NO18G00980.1, NO18G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00980.1
Unique NameNO18G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1757
Alignment locationchr18:354153..356217 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:354153..356217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00980.1 vs.
Match: EWM23327.1 (hypothetical protein Naga_100053g37 [Nannochloropsis gaditana])

HSP 1 Score: 203.0 bits (515), Expect = 2.300e-48
Identity = 191/509 (37.52%), Postives = 287/509 (56.39%), Query Frame = 0 
Query:   31 MRLSSSKMASLCLILGLFFCFLSSSTTNPHGSTGTGTFTLAAAATATATEEVQEKSTSY-SNTRVGSLRHLKRVEVDAEGEMETEEEEEAGDEEEEEEEEEEEEGDDDEYEEEDEEEDEEDEDEEEDEEDEEEEDEEDDEET-----------------PTAKVYIVDDLMSEDGELRGTLILDEISEYSVVDKKASGGSIKYFKVMLHLYNSGFEPICGITVAISPTEKMEIEQLWTLQQTEDDSDVYEVQWADHVSPDNPRSNSRYFGLITKRELPEVKIDSITPCEEEEEEEEEGGEEEWDEDEDGDEEKKEEADEEKEEEGEEGVGKDDGGAQTLSQKKAKAHARLLEEEEERGMEGWR---EGEVTLAVDQ-AAEWVQLDILEALALPNTTRGSSSSNVLINARVVNVGETPLCGVTLWIHDFRSAAEYWSLVPSSPEGEWEDGREEGRMRSMTFLTLPTRNSSLVVGGSHYFGLVVEERGWNEGGRTGGYPNMVVVRASQACG 518
            MRL  S +  LCL+LG   C+  S  T+               + A A EE +EK+++  SNTR    + ++ ++VD  G +E+E+++   +   E+E+ +EEE DDD+ E ++EEE+ E  D+ +DE D++E D  DD+E                     K  ++DD+ S+DGELRG+LILDEIS Y V D +A GG+I Y+KV+LHL N+G  P+CG+TVA+ P   MEIEQLWT++++E + DVY+V W D+V P +PR   RYFGL+TK   P V IDS++PC  + E+++E       ED D D+++ E  +E   E+ + G G+          K       + +    RG++  +   +  + + VD  AA W  +++LE L L     G  +  +L+NARV N+G+ PLC ++L++ D   A  YWSL+P   EG  +  R            LP++ SSL+ G SHYFGLVVEE    EG +  G PN+VV+ A +  G
Sbjct:    1 MRLQQSTVV-LCLLLGYILCYFGSPNTSG-----------VMVSAAKALEEGEEKASARRSNTRGAEAKRMRGMKVDVMGGLESEDDDN--EVWAEDEDVDEEEYDDDDEEADEEEEEGEIADDTDDELDDDEYDSIDDDEMLDDAGEEHVKNVQRKGKKKVKPVVLDDVASKDGELRGSLILDEISSYMVEDFEAPGGTITYYKVVLHLSNAGQRPLCGMTVAVPPKRGMEIEQLWTMEESEIE-DVYDVLWTDYVPPKDPRHGVRYFGLVTKGAAPNVTIDSLSPCLSDYEDDDE-------EDADLDDDEMESEEEGGAEDAKHGPGRVAKRVVAGHPKPLARGRGVPDSLPRRGLQARQLPADAGLPMPVDPLAANWTLVEVLETLVLKKAGPGPEAFELLVNARVSNMGQKPLCDLSLFVRDLHLAGAYWSLLP--VEGTPDVAR------------LPSKESSLMPGQSHYFGLVVEETAKKEGEQE-GQPNLVVLTAKECVG 472
The following BLAST results are available for this feature:
