NO18G01080.1, NO18G01080.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G01080.1
Unique Name	NO18G01080.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2029
Alignment location	chr18:381920..383948 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:381920..383948 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO18G01080.1 vs.
Match: EWM23329.1 (uncharacterized protein Naga_100053g25 [Nannochloropsis gaditana])

HSP 1 Score: 717.6 bits (1851), Expect = 3.000e-203
Identity = 395/551 (71.69%), Postives = 441/551 (80.04%), Query Frame = 0

Query:    8 RRLALQH--SSPCRRPHLLPAPPPLLRLPHRLAASSSTPPTPPSSTDKLVAKQIMTDRAGYRETLYYAAVPSSSMAEKSKDKETEESTTTSSTTNSKAYHRIDPPPEVLSLRLLAEDGLRALLPRGYPRSVQKGYAEYVKLQMTASLASSAIGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFASVVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSFVHISCNYLSLRHVCLNTINAERMELIMQHYVLTGRIPAPGDISPIERFMTPAIYDTVAPSALVARLPSLRMGRHLDEVASLEQLPRLARLFEKEKYVLNAKGRRGDGTATVDVLMKEEANVHDVLKACVHSYYVRKEAGREGGWKAPRVQSAWARLMEKKEVERSDTWLIDLVESTHKTLYRPSSGAGGAREGGREDGRGKHLTMVDDIVGQLTRAGWLTDSVFFPHTQNRISFEGGA 557
            R LA QH  S   R+ HLL APPP  RL  R  ASSS+PP    + +KL+AKQIMT RAG RETLYYAA+ S S    SKDK              + YHR+DPPPE+LS RL+ ED LRALLPRGYPRSVQKGY EYVKLQMTASLASSA+GVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGI+FASVVNDRFDANPKRWKMVATISLDLSC LELLAPLAP  FLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSF+HISCNYLSLRHVCLNT+NAER EL++  +   GRIP PG++S  E FM PAIYDTVAPSAL + LP LRMGR L EVAS  QL RLARLF ++ Y+LNA+GR  DGTATVDVLMKE+A+V DVL+AC+H+YYVR+EA    GWKAP   SAW ++  ++  E  +TWL++LVE TH+ L +P   + G  E        + +T VDDIVGQ+ +AGWL DSVFFPHTQNR++FEG A
Sbjct:   13 RILASQHGVSGLGRKHHLLKAPPP--RLVLRWTASSSSPPKAHVTNEKLMAKQIMTARAGCRETLYYAALQSDS----SKDKV-------------QIYHRVDPPPEILSPRLVLEDALRALLPRGYPRSVQKGYVEYVKLQMTASLASSAVGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIVFASVVNDRFDANPKRWKMVATISLDLSCGLELLAPLAPAYFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSFIHISCNYLSLRHVCLNTLNAERAELVLDRFWSQGRIPHPGEVSGEECFMWPAIYDTVAPSALKSGLPILRMGRPLHEVASPRQLVRLARLFARDGYLLNARGRARDGTATVDVLMKEDASVEDVLRACIHAYYVRREASAR-GWKAPPPPSAWTQMTGRRTEEGLETWLLELVEETHRALQQPVVHSPGPSE-------EETITRVDDIVGQVKQAGWLIDSVFFPHTQNRVAFEGVA 536

The following BLAST results are available for this feature:

BLAST of NO18G01080.1 vs.

BLAST of NO18G01080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23329.1	3.000e-203	71.69	uncharacterized protein Naga_100053g25 [Nannochlor...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G01080	NO18G01080	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01080.1	NO18G01080.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01080.1.cds1	NO18G01080.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:381920..383948-
coding sequence from alignment at chr18:381920..383948-

mRNA sequence

>NO18G01080.1 ID=NO18G01080.1|Name=NO18G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp
ATGCTGGGAGGAACGCGGCTGCGGCGTCTAGCCCTGCAGCACAGCAGTCC
GTGTCGCAGGCCACATCTTTTGCCAGCACCCCCACCTCTCCTTCGCCTCC
CGCATCGTTTGGCTGCCTCCTCGTCCACCCCACCCACTCCCCCTTCCTCC
ACCGACAAGCTTGTGGCCAAGCAAATCATGACAGACCGGGCAGGCTACCG
TGAGACGCTGTACTATGCGGCCGTGCCCTCGTCTTCGATGGCCGAGAAAT
CCAAAGACAAGGAAACGGAGGAGAGCACCACCACTAGCAGCACCACAAAT
AGCAAGGCATATCACCGTATCGACCCTCCCCCCGAAGTCCTTTCCCTCCG
CCTTCTGGCCGAAGACGGCCTCCGCGCCTTGCTTCCAAGAGGCTACCCAC
GCTCGGTCCAAAAAGGGTACGCAGAATATGTCAAACTTCAAATGACAGCT
TCCCTGGCCAGCTCCGCCATTGGTGTGCTCTCCACTCAATCCCTCCTCTA
CGCCATGGGCCTGGGCGCCGGCGCCATCCCCCTCGCCGCGGCCCTTAACT
GGATCATAAAAGACGGGATCGGACAAGTCGGCGGCATCATATTCGCCAGT
GTCGTGAACGACCGATTCGACGCGAATCCCAAACGCTGGAAAATGGTCGC
CACGATTTCCCTTGACCTCTCCTGCGCACTCGAGCTCCTTGCGCCTCTCG
CCCCAGGGTCCTTCCTCGCCATCGCCTCCCTCGCCAACGTCGGCAAAAAC
GTATGTTTCCTCTCCGCCTCCGCCTCGCGCGCGGCCATCCACAACTCCTT
CGCCAAACGGGAGAATCTCGCCGACATCACCGCAAAAGCTGGTTCTCAAT
TCATAGTCACTTCAATCCTCGGCACTGGTCTGGGTATCGCCCTCTCCACC
GCACTAGGCTCTTCCTGGATGGCGCTCGCTCCCATCTGTGCAGGGCTGTC
TTTTGTCCACATTTCTTGTAACTACCTATCCCTACGCCACGTTTGCCTCA
ACACAATCAACGCCGAGAGGATGGAGTTGATCATGCAGCACTACGTCCTC
ACAGGCCGCATCCCCGCCCCGGGCGACATATCTCCAATCGAACGGTTTAT
GACCCCCGCCATCTATGACACAGTGGCCCCTTCCGCATTAGTGGCGCGCT
TGCCTTCCTTGAGGATGGGGAGGCACTTAGACGAGGTGGCAAGCCTTGAG
CAGCTGCCAAGGTTGGCCCGGTTGTTCGAAAAGGAGAAATATGTTTTGAA
TGCGAAGGGAAGGAGGGGGGATGGGACGGCGACCGTTGATGTGTTGATGA
AGGAAGAGGCAAATGTCCACGACGTGTTGAAGGCGTGCGTGCATTCGTAC
TACGTCAGAAAGGAGGCAGGGAGGGAGGGAGGGTGGAAGGCCCCTCGGGT
GCAGTCGGCGTGGGCGAGGTTGATGGAGAAGAAGGAGGTGGAACGGTCAG
ATACGTGGCTCATTGACCTCGTGGAAAGCACGCATAAAACATTGTACCGA
CCATCGTCGGGGGCTGGAGGGGCAAGGGAGGGAGGGAGGGAGGATGGGAG
GGGGAAGCATTTGACTATGGTGGATGATATTGTGGGGCAGTTGACGCGGG
CTGGGTGGTTGACGGACAGTGTGTTTTTCCCACATACCCAAAATAGGATT
AGCTTTGAAGGGGGCGCGATTCAAGGAGTGCCCTTGTCGTCATCTGACAG
CAATAAAAAGGGAGCATGAAGGTGTAAGAATGTCGGATAGTGGGGCAGTG
GACGGGTAGTGGTAGTGTCGTGTTGTCTGCAATCACCTTCGGGTTCGACG
GGGCCTCCATCTCGATGTCGATTTAAGAGAAGGGTGAGGGGGAAGAAAGC
ACAAGCCACTCAAGTGTGTCAATAGGTCGATAAAGGAATGTGTAAAAGTA
GACGGAGGTGGCGAGAGTCGTCGAGCACAAGCGCACGCATGGCGCATCTG
GACACGAGGCAATAAACGCATCTTTAAAAAGATTAGCATCAATAGGCGAC
AGATTCCCAAAATCCATTTCACTTTGTAT

protein sequence of NO18G01080.1

>NO18G01080.1-protein ID=NO18G01080.1-protein|Name=NO18G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MLGGTRLRRLALQHSSPCRRPHLLPAPPPLLRLPHRLAASSSTPPTPPSS
TDKLVAKQIMTDRAGYRETLYYAAVPSSSMAEKSKDKETEESTTTSSTTN
SKAYHRIDPPPEVLSLRLLAEDGLRALLPRGYPRSVQKGYAEYVKLQMTA
SLASSAIGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFAS
VVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKN
VCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALST
ALGSSWMALAPICAGLSFVHISCNYLSLRHVCLNTINAERMELIMQHYVL
TGRIPAPGDISPIERFMTPAIYDTVAPSALVARLPSLRMGRHLDEVASLE
QLPRLARLFEKEKYVLNAKGRRGDGTATVDVLMKEEANVHDVLKACVHSY
YVRKEAGREGGWKAPRVQSAWARLMEKKEVERSDTWLIDLVESTHKTLYR
PSSGAGGAREGGREDGRGKHLTMVDDIVGQLTRAGWLTDSVFFPHTQNRI
SFEGGAIQGVPLSSSDSNKKGA*

mRNA from alignment at chr18:381920..383948-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G01080.1 ID=NO18G01080.1|Name=NO18G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp|location=Sequence derived from alignment at chr18:381920..383948- (Nannochloropsis oceanica)
ATGCTGGGAGGAACGCGGCTGCGGCGTCTAGCCCTGCAGCACAGCAGTCC
GTGTCGCAGGCCACATCTTTTGCCAGCACCCCCACCTCTCCTTCGCCTCC
CGCATCGTTTGGCTGCCTCCTCGTCCACCCCACCCACTCCCCCTTCCTCC
ACCGACAAGCTTGTGGCCAAGCAAATCATGACAGACCGGGCAGGCTACCG
TGAGACGCTGTACTATGCGGCCGTGCCCTCGTCTTCGATGGCCGAGAAAT
CCAAAGACAAGGAAACGGAGGAGAGCACCACCACTAGCAGCACCACAAAT
AGCAAGGCATATCACCGTATCGACCCTCCCCCCGAAGTCCTTTCCCTCCG
CCTTCTGGCCGAAGACGGCCTCCGCGCCTTGCTTCCAAGAGGCTACCCAC
GCTCGGTCCAAAAAGGGTACGCAGAATATGTCAAACTTCAAATGACAGCT
TCCCTGGCCAGCTCCGCCATTGGTGTGCTCTCCACTCAATCCCTCCTCTA
CGCCATGGGCCTGGGCGCCGGCGCCATCCCCCTCGCCGCGGCCCTTAACT
GGATCATAAAAGACGGGATCGGACAAGTCGGCGGCATCATATTCGCCAGT
GTCGTGAACGACCGATTCGACGCGAATCCCAAACGCTGGAAAATGGTCGC
CACGATTTCCCTTGACCTCTCCTGCGCACTCGAGCTCCTTGCGCCTCTCG
CCCCAGGGTCCTTCCTCGCCATCGCCTCCCTCGCCAACGTCGGCAAAAAC
GTATGTTTCCTCTCCGCCTCCGCCTCGCGCGCGGCCATCCACAACTCCTT
CGCCAAACGGGAGAATCTCGCCGACATCACCGCAAAAGCTGGTTCTCAAT
TCATAGTCACTTCAATCCTCGGCACTGGTCTGGGTATCGCCCTCTCCACC
GCACTAGGCTCTTCCTGGATGGCGCTCGCTCCCATCTGTGCAGGGCTGTC
TTTTGTCCACATTTCTTGTAACTACCTATCCCTACGCCACGTTTGCCTCA
ACACAATCAACGCCGAGAGGATGGAGTTGATCATGCAGCACTACGTCCTC
ACAGGCCGCATCCCCGCCCCGGGCGACATATCTCCAATCGAACGGTTTAT
GACCCCCGCCATCTATGACACAGTGGCCCCTTCCGCATTAGTGGCGCGCT
TGCCTTCCTTGAGGATGGGGAGGCACTTAGACGAGGTGGCAAGCCTTGAG
CAGCTGCCAAGGTTGGCCCGGTTGTTCGAAAAGGAGAAATATGTTTTGAA
TGCGAAGGGAAGGAGGGGGGATGGGACGGCGACCGTTGATGTGTTGATGA
AGGAAGAGGCAAATGTCCACGACGTGTTGAAGGCGTGCGTGCATTCGTAC
TACGTCAGAAAGGAGGCAGGGAGGGAGGGAGGGTGGAAGGCCCCTCGGGT
GCAGTCGGCGTGGGCGAGGTTGATGGAGAAGAAGGAGGTGGAACGGTCAG
ATACGTGGCTCATTGACCTCGTGGAAAGCACGCATAAAACATTGTACCGA
CCATCGTCGGGGGCTGGAGGGGCAAGGGAGGGAGGGAGGGAGGATGGGAG
GGGGAAGCATTTGACTATGGTGGATGATATTGTGGGGCAGTTGACGCGGG
CTGGGTGGTTGACGGACAGTGTGTTTTTCCCACATACCCAAAATAGGATT
AGCTTTGAAGGGGGCGCGATTCAAGGAGTGCCCTTGTCGTCATCTGACAG
CAATAAAAAGGGAGCATGAAGGTGTAAGAATGTCGGATAGTGGGGCAGTG
GACGGGTAGTGGTAGTGTCGTGTTGTCTGCAATCACCTTCGGGTTCGACG
GGGCCTCCATCTCGATGTCGATTTAAGAGAAGGGTGAGGGGGAAGAAAGC
ACAAGCCACTCAAGTGTGTCAATAGGTCGATAAAGGAATGTGTAAAAGTA
GACGGAGGTGGCGAGAGTCGTCGAGCACAAGCGCACGCATGGCGCATCTG
GACACGAGGCAATAAACGCATCTTTAAAAAGATTAGCATCAATAGGCGAC
AGATTCCCAAAATCCATTTCACTTTGTAT

