NO18G01080, NO18G01080 (gene) Nannochloropsis oceanica

Overview
NameNO18G01080
Unique NameNO18G01080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2029
Alignment locationchr18:381920..383948 -

Link to JBrowse

Properties
Property NameValue
DescriptionProtein root UVB sensitive 2, chloroplastic
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:381920..383948 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006968RUS_fam
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO18G01080 vs. NCBI_GenBank
Match: XP_008615615.1 (hypothetical protein SDRG_11358 [Saprolegnia diclina VS20] >EQC30877.1 hypothetical protein SDRG_11358 [Saprolegnia diclina VS20])

HSP 1 Score: 246.9 bits (629), Expect = 1.500e-61
Identity = 146/323 (45.20%), Postives = 204/323 (63.16%), Query Frame = 0
Query:  128 LPRGYPRSVQKGYAEYVKLQMTASLASSAIGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFASVVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSFVHISCNYLSLRHVCLNTINAERMELIMQHYVLTGRIPAPGDISPIERFMTPAIYDTVAPSALVARLPSLRMGRHLDEVASLEQLPRLAR-LFEKEKYVLNAKGRRGDGTATVDVLMKEEANVHDVLKACVHS 450
            LPR Y  S    Y  Y K Q   S+A +A GVLS QSLLYA+GL +GAIP+AAALNW+IKDG+GQ GG++FAS+VN RFD++PKRW++V+ +++D +   E+L PL P  FL +A++ANV KN+ +LSASA+RA  H SFAK ENLADITAKAGSQ I +SILGT LGIA+S  +G++   +A     LS +++   Y SLR V L T+N +R+  I+  ++    IP P  +S  ERF+          S L++         HLD  + L+ +   +  ++  EKY+L+         ATV +LM+  A   +VL A +H+
Sbjct:   83 LPRDYKTSTTHDYLPYAKWQFVGSVAGTACGVLSMQSLLYAIGLQSGAIPMAAALNWVIKDGLGQFGGVLFASLVNHRFDSDPKRWRVVSALAMDAATLTEILTPLCPAYFLPMAAMANVAKNISWLSASATRAGFHYSFAKTENLADITAKAGSQSIASSILGTALGIAISPIIGTTTSHVAGAFFVLSSINLWSLYNSLRVVSLRTLNQQRLNHILDAFIANAAIPTPDVVSQQERFV----------SNLLSGKACHLQHSHLDVASRLDAVYTPSTVIWPGEKYLLHVDVDATTSHATVHLLMEASATSDEVLAAHLHA 395          
BLAST of NO18G01080 vs. NCBI_GenBank
Match: OQS07661.1 (hypothetical protein THRCLA_20095, partial [Thraustotheca clavata])

HSP 1 Score: 242.7 bits (618), Expect = 2.900e-60
Identity = 141/310 (45.48%), Postives = 204/310 (65.81%), Query Frame = 0
Query:  145 KLQMTASLASSAIGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFASVVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSFVHISCNYLSLRHVCLNTINAERMELIMQHYVLTGRIPAPGDISPIERFMTPAIYDTVAPSALVARLPSLRMGRHLDEVASLEQLPRLARLFEKEKYVLNAKGRRGDGTATVDVLMKEEANVHDVLKACVHSYYVRK 455