BLAST of NO18G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23327.12.300e-4837.52hypothetical protein Naga_100053g37 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00980NO18G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00980.1NO18G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00980.1.cds1NO18G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00980.1.cds2NO18G00980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00980.1.cds3NO18G00980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00980.1 ID=NO18G00980.1|Name=NO18G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1757bp
TTATCCTTGAGCTTATCTCTCTGTGTGTGGAATGGTGTGGTGTGAAGTGG
TCAAAGGCCTGCTTGCTCGTTAATATTTGCTGCCAATACCGTTGGCTCGA
ATCGGAACGCAGTCGTGTTCTTGAGGCCCATGCCTTCTTTCAAAACTAAT
AAATATTGCCCTCACTACTCACGCCCCACACACCCACACCCCGCCCACAC
ACGCAACAGCCTCATCATTATGCGGCTGTCCTCCTCGAAGATGGCCTCCT
TGTGCCTGATCCTGGGTTTATTTTTCTGCTTTCTGAGCAGCAGCACGACA
AATCCCCACGGCAGCACGGGCACTGGCACATTTACCCTCGCAGCAGCAGC
AACAGCAACAGCAACTGAAGAGGTCCAGGAAAAGTCGACATCGTACTCCA
ACACACGAGTCGGCTCGCTGAGGCATCTGAAAAGGGTGGAAGTTGATGCC
GAGGGCGAGATGGAGACAGAGGAGGAAGAGGAAGCAGGAGATGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGATGATGATGAGTATGAGG
AGGAGGATGAAGAAGAGGATGAGGAGGACGAAGACGAGGAAGAGGACGAG
GAGGACGAAGAGGAAGAGGATGAGGAAGACGACGAAGAAACGCCAACGGC
AAAGGTGTACATCGTAGACGACCTCATGAGCGAGGACGGCGAGTTGAGGG
GCACGCTGATTCTCGATGAAATTTCAGAGTACTCAGTAGTGGACAAGAAG
GCTTCTGGAGGGAGCATCAAGTATTTTAAGGTCATGCTCCACCTCTACAA
CTCAGGATTCGAACCGATATGTGGTATCACCGTCGCGATATCTCCAACTG
AAAAGATGGAAATCGAACAGTTGTGGACGTTGCAGCAAACGGAGGACGAC
TCGGACGTGTATGAGGTCCAATGGGCCGACCACGTTTCTCCAGACAACCC
CAGGAGCAATAGCAGGTATTTCGGCTTGATCACCAAGAGAGAACTACCTG
AAGTGAAGATTGACTCCATAACGCCGTGCGAGGAGGAGGAGGAGGAGGAG
GAAGAAGGAGGAGAAGAAGAGTGGGATGAGGATGAGGATGGGGATGAGGA
GAAGAAAGAGGAGGCGGATGAGGAAAAAGAGGAGGAGGGAGAAGAGGGGG
TTGGCAAAGACGACGGCGGTGCCCAAACCCTCTCACAGAAGAAAGCAAAG
GCCCATGCCCGTCTCCTCGAGGAGGAAGAGGAGCGAGGGATGGAGGGATG
GAGGGAGGGAGAGGTGACCTTGGCAGTCGACCAGGCAGCAGAGTGGGTGC
AATTAGATATCCTAGAAGCTCTGGCCCTCCCTAATACCACCCGCGGTAGC
AGCAGCAGCAACGTGCTTATTAACGCCCGTGTGGTTAATGTGGGAGAAAC
CCCTCTCTGCGGCGTCACCCTTTGGATCCACGACTTCCGCTCGGCGGCTG
AATACTGGAGCCTCGTCCCGTCCTCCCCGGAGGGCGAATGGGAAGACGGG
AGGGAAGAAGGGAGGATGAGGTCGATGACTTTTCTGACGCTCCCGACGAG
GAACAGCAGTTTGGTGGTGGGCGGAAGTCATTATTTTGGGTTGGTGGTGG
AGGAGAGGGGTTGGAACGAGGGGGGAAGGACAGGCGGGTATCCCAATATG
GTGGTGGTGAGGGCCAGCCAGGCGTGTGGAGCGAAACTTTGAGGGAGGGA
AGGAGGGAGGGAGAGGTGGAGGGTCTTTATTTATTGGTGAAGGGGTCAAA
GGAGGGG
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protein sequence of NO18G00980.1

