = 8.400e-34
Identity = 92/167 (55.09%), Postives = 119/167 (71.26%), Query Frame = 0
Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAP--AARHEHLPKGKSMVEREIERMKKEQAE 166
            MSFG KT YR GG RGG D+FKWEDVK++ YRE+YLGHS++APVGRWQKGKDL WY KA+K      + AEA  + ELA  ++RDED++N ALG+AP ++      L ASE+K+LL RG +ER  MD ERVEGLGAAP  A   E  PK +++ ER  +++   +A+
Sbjct:    1 MSFG-KTNYRIGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKANK-----SQRAEA-LQAELALAKQRDEDLMNEALGIAPKKRHEPREGLSASEMKELLKRGEAERDGMDVERVEGLGAAPVEAEGFETGPK-RTLAERYKDQLASGKAD 159          
BLAST of NO18G01090 vs. NCBI_GenBank
Match: ETL28112.1 (hypothetical protein L916_18460 [Phytophthora parasitica] >ETP04252.1 hypothetical protein F441_18948 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 153.7 bits (387), Expect = 1.100e-33
Identity = 92/167 (55.09%), Postives = 119/167 (71.26%), Query Frame = 0
Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAP--AARHEHLPKGKSMVEREIERMKKEQAE 166
            MSFG KT YR GG RGG D+FKWEDVK++ YRE+YLGHS++APVGRWQKGKDL WY KA+K      + AEA  + ELA  ++RDED++N ALG+AP ++      L ASE+K+LL RG +ER  MD ERVEGLGAAP  A   E  PK +++ ER  +++   +A+
Sbjct:    1 MSFG-KTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKANK-----SQRAEA-LQAELALAKQRDEDLMNEALGIAPRKRREPAEGLSASEMKELLKRGEAERDGMDVERVEGLGAAPVEAEGFETGPK-RTLAERYKDQLVSGKAD 159          
BLAST of NO18G01090 vs. NCBI_GenBank
Match: ETL81349.1 (hypothetical protein L917_18288 [Phytophthora parasitica])

HSP 1 Score: 153.7 bits (387), Expect = 1.100e-33
Identity = 92/167 (55.09%), Postives = 119/167 (71.26%), Query Frame = 0
Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAP--AARHEHLPKGKSMVEREIERMKKEQAE 166
            MSFG KT YR GG RGG D+FKWEDVK++ YRE+YLGHS++APVGRWQKGKDL WY KA+K      + AEA  + ELA  ++RDED++N ALG+AP ++      L ASE+K+LL RG +ER  MD ERVEGLGAAP  A   E  PK +++ ER  +++   +A+
Sbjct:    1 MSFG-KTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKANK-----SQRAEA-LQAELALAKQRDEDLMNEALGIAPRKRREPAEGLSASEMKELLKRGEAERDGMDVERVEGLGAAPVEAEGFETGPK-RTLAERYKDQLVSGKAD 159          
BLAST of NO18G01090 vs. NCBI_GenBank
Match: ETM34561.1 (hypothetical protein L914_18374 [Phytophthora parasitica])