            K Q   S+A +A GVLS QSLLYA+GL +GAIP+AAALNW+IKDG+GQ GG++FAS+VN RFD++PKRW+MV+T+++D +   E+L PL P  FL +A++ANV KN+ +LSASA+RA  H SFAK ENLADITAKAGSQ I +SI+GT +GIA+S  +G++   +      LS ++I   Y SL+ + L T+N +R+  ++ HY++   IP+P DIS  E F    I + ++  +       L M   LD+V +   L     ++  EKY+L+A     +G   V +L++  A+  DV  A +H+  V+K
Sbjct:    2 KWQFVGSVAGTASGVLSMQSLLYAIGLQSGAIPMAAALNWVIKDGLGQFGGVLFASLVNHRFDSDPKRWRMVSTLAMDAATLTEILTPLCPAYFLPMAAMANVAKNISWLSASATRAGFHYSFAKNENLADITAKAGSQSIASSIIGTAVGIAISPVIGTTTSHVVGAFFVLSSINIWSLYNSLKVISLRTLNQQRLNHVLDHYLVHKSIPSPQDISEKEVF----ISNLISGRSCSFTKSELTMASRLDQVYTPSTL-----IYPNEKYLLHA--TESNGKLLVHLLIETTASNDDVFMAQLHARIVQK 300          
BLAST of NO18G01080 vs. NCBI_GenBank
Match: XP_008878095.1 (hypothetical protein H310_12695 [Aphanomyces invadans] >ETV93260.1 hypothetical protein H310_12695 [Aphanomyces invadans])

HSP 1 Score: 241.1 bits (614), Expect = 8.300e-60
Identity = 165/398 (41.46%), Postives = 233/398 (58.54%), Query Frame = 0
Query:  113 VLSLRLLAEDGLRALLPRGYPRSVQKGYAEYVKLQMTASLASSAIGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFASVVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSFVHISCNYLSLRHVCLNTINAERMELIMQHY-----------VLTGRIPAPGDISPIERFMTPAIYDTVAPSALVARLPSLRMGRHLDEVASLEQLPRLARLFEKEKYVL----NAKGRRGDGTATVDVLMKEEANVHDVLKACVHSYYVRKEAGREGGWKAPRVQSAWARLMEKKEVERSDTWLIDLVESTH 496
            + ++ LL ED     LPR +  S    Y  YV+ Q  AS+A S  GVLS QSLL+A+GL +GAIP+AAALNW+IKDG+GQ GG++FAS+VN RFDA+PKRW+MV+  ++D +  +E+L PL P  FL +A+ ANV KN+ +LS+SA+RA  H SFA++ENLADITAKAGSQ I +SI+GT LGIA+S  +GS+   +A     LS +H+   Y SL  V L+T+N +R+ L++ HY                I +P ++S  E F+    + +  PS    +  S+ +   LD++  LE L      F  E+Y+L    +   RR  G   V +L+  +A   DVLK   H + VR     E G  +P    A A    + +V R+       V+STH
Sbjct:   70 IRNIPLLLED---LFLPRDHTTSTSPDYLPYVRYQFIASVAGSTCGVLSMQSLLFAIGLQSGAIPMAAALNWVIKDGLGQFGGVLFASLVNHRFDADPKRWRMVSAFAMDAATLVEILTPLCPAYFLPMAATANVAKNISWLSSSATRAGFHYSFAQKENLADITAKAGSQSIASSIVGTALGIAISPIVGSATANVAAAFGVLSAIHLVSIYKSLSIVALHTLNQQRLHLVIDHYWQGHDRSTTHLANENPILSPSEVSANEAFVLR--FQSGYPSRF--QRTSVALSSRLDKL-RLETLD----TFANERYLLQVDDDVASRR--GARVVHLLLHADATSVDVLKG--HLHLVRLRMLLEDGHLSP----AAAMEQSRHDVHRA-------VQSTH 440          
BLAST of NO18G01080 vs. NCBI_GenBank
Match: OWZ03885.1 (putative mitochondrial protein [Phytophthora megakarya])

HSP 1 Score: 238.0 bits (606), Expect = 7.100e-59
Identity = 137/299 (45.82%), Postives = 197/299 (65.89%), Query Frame = 0
Query:  163 QSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFASVVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSFVHISCNYLSLRHVCLNTINAERMELIMQHYVLTGRIPAPGDISPIERFMTPAIYDTVAPSALVARLPSLRMGRHLDEVASLEQLPR--------LARLFEKEKYVLNAKGRRGDGTATVDVLMKEEANVHDVLKACVHSYYVR 454
            QSLLYA+GLGAGAIP AAA+NW++KDG+GQ GG++FAS+VN+R+DA+PKRW++ ++++LD+S   E+L PLAPGSFLAIASLANV KNV +LSASA+RA  HNSFA RENLAD+TAKAGSQ I +SI GTGLGI +S   GSS + +      LS VH+   Y S+  V L T+N +R+ +++ H+     + +P +   I    T    +   P+ +     +L     + E A+L+QL          + + +  EKY+LN K  +  G   +D+ ++E+A  HD L+A +H+  ++
Sbjct:    2 QSLLYAVGLGAGAIPTAAAVNWVLKDGLGQFGGVLFASLVNNRYDADPKRWRVASSLALDVSVLGEILTPLAPGSFLAIASLANVAKNVAWLSASATRAGFHNSFAIRENLADVTAKAGSQAIASSIFGTGLGILISQWTGSSTLNVMAAFTVLSTVHMISTYKSVDCVQLRTLNCQRLHIVITHF-----LRSPPEAREILNVNTVGEREVFIPT-MFPGYQTLHKNSVIYENATLDQLSHGTPQILGCIKKFYAAEKYLLNLK-EKERGRHRIDLALEEQATSHDALRAHLHAVLIQ 293          
BLAST of NO18G01080 vs. NCBI_GenBank
Match: XP_009529200.1 (hypothetical protein PHYSODRAFT_546234 [Phytophthora sojae] >EGZ15451.1 hypothetical protein PHYSODRAFT_546234 [Phytophthora sojae])

HSP 1 Score: 235.3 bits (599), Expect = 4.600e-58
Identity = 127/216 (58.80%), Postives = 162/216 (75.00%), Query Frame = 0
Query:  128 LPRGYPRSVQKGYAEYVKLQMTASLASSAIGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFASVVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSFVHISCNYLSLRHVCLNTINAERMEL 344
            LP+    S+ K Y  Y K     S+AS A  VLS QSLLYA+GLGAGAIP AAA+NW++KDG+GQ GG++FAS+VN+R+DA+PKRW++ ++++LD+S   E+L PLAPGSFLAIASLANV KNV +LSASA+RA  HNSFA RENLAD+TAKAGSQ I +SI GTGLGI +S   GSS + +A   A LS VH+   Y S+  V L T+N +R+ +
Sbjct:  116 LPKDARASLTKDYFPYAKWSFVGSVASCAASVLSMQSLLYAIGLGAGAIPTAAAVNWVLKDGLGQFGGVLFASIVNNRYDADPKRWRVASSVALDVSVLGEILTPLAPGSFLAIASLANVAKNVAWLSASATRAGFHNSFAIRENLADVTAKAGSQAIASSIFGTGLGILISQFTGSSTLNVAAAFAVLSTVHLISTYKSVDCVQLRTLNCQRLHI 331          
BLAST of NO18G01080 vs. NCBI_GenBank
Match: POM68151.1 (Hypothetical protein PHPALM_15725 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 234.2 bits (596), Expect = 1.000e-57
Identity = 140/287 (48.78%), Postives = 189/287 (65.85%), Query Frame = 0
Query:  128 LPRGYPRSVQKGYAEYVKLQMTASLASSAIGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFASVVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSFVHISCNYLSLRHVCLNTINAERMELIMQHYVLTGRIPAPGDISPIERFMTPAIYDTVAPSALVARLPSLRMGRHLDEVASLEQLPRLARLFEKEKY 415
            LP+    ++ K Y  Y K     S+AS A  VLS QSLLYA+GLGAGAIP AAA+NW++KDG+GQ GG++FASVVN+R+DA+PKRW++ ++++LD+S   E+L PLAPGSFLAIASLANV KNV +LSASA+RA  HNSFA RENLAD+TAKAGSQ I +SI GTGLGI +S   GSS + +      LS +H+   Y S+  V L T+N +R+ ++  H+     + +P D   I +  T       +  AL A L ++ +   L++V +    P  A +   EKY
Sbjct:  105 LPKDAHVALTKDYFPYAKWTFVGSVASCASSVLSMQSLLYAVGLGAGAIPTAAAVNWVLKDGLGQFGGVLFASVVNNRYDADPKRWRVASSMALDVSVLGEILTPLAPGSFLAIASLANVAKNVAWLSASATRAGFHNSFAIRENLADVTAKAGSQAIASSIFGTGLGILISQWTGSSTLNVVAAFTVLSTLHMISTYKSVDCVQLRTLNCQRLHIVTTHF-----LQSPPDAREIPKHAT-------SQDALRAHLHAVLIQLALEDVRT---TPMDAWVLVSEKY 376          
BLAST of NO18G01080 vs. NCBI_GenBank
Match: XP_012202581.1 (hypothetical protein SPRG_20489 [Saprolegnia parasitica CBS 223.65] >KDO26689.1 hypothetical protein SPRG_20489 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 226.9 bits (577), Expect = 1.600e-55
Identity = 140/325 (43.08%), Postives = 195/325 (60.00%), Query Frame = 0
Query:  128 LPRGYPRSVQKGYAEYVKLQMTASLASSAIGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFASVVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSW---MALAPICAGLSFVHISCNYLSLRHVCLNTINAERMELIMQHYVLTGRIPAPGDISPIERFMTPAIYDTVAPSALVARLPSLRMGRHLDEVASLEQLPRLARLFEKEKYVLNAKGRRGDGTATVDVLMKEEANVHDVLKACVHS 450
            LPR Y  S    Y  Y K Q   S+A +A GVLS QSLLYA+GL +GAIP+AAALNW+IKDG+GQ GG++FAS+VN RFD++PKRW++V+ +++D +   E+L PL P  FL +A++ANV KN+ +LSASA+RA  H SFAK ENLADITAKAGSQ I             +  L   W   +A A     LS +++   Y SLR V L T+N +R+  I+  ++ T  IP P  +S  ERF++    + V+  A   +   L +   LD V +   +     ++  EKY+L+A        ATV +L++  A   DVL A +H+
Sbjct:   84 LPRDYQTSTTHDYLPYAKWQFVGSVAGTACGVLSMQSLLYAIGLQSGAIPMAAALNWVIKDGLGQFGGVLFASLVNHRFDSDPKRWRVVSALAMDAATLTEILTPLCPAYFLPMAAMANVAKNISWLSASATRAGFHYSFAKTENLADITAKAGSQSIAHG--------GRNCDLADHWHDHVARAGAFFVLSSINLWSLYNSLRVVSLRTLNQQRLNHILDAFIATAAIPTPDTVSDQERFVS----NLVSGKACHLQHSQLEVASRLDAVYTPSTV-----VWPSEKYLLHADVDATTAHATVHLLIEASATSQDVLAAHLHA 391          
BLAST of NO18G01080 vs. NCBI_GenBank
Match: GAX95615.1 (Hypothetical protein PINS_003499 [Pythium insidiosum])

HSP 1 Score: 224.2 bits (570), Expect = 1.100e-54
Identity = 146/349 (41.83%), Postives = 204/349 (58.45%), Query Frame = 0
Query:  128 LPRGYPRSVQKGYAEYVKLQMTASLASSAIGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFASVVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSFVHISCNYLSLRH---VCLNTINAERMELIMQHYVLTGRIPAPGDISPIERFMTPAIYDTVAPSALVARLPSLRMGRHLDEVASLEQLPRLARLFEKEKYVLNAKGRRGDGTATVDVLMKEEANVHDVLKACVHSYYV--RKEAGREGGWKAPRVQSAW 472
            LPR + RSV   Y  Y K     ++AS+A GVLS QSLLYA+GLGAG+IP AAA+NW++KDG+GQ GG++FAS+VN+R+DA+PKRW++ + +SLDL+  +E+L PL P  FL +ASL NV KN+ +LSASA+RA  HNSFA RENLAD+TAKAGSQ I +SI+GTGLGIA+S+  G+S   +      LS VH    Y +L +   V    I AER + +            P  +S  +     +I +  A  A V+               S  +L RL   +  EKY+LN    + +    +D+ ++E A   D ++A + +  V  R E       +A   +S W
Sbjct:  142 LPRDFRRSVTPDYFPYAKWYFVGTVASAASGVLSMQSLLYAIGLGAGSIPTAAAINWVLKDGLGQFGGVMFASIVNNRYDADPKRWRVASALSLDLAGLIEILTPLFPAYFLPMASLGNVAKNISWLSASATRAGFHNSFAIRENLADLTAKAGSQAIASSIIGTGLGIAISSVTGASTTHVLGAFVALSAVHQFSVYRALAYGKTVPHQDIVAEREQFM------------PTLLSGYQSLYRRSIINGDASLAQVSS-------------NSPHELLRLKHFYSHEKYLLNLSKDKSE-KFRIDIALEESATSADAMRAHLQALMVQRRLETDESSAPQAVMERSEW 464          
BLAST of NO18G01080 vs. NCBI_GenBank
Match: XP_004346203.2 (hypothetical protein CAOG_05530 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 222.6 bits (566), Expect = 3.100e-54
Identity = 119/257 (46.30%), Postives = 175/257 (68.09%), Query Frame = 0
Query:  124 LRALLPRGYPRSVQKGYAEYVKLQMTASLASSAIGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFASVVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSFVHISCNYLSLRHVCLNTINAERMELIMQHYVLTGRIPAPGDISPIER--FMTPAIYDTVAPS 379
            + A LP+GYP SV   Y  Y + Q   S+  +  GVLSTQ+LLYA+GLGAGAIPLA ALNWI+KDG+GQ+GG+++++ ++ +FD++PKR +  +  +L  S  LE+L PLAPG FL +AS++N+GKN+ +L+AS++RA +HNS   R+NL D+T KAGSQ I TS++GTGLGIA++  +G+  +A+      LS V++  NY S   V + T+N +R E +  H++L  R  A  D +  ++  F TP  Y  + PS
Sbjct:  331 IEAFLPKGYPHSVTPNYMGYSRWQAVQSVTGTMTGVLSTQALLYAVGLGAGAIPLAGALNWIVKDGLGQLGGVVYSTFISSKFDSDPKRHRFWSNAALQASTLLEILTPLAPGMFLFLASVSNIGKNISWLAASSTRAQMHNSLTLRDNLGDVTGKAGSQAIATSLIGTGLGIAIAPFVGTDPIAVLLAFLPLSIVNMVSNYRSNTIVHMRTLNVQRAERLFMHFLLHNR-AALIDAAAADKMAFSTPMQYQLLTPS 586          
BLAST of NO18G01080 vs. NCBI_GenBank
Match: KJE95000.1 (hypothetical protein CAOG_005530 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 222.6 bits (566), Expect = 3.100e-54
Identity = 119/257 (46.30%), Postives = 175/257 (68.09%), Query Frame = 0
Query:  124 LRALLPRGYPRSVQKGYAEYVKLQMTASLASSAIGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFASVVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSFVHISCNYLSLRHVCLNTINAERMELIMQHYVLTGRIPAPGDISPIER--FMTPAIYDTVAPS 379