>NO18G00980.1-protein ID=NO18G00980.1-protein|Name=NO18G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MPSFKTNKYCPHYSRPTHPHPAHTRNSLIIMRLSSSKMASLCLILGLFFC
FLSSSTTNPHGSTGTGTFTLAAAATATATEEVQEKSTSYSNTRVGSLRHL
KRVEVDAEGEMETEEEEEAGDEEEEEEEEEEEEGDDDEYEEEDEEEDEED
EDEEEDEEDEEEEDEEDDEETPTAKVYIVDDLMSEDGELRGTLILDEISE
YSVVDKKASGGSIKYFKVMLHLYNSGFEPICGITVAISPTEKMEIEQLWT
LQQTEDDSDVYEVQWADHVSPDNPRSNSRYFGLITKRELPEVKIDSITPC
EEEEEEEEEGGEEEWDEDEDGDEEKKEEADEEKEEEGEEGVGKDDGGAQT
LSQKKAKAHARLLEEEEERGMEGWREGEVTLAVDQAAEWVQLDILEALAL
PNTTRGSSSSNVLINARVVNVGETPLCGVTLWIHDFRSAAEYWSLVPSSP
EGEWEDGREEGRMRSMTFLTLPTRNSSLVVGGSHYFGLVVEERGWNEGGR
TGGYPNMVVVRASQACGAKL*
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mRNA from alignment at chr18:354153..356217+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00980.1 ID=NO18G00980.1|Name=NO18G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2065bp|location=Sequence derived from alignment at chr18:354153..356217+ (Nannochloropsis oceanica)
TTATCCTTGAGCTTATCTCTCTGTGTGTGGAATGGTGTGGTGTGAAGTGG
TCAAAGGCCTGCTTGCTCGTTAATATTTGCTGCCAATACCGTTGGCTCGA
ATCGGAACGCAGTCGTGTTCTTGAGGCCCATGCCTTCTTTCAAAACTAAT
AAATATTGCCCTCACTACTCACGCCCCACACACCCACACCCCGCCCACAC
ACGCAACAGCCTCATCATTATGCGGCTGTCCTCCTCGAAGATGGCCTCCT
TGTGCCTGATCCTGGGTTTATTTTTCTGCTTTCTGAGCAGCAGCACGACA
AATCCCCACGGCAGCACGGGCACTGGCACATTTACCCTCGCAGCAGCAGC
AACAGCAACAGCAACTGAAGAGGTCCAGGAAAAGTCGACATCGTACTCCA
ACACACGAGTCGGCTCGCTGAGGCATCTGAAAAGGGTGGAAGTTGATGCC
GAGGGCGAGATGGAGACAGAGGAGGAAGAGGAAGCAGGAGATGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGATGATGATGAGTATGAGG
AGGAGGATGAAGAAGAGGATGAGGAGGACGAAGACGAGGAAGAGGACGAG
GAGGACGAAGAGGAAGAGGATGAGGAAGACGACGAAGAAACGCCAACGGC
AAAGGTGTACATCGTAGACGACCTCATGAGCGAGGACGGCGAGTTGAGGG
GCACGCTGATTCTCGATGAAATTTCAGAGTACTCAGTAGTGGACAAGAAG
GCTTCTGGAGGGAGCATCAAGTATTTTAAGGTTAGTGGGCGTGTGTGTAT
GATCCGTGTCTTATGAAAGATGGCCTATCTCCATCTCTTCTTCGCCTCCC
TCCCTACCTCCCCTCCTCCCGCAGGTCATGCTCCACCTCTACAACTCAGG
ATTCGAACCGATATGTGGTATCACCGTCGCGATATCTCCAACTGAAAAGA
TGGAAATCGAACAGTTGTGGACGTTGCAGCAAACGGAGGACGACTCGGAC
GTGTATGAGGTCCAATGGGCCGACCACGTTTCTCCAGACAACCCCAGGCA
TGTCCCCTCCCCCCCTCCCTCCATCCCTCACTGGATGTGGAGATAAAATG
GGTGTGCGGAATCCTACGGACTGACAACGTCCCATCCATCCCTCCCTCCC
TCCCTCCCTCCCGCCCTTCCTTCCTTCCTACTTCAGTAGTCTCCACAATC
TGCATCAATCCCTAATTCCCTCCCCCTCTCAACTGCCCCATTTCACTTCC
ACATACCACAGGAGCAATAGCAGGTATTTCGGCTTGATCACCAAGAGAGA
ACTACCTGAAGTGAAGATTGACTCCATAACGCCGTGCGAGGAGGAGGAGG
AGGAGGAGGAAGAAGGAGGAGAAGAAGAGTGGGATGAGGATGAGGATGGG