Coding sequence (CDS) from alignment at chr18:381920..383948-

>NO18G01080.1 ID=NO18G01080.1|Name=NO18G01080.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr18:381920..383948- (Nannochloropsis oceanica)
ATGCTGGGAGGAACGCGGCTGCGGCGTCTAGCCCTGCAGCACAGCAGTCC
GTGTCGCAGGCCACATCTTTTGCCAGCACCCCCACCTCTCCTTCGCCTCC
CGCATCGTTTGGCTGCCTCCTCGTCCACCCCACCCACTCCCCCTTCCTCC
ACCGACAAGCTTGTGGCCAAGCAAATCATGACAGACCGGGCAGGCTACCG
TGAGACGCTGTACTATGCGGCCGTGCCCTCGTCTTCGATGGCCGAGAAAT
CCAAAGACAAGGAAACGGAGGAGAGCACCACCACTAGCAGCACCACAAAT
AGCAAGGCATATCACCGTATCGACCCTCCCCCCGAAGTCCTTTCCCTCCG
CCTTCTGGCCGAAGACGGCCTCCGCGCCTTGCTTCCAAGAGGCTACCCAC
GCTCGGTCCAAAAAGGGTACGCAGAATATGTCAAACTTCAAATGACAGCT
TCCCTGGCCAGCTCCGCCATTGGTGTGCTCTCCACTCAATCCCTCCTCTA
CGCCATGGGCCTGGGCGCCGGCGCCATCCCCCTCGCCGCGGCCCTTAACT
GGATCATAAAAGACGGGATCGGACAAGTCGGCGGCATCATATTCGCCAGT
GTCGTGAACGACCGATTCGACGCGAATCCCAAACGCTGGAAAATGGTCGC
CACGATTTCCCTTGACCTCTCCTGCGCACTCGAGCTCCTTGCGCCTCTCG
CCCCAGGGTCCTTCCTCGCCATCGCCTCCCTCGCCAACGTCGGCAAAAAC
GTATGTTTCCTCTCCGCCTCCGCCTCGCGCGCGGCCATCCACAACTCCTT
CGCCAAACGGGAGAATCTCGCCGACATCACCGCAAAAGCTGGTTCTCAAT
TCATAGTCACTTCAATCCTCGGCACTGGTCTGGGTATCGCCCTCTCCACC
GCACTAGGCTCTTCCTGGATGGCGCTCGCTCCCATCTGTGCAGGGCTGTC
TTTTGTCCACATTTCTTGTAACTACCTATCCCTACGCCACGTTTGCCTCA
ACACAATCAACGCCGAGAGGATGGAGTTGATCATGCAGCACTACGTCCTC
ACAGGCCGCATCCCCGCCCCGGGCGACATATCTCCAATCGAACGGTTTAT
GACCCCCGCCATCTATGACACAGTGGCCCCTTCCGCATTAGTGGCGCGCT
TGCCTTCCTTGAGGATGGGGAGGCACTTAGACGAGGTGGCAAGCCTTGAG
CAGCTGCCAAGGTTGGCCCGGTTGTTCGAAAAGGAGAAATATGTTTTGAA
TGCGAAGGGAAGGAGGGGGGATGGGACGGCGACCGTTGATGTGTTGATGA
AGGAAGAGGCAAATGTCCACGACGTGTTGAAGGCGTGCGTGCATTCGTAC
TACGTCAGAAAGGAGGCAGGGAGGGAGGGAGGGTGGAAGGCCCCTCGGGT
GCAGTCGGCGTGGGCGAGGTTGATGGAGAAGAAGGAGGTGGAACGGTCAG
ATACGTGGCTCATTGACCTCGTGGAAAGCACGCATAAAACATTGTACCGA
CCATCGTCGGGGGCTGGAGGGGCAAGGGAGGGAGGGAGGGAGGATGGGAG
GGGGAAGCATTTGACTATGGTGGATGATATTGTGGGGCAGTTGACGCGGG
CTGGGTGGTTGACGGACAGTGTGTTTTTCCCACATACCCAAAATAGGATT
AGCTTTGAAGGGGGCGCGATTCAAGGAGTGCCCTTGTCGTCATCTGACAG
CAATAAAAAGGGAGCATGA

Synonyms

Publications