            + A LP+GYP SV   Y  Y + Q   S+  +  GVLSTQ+LLYA+GLGAGAIPLA ALNWI+KDG+GQ+GG+++++ ++ +FD++PKR +  +  +L  S  LE+L PLAPG FL +AS++N+GKN+ +L+AS++RA +HNS   R+NL D+T KAGSQ I TS++GTGLGIA++  +G+  +A+      LS V++  NY S   V + T+N +R E +  H++L  R  A  D +  ++  F TP  Y  + PS
Sbjct:  324 IEAFLPKGYPHSVTPNYMGYSRWQAVQSVTGTMTGVLSTQALLYAVGLGAGAIPLAGALNWIVKDGLGQLGGVVYSTFISSKFDSDPKRHRFWSNAALQASTLLEILTPLAPGMFLFLASVSNIGKNISWLAASSTRAQMHNSLTLRDNLGDVTGKAGSQAIATSLIGTGLGIAIAPFVGTDPIAVLLAFLPLSIVNMVSNYRSNTIVHMRTLNVQRAERLFMHFLLHNR-AALIDAAAADKMAFSTPMQYQLLTPS 579          
The following BLAST results are available for this feature:
BLAST of NO18G01080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_008615615.11.500e-6145.20hypothetical protein SDRG_11358 [Saprolegnia dicli... [more]
OQS07661.12.900e-6045.48hypothetical protein THRCLA_20095, partial [Thraus... [more]
XP_008878095.18.300e-6041.46hypothetical protein H310_12695 [Aphanomyces invad... [more]
OWZ03885.17.100e-5945.82putative mitochondrial protein [Phytophthora megak... [more]
XP_009529200.14.600e-5858.80hypothetical protein PHYSODRAFT_546234 [Phytophtho... [more]
POM68151.11.000e-5748.78Hypothetical protein PHPALM_15725 [Phytophthora pa... [more]
XP_012202581.11.600e-5543.08hypothetical protein SPRG_20489 [Saprolegnia paras... [more]
GAX95615.11.100e-5441.83Hypothetical protein PINS_003499 [Pythium insidios... [more]
XP_004346203.23.100e-5446.30hypothetical protein CAOG_05530 [Capsaspora owczar... [more]
KJE95000.13.100e-5446.30hypothetical protein CAOG_005530 [Capsaspora owcza... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003963NSK003963Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01080.1NO18G01080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533736gene_9535Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100053g25gene7132Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01080.1NO18G01080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01080 ID=NO18G01080|Name=NO18G01080|organism=Nannochloropsis oceanica|type=gene|length=2029bp
ATGCTGGGAGGAACGCGGCTGCGGCGTCTAGCCCTGCAGCACAGCAGTCC
GTGTCGCAGGCCACATCTTTTGCCAGCACCCCCACCTCTCCTTCGCCTCC
CGCATCGTTTGGCTGCCTCCTCGTCCACCCCACCCACTCCCCCTTCCTCC
ACCGACAAGCTTGTGGCCAAGCAAATCATGACAGACCGGGCAGGCTACCG
TGAGACGCTGTACTATGCGGCCGTGCCCTCGTCTTCGATGGCCGAGAAAT
CCAAAGACAAGGAAACGGAGGAGAGCACCACCACTAGCAGCACCACAAAT
AGCAAGGCATATCACCGTATCGACCCTCCCCCCGAAGTCCTTTCCCTCCG
CCTTCTGGCCGAAGACGGCCTCCGCGCCTTGCTTCCAAGAGGCTACCCAC
GCTCGGTCCAAAAAGGGTACGCAGAATATGTCAAACTTCAAATGACAGCT