GATGAGGAGAAGAAAGAGGAGGCGGATGAGGAAAAAGAGGAGGAGGGAGA
AGAGGGGGTTGGCAAAGACGACGGCGGTGCCCAAACCCTCTCACAGAAGA
AAGCAAAGGCCCATGCCCGTCTCCTCGAGGAGGAAGAGGAGCGAGGGATG
GAGGGATGGAGGGAGGGAGAGGTGACCTTGGCAGTCGACCAGGCAGCAGA
GTGGGTGCAATTAGATATCCTAGAAGCTCTGGCCCTCCCTAATACCACCC
GCGGTAGCAGCAGCAGCAACGTGCTTATTAACGCCCGTGTGGTTAATGTG
GGAGAAACCCCTCTCTGCGGCGTCACCCTTTGGATCCACGACTTCCGCTC
GGCGGCTGAATACTGGAGCCTCGTCCCGTCCTCCCCGGAGGGCGAATGGG
AAGACGGGAGGGAAGAAGGGAGGATGAGGTCGATGACTTTTCTGACGCTC
CCGACGAGGAACAGCAGTTTGGTGGTGGGCGGAAGTCATTATTTTGGGTT
GGTGGTGGAGGAGAGGGGTTGGAACGAGGGGGGAAGGACAGGCGGGTATC
CCAATATGGTGGTGGTGAGGGCCAGCCAGGCGTGTGGAGCGAAACTTTGA
GGGAGGGAAGGAGGGAGGGAGAGGTGGAGGGTCTTTATTTATTGGTGAAG
GGGTCAAAGGAGGGG
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Coding sequence (CDS) from alignment at chr18:354153..356217+

>NO18G00980.1 ID=NO18G00980.1|Name=NO18G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr18:354153..356217+ (Nannochloropsis oceanica)
ATGCCTTCTTTCAAAACTAATAAATATTGCCCTCACTACTCACGCCCCAC
ACACCCACACCCCGCCCACACACGCAACAGCCTCATCATTATGCGGCTGT
CCTCCTCGAAGATGGCCTCCTTGTGCCTGATCCTGGGTTTATTTTTCTGC
TTTCTGAGCAGCAGCACGACAAATCCCCACGGCAGCACGGGCACTGGCAC
ATTTACCCTCGCAGCAGCAGCAACAGCAACAGCAACTGAAGAGGTCCAGG
AAAAGTCGACATCGTACTCCAACACACGAGTCGGCTCGCTGAGGCATCTG
AAAAGGGTGGAAGTTGATGCCGAGGGCGAGATGGAGACAGAGGAGGAAGA
GGAAGCAGGAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
GTGATGATGATGAGTATGAGGAGGAGGATGAAGAAGAGGATGAGGAGGAC
GAAGACGAGGAAGAGGACGAGGAGGACGAAGAGGAAGAGGATGAGGAAGA
CGACGAAGAAACGCCAACGGCAAAGGTGTACATCGTAGACGACCTCATGA
GCGAGGACGGCGAGTTGAGGGGCACGCTGATTCTCGATGAAATTTCAGAG
TACTCAGTAGTGGACAAGAAGGCTTCTGGAGGGAGCATCAAGTATTTTAA
GGTCATGCTCCACCTCTACAACTCAGGATTCGAACCGATATGTGGTATCA
CCGTCGCGATATCTCCAACTGAAAAGATGGAAATCGAACAGTTGTGGACG
TTGCAGCAAACGGAGGACGACTCGGACGTGTATGAGGTCCAATGGGCCGA
CCACGTTTCTCCAGACAACCCCAGGAGCAATAGCAGGTATTTCGGCTTGA
TCACCAAGAGAGAACTACCTGAAGTGAAGATTGACTCCATAACGCCGTGC
GAGGAGGAGGAGGAGGAGGAGGAAGAAGGAGGAGAAGAAGAGTGGGATGA
GGATGAGGATGGGGATGAGGAGAAGAAAGAGGAGGCGGATGAGGAAAAAG
AGGAGGAGGGAGAAGAGGGGGTTGGCAAAGACGACGGCGGTGCCCAAACC
CTCTCACAGAAGAAAGCAAAGGCCCATGCCCGTCTCCTCGAGGAGGAAGA
GGAGCGAGGGATGGAGGGATGGAGGGAGGGAGAGGTGACCTTGGCAGTCG
ACCAGGCAGCAGAGTGGGTGCAATTAGATATCCTAGAAGCTCTGGCCCTC
CCTAATACCACCCGCGGTAGCAGCAGCAGCAACGTGCTTATTAACGCCCG
TGTGGTTAATGTGGGAGAAACCCCTCTCTGCGGCGTCACCCTTTGGATCC
ACGACTTCCGCTCGGCGGCTGAATACTGGAGCCTCGTCCCGTCCTCCCCG
GAGGGCGAATGGGAAGACGGGAGGGAAGAAGGGAGGