NO18G00980, NO18G00980 (gene) Nannochloropsis oceanica

Overview
NameNO18G00980
Unique NameNO18G00980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2065
Alignment locationchr18:354153..356217 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:354153..356217 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G00980 vs. NCBI_GenBank
Match: EWM23327.1 (hypothetical protein Naga_100053g37 [Nannochloropsis gaditana])

HSP 1 Score: 214.9 bits (546), Expect = 5.800e-52
Identity = 150/347 (43.23%), Postives = 201/347 (57.93%), Query Frame = 0 
Query:  175 KVYIVDDLMSEDGELRGTLILDEISEYSVVDKKASGGSIKYFKVMLHLYNSGFEPICGITVAISPTEKMEIEQLWTLQQTEDDSDVYEVQWADHVSPDNPRSNSRYFGLITKRELPEVKIDSITPCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGMEGWR---EGEVTLAVDQ-AAEWVQLDILEALALPNTTRGSSSSNVLINARVVNVGETPLCGVTLWIHDFRSAAEYWSLVPSSPEGEWEDGREEGRMRSMTFLTLPTRNSSLVVGGSHYFGLVVEERGWNEGGRTGGYPNMVVVRASQACG 518
            K  ++DD+ S+DGELRG+LILDEIS Y V D +A GG+I Y+KV+LHL N+G  P+CG+TVA+ P   MEIEQLWT++++E + DVY+V W D+V P +PR   RYFGL+TK   P V IDS++PC             XXXXXXXXXXXXXXXXXXXX                                   RG++  +   +  + + VD  AA W  +++LE L L     G  +  +L+NARV N+G+ PLC ++L++ D   A  YWSL+P   EG  +  R            LP++ SSL+ G SHYFGLVVEE    EG +  G PN+VV+ A +  G
Sbjct:  149 KPVVLDDVASKDGELRGSLILDEISSYMVEDFEAPGGTITYYKVVLHLSNAGQRPLCGMTVAVPPKRGMEIEQLWTMEESEIE-DVYDVLWTDYVPPKDPRHGVRYFGLVTKGAAPNVTIDSLSPC-------LSDYEDXXXXXXXXXXXXXXXXXXXXAEDAKHGPGRVAKRVVAGHPKPLARGRGVPDSLPRRGLQARQLPADAGLPMPVDPLAANWTLVEVLETLVLKKAGPGPEAFELLVNARVSNMGQKPLCDLSLFVRDLHLAGAYWSLLP--VEGTPDVAR------------LPSKESSLMPGQSHYFGLVVEETAKKEGEQE-GQPNLVVLTAKECVG 472
The following BLAST results are available for this feature:
BLAST of NO18G00980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23327.15.800e-5243.23hypothetical protein Naga_100053g37 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003952NSK003952Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00980.1NO18G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100053g37gene7144Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00980.1NO18G00980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00980 ID=NO18G00980|Name=NO18G00980|organism=Nannochloropsis oceanica|type=gene|length=2065bp
TTATCCTTGAGCTTATCTCTCTGTGTGTGGAATGGTGTGGTGTGAAGTGG
TCAAAGGCCTGCTTGCTCGTTAATATTTGCTGCCAATACCGTTGGCTCGA
ATCGGAACGCAGTCGTGTTCTTGAGGCCCATGCCTTCTTTCAAAACTAAT
AAATATTGCCCTCACTACTCACGCCCCACACACCCACACCCCGCCCACAC
ACGCAACAGCCTCATCATTATGCGGCTGTCCTCCTCGAAGATGGCCTCCT
TGTGCCTGATCCTGGGTTTATTTTTCTGCTTTCTGAGCAGCAGCACGACA
AATCCCCACGGCAGCACGGGCACTGGCACATTTACCCTCGCAGCAGCAGC
AACAGCAACAGCAACTGAAGAGGTCCAGGAAAAGTCGACATCGTACTCCA
ACACACGAGTCGGCTCGCTGAGGCATCTGAAAAGGGTGGAAGTTGATGCC
GAGGGCGAGATGGAGACAGAGGAGGAAGAGGAAGCAGGAGATGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGATGATGATGAGTATGAGG
AGGAGGATGAAGAAGAGGATGAGGAGGACGAAGACGAGGAAGAGGACGAG
GAGGACGAAGAGGAAGAGGATGAGGAAGACGACGAAGAAACGCCAACGGC
AAAGGTGTACATCGTAGACGACCTCATGAGCGAGGACGGCGAGTTGAGGG
GCACGCTGATTCTCGATGAAATTTCAGAGTACTCAGTAGTGGACAAGAAG
GCTTCTGGAGGGAGCATCAAGTATTTTAAGgttagtgggcgtgtgtgtat
gatccgtgtcttatgaaagatggcctatctccatctcttcttcgcctccc
tccctacctcccctcctcccgcagGTCATGCTCCACCTCTACAACTCAGG
ATTCGAACCGATATGTGGTATCACCGTCGCGATATCTCCAACTGAAAAGA
TGGAAATCGAACAGTTGTGGACGTTGCAGCAAACGGAGGACGACTCGGAC
GTGTATGAGGTCCAATGGGCCGACCACGTTTCTCCAGACAACCCCAGgca
tgtcccctccccccctccctccatccctcactggatgtggagataaaatg
ggtgtgcggaatcctacggactgacaacgtcccatccatccctccctccc
tccctccctcccgcccttccttccttcctacttcagtagtctccacaatc
tgcatcaatccctaattccctccccctctcaactgccccatttcacttcc
acataccacagGAGCAATAGCAGGTATTTCGGCTTGATCACCAAGAGAGA
ACTACCTGAAGTGAAGATTGACTCCATAACGCCGTGCGAGGAGGAGGAGG
AGGAGGAGGAAGAAGGAGGAGAAGAAGAGTGGGATGAGGATGAGGATGGG
GATGAGGAGAAGAAAGAGGAGGCGGATGAGGAAAAAGAGGAGGAGGGAGA
AGAGGGGGTTGGCAAAGACGACGGCGGTGCCCAAACCCTCTCACAGAAGA
AAGCAAAGGCCCATGCCCGTCTCCTCGAGGAGGAAGAGGAGCGAGGGATG
GAGGGATGGAGGGAGGGAGAGGTGACCTTGGCAGTCGACCAGGCAGCAGA
GTGGGTGCAATTAGATATCCTAGAAGCTCTGGCCCTCCCTAATACCACCC
GCGGTAGCAGCAGCAGCAACGTGCTTATTAACGCCCGTGTGGTTAATGTG
GGAGAAACCCCTCTCTGCGGCGTCACCCTTTGGATCCACGACTTCCGCTC
GGCGGCTGAATACTGGAGCCTCGTCCCGTCCTCCCCGGAGGGCGAATGGG
AAGACGGGAGGGAAGAAGGGAGGATGAGGTCGATGACTTTTCTGACGCTC
CCGACGAGGAACAGCAGTTTGGTGGTGGGCGGAAGTCATTATTTTGGGTT
GGTGGTGGAGGAGAGGGGTTGGAACGAGGGGGGAAGGACAGGCGGGTATC
CCAATATGGTGGTGGTGAGGGCCAGCCAGGCGTGTGGAGCGAAACTTTGA
GGGAGGGAAGGAGGGAGGGAGAGGTGGAGGGTCTTTATTTATTGGTGAAG
GGGTCAAAGGAGGGG
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protein sequence of NO18G00980.1

>NO18G00980.1-protein ID=NO18G00980.1-protein|Name=NO18G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MPSFKTNKYCPHYSRPTHPHPAHTRNSLIIMRLSSSKMASLCLILGLFFC
FLSSSTTNPHGSTGTGTFTLAAAATATATEEVQEKSTSYSNTRVGSLRHL
KRVEVDAEGEMETEEEEEAGDEEEEEEEEEEEEGDDDEYEEEDEEEDEED
EDEEEDEEDEEEEDEEDDEETPTAKVYIVDDLMSEDGELRGTLILDEISE
YSVVDKKASGGSIKYFKVMLHLYNSGFEPICGITVAISPTEKMEIEQLWT
LQQTEDDSDVYEVQWADHVSPDNPRSNSRYFGLITKRELPEVKIDSITPC
EEEEEEEEEGGEEEWDEDEDGDEEKKEEADEEKEEEGEEGVGKDDGGAQT
LSQKKAKAHARLLEEEEERGMEGWREGEVTLAVDQAAEWVQLDILEALAL
PNTTRGSSSSNVLINARVVNVGETPLCGVTLWIHDFRSAAEYWSLVPSSP
EGEWEDGREEGRMRSMTFLTLPTRNSSLVVGGSHYFGLVVEERGWNEGGR
TGGYPNMVVVRASQACGAKL*
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Synonyms
Publications