HSP 1 Score: 153.7 bits (387), Expect = 1.100e-33
Identity = 92/167 (55.09%), Postives = 119/167 (71.26%), Query Frame = 0
Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAP--AARHEHLPKGKSMVEREIERMKKEQAE 166
            MSFG KT YR GG RGG D+FKWEDVK++ YRE+YLGHS++APVGRWQKGKDL WY KA+K      + AEA  + ELA  ++RDED++N ALG+AP ++      L ASE+K+LL RG +ER  MD ERVEGLGAAP  A   E  PK +++ ER  +++   +A+
Sbjct:    1 MSFG-KTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKANK-----SQRAEA-LQAELALAKQRDEDLMNEALGIAPRKRREPAEGLSASEMKELLKRGEAERDGMDVERVEGLGAAPVEAEGFETGPK-RTLAERYKDQLVSGKAD 159          
The following BLAST results are available for this feature:
BLAST of NO18G01090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23320.11.500e-7077.65Kinase phosphorylation domain protein [Nannochloro... [more]
EWM23322.11.500e-7077.65Kinase phosphorylation domain protein [Nannochloro... [more]
EWM23321.11.400e-3669.05Kinase phosphorylation domain protein [Nannochloro... [more]
CBN79264.14.900e-3454.49conserved unknown protein [Ectocarpus siliculosus][more]
OQR85022.14.900e-3461.31T-complex protein 1 subunit zeta [Achlya hypogyna][more]
XP_009517846.18.400e-3458.33hypothetical protein PHYSODRAFT_263951 [Phytophtho... [more]
POM67509.18.400e-3455.09T-complex protein 1 subunit zeta [Phytophthora pal... [more]
ETL28112.11.100e-3355.09hypothetical protein L916_18460 [Phytophthora para... [more]
ETL81349.11.100e-3355.09hypothetical protein L917_18288 [Phytophthora para... [more]
ETM34561.11.100e-3355.09hypothetical protein L914_18374 [Phytophthora para... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003964NSK003964Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01090.1NO18G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609074gene_9534Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100053g24gene7131Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01090.1NO18G01090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01090 ID=NO18G01090|Name=NO18G01090|organism=Nannochloropsis oceanica|type=gene|length=1478bp
AGCTAGCTGGACTGAATCAAGGACAGCAAGCATGTCGTTCGGGCCGAAAA
CGGGCTACCGCGACGGCGGCAATAGAGGCGGACAGGACCGATTCAAGTGG
GAGGATGTGAAAGACGgtaggcgtggtgcttgattgggtgggtggggtga
ggaatgatcagcatggacatgactcatatctctattttcctccttgcccg
ttctccttccctccttccccgctccttccaaccccttcgtagAACACTAC
CGTGAGCATTATTTGGGACACAGCCTCAAGGCCCCCGTCGGACGCTGGCA
GAAAGGCAAAGACCTAATGTGGTACACCAAAGCAGACAAAGGAGGGGAGA
AAGGGAAAGAGGATGCGGAGGCGCAACGACGGAGGGAGTTAGCGGAGTTT
CGACGACGGGACGAAGACATGATTAATGCTGCCTTGGGGTTGGCACCGGC
ACGTCAGGCAGTAGTAGAGACTACACTCGATGCAAGTGAGCTGAAACAGC
TGCTGGCAAGGGGGGCGAGCGAGAGGGGGGATATGGATGCAGAGCGCGTG
GAGGGTCTCGGAGCAGCGCCTGCAGCGAGGCACGAGCACTTGCCCAAGGG
AAAGAGTATGGTTGAGCGAGAGATTGAAAGGATGAAGAAAGAACAGGCGG
AGGGGAGAGGTTTTGAATACGAGGAGGATGCGAGTCATATGCATGAGGAA
GAAGGGAACGATGTGGTGAAGGACGGAGGGGGAAAGAGGAAGAAGAATAG
AGATGAAGACAAGGAGAAGAAGGAGAAGAAAAAGAGGAAGAAGGAGGAAA
AGAAAAAGGAGGAAAAGAAGAAAAAGAAGGTGGTGAAAAAGGAGCGAAAG
AAGGCAAAGAAAGCGATGCGCAAGGAAGAAGATGATGAGGGGGCAGGAAG
GGAGGGAGGTCGTGGCCAAGGACGCTCCGAGAGGGGTCGAAGCTCGAGCG
ACAACAGCTGCAGGAGCAGCAGCGCCGGCCCCGAGCATCGCATGCGACAC
GTATCGATAGACAAAACTCACCATGATGGTGCAGAGGAGAGGCAGAGGGA
GGCGGGGCGCTGTGGGGGAAAACGCCCTGAAAGAGAGAGAGGCCGAAGCG
CCAGCCGCAGCAGTAGGAGCGCCAGTCCCGATGACCGGAAGCGACGGCGA
CTACGGACAGAGAGCATATCACGCTCCAGGTCCAGACCTCGTAATTCTTA
TGTCCGTGAGCAGGGCCGCCGCCGCGGGAGATAATCATGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGG
GGGTCAAGAGAAAAAAATGGCAAGTAAATGGAAGGAAACCTGTACAAAGA
AAGCCGCGAAACGTTAACGGGAGAACGTGAACAATTCTCCGAGAAAGAAG
GGCAAAAAGGAAGAAGAACGGCACATGCACGACCCAGCCATTCAATGTGT
CGTGGGAACTCTCTGACCATTACATTTC
back to top

protein sequence of NO18G01090.1

>NO18G01090.1-protein ID=NO18G01090.1-protein|Name=NO18G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKG
KDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQ
AVVETTLDASELKQLLARGASERGDMDAERVEGLGAAPAARHEHLPKGKS
MVEREIERMKKEQAEGRGFEYEEDASHMHEEEGNDVVKDGGGKRKKNRDE
DKEKKEKKKRKKEEKKKEEKKKKKVVKKERKKAKKAMRKEEDDEGAGREG
GRGQGRSERGRSSSDNSCRSSSAGPEHRMRHVSIDKTHHDGAEERQREAG
RCGGKRPERERGRSASRSSRSASPDDRKRRRLRTESISRSRSRPRNSYVR
EQGRRRGR*
back to top
Synonyms
Publications