TCCCTGGCCAGCTCCGCCATTGGTGTGCTCTCCACTCAATCCCTCCTCTA
CGCCATGGGCCTGGGCGCCGGCGCCATCCCCCTCGCCGCGGCCCTTAACT
GGATCATAAAAGACGGGATCGGACAAGTCGGCGGCATCATATTCGCCAGT
GTCGTGAACGACCGATTCGACGCGAATCCCAAACGCTGGAAAATGGTCGC
CACGATTTCCCTTGACCTCTCCTGCGCACTCGAGCTCCTTGCGCCTCTCG
CCCCAGGGTCCTTCCTCGCCATCGCCTCCCTCGCCAACGTCGGCAAAAAC
GTATGTTTCCTCTCCGCCTCCGCCTCGCGCGCGGCCATCCACAACTCCTT
CGCCAAACGGGAGAATCTCGCCGACATCACCGCAAAAGCTGGTTCTCAAT
TCATAGTCACTTCAATCCTCGGCACTGGTCTGGGTATCGCCCTCTCCACC
GCACTAGGCTCTTCCTGGATGGCGCTCGCTCCCATCTGTGCAGGGCTGTC
TTTTGTCCACATTTCTTGTAACTACCTATCCCTACGCCACGTTTGCCTCA
ACACAATCAACGCCGAGAGGATGGAGTTGATCATGCAGCACTACGTCCTC
ACAGGCCGCATCCCCGCCCCGGGCGACATATCTCCAATCGAACGGTTTAT
GACCCCCGCCATCTATGACACAGTGGCCCCTTCCGCATTAGTGGCGCGCT
TGCCTTCCTTGAGGATGGGGAGGCACTTAGACGAGGTGGCAAGCCTTGAG
CAGCTGCCAAGGTTGGCCCGGTTGTTCGAAAAGGAGAAATATGTTTTGAA
TGCGAAGGGAAGGAGGGGGGATGGGACGGCGACCGTTGATGTGTTGATGA
AGGAAGAGGCAAATGTCCACGACGTGTTGAAGGCGTGCGTGCATTCGTAC
TACGTCAGAAAGGAGGCAGGGAGGGAGGGAGGGTGGAAGGCCCCTCGGGT
GCAGTCGGCGTGGGCGAGGTTGATGGAGAAGAAGGAGGTGGAACGGTCAG
ATACGTGGCTCATTGACCTCGTGGAAAGCACGCATAAAACATTGTACCGA
CCATCGTCGGGGGCTGGAGGGGCAAGGGAGGGAGGGAGGGAGGATGGGAG
GGGGAAGCATTTGACTATGGTGGATGATATTGTGGGGCAGTTGACGCGGG
CTGGGTGGTTGACGGACAGTGTGTTTTTCCCACATACCCAAAATAGGATT
AGCTTTGAAGGGGGCGCGATTCAAGGAGTGCCCTTGTCGTCATCTGACAG
CAATAAAAAGGGAGCATGAAGGTGTAAGAATGTCGGATAGTGGGGCAGTG
GACGGGTAGTGGTAGTGTCGTGTTGTCTGCAATCACCTTCGGGTTCGACG
GGGCCTCCATCTCGATGTCGATTTAAGAGAAGGGTGAGGGGGAAGAAAGC
ACAAGCCACTCAAGTGTGTCAATAGGTCGATAAAGGAATGTGTAAAAGTA
GACGGAGGTGGCGAGAGTCGTCGAGCACAAGCGCACGCATGGCGCATCTG
GACACGAGGCAATAAACGCATCTTTAAAAAGATTAGCATCAATAGGCGAC
AGATTCCCAAAATCCATTTCACTTTGTAT
back to top

protein sequence of NO18G01080.1

>NO18G01080.1-protein ID=NO18G01080.1-protein|Name=NO18G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MLGGTRLRRLALQHSSPCRRPHLLPAPPPLLRLPHRLAASSSTPPTPPSS
TDKLVAKQIMTDRAGYRETLYYAAVPSSSMAEKSKDKETEESTTTSSTTN
SKAYHRIDPPPEVLSLRLLAEDGLRALLPRGYPRSVQKGYAEYVKLQMTA
SLASSAIGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFAS
VVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKN
VCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALST
ALGSSWMALAPICAGLSFVHISCNYLSLRHVCLNTINAERMELIMQHYVL
TGRIPAPGDISPIERFMTPAIYDTVAPSALVARLPSLRMGRHLDEVASLE
QLPRLARLFEKEKYVLNAKGRRGDGTATVDVLMKEEANVHDVLKACVHSY
YVRKEAGREGGWKAPRVQSAWARLMEKKEVERSDTWLIDLVESTHKTLYR
PSSGAGGAREGGREDGRGKHLTMVDDIVGQLTRAGWLTDSVFFPHTQNRI
SFEGGAIQGVPLSSSDSNKKGA*
back to top
Synonyms
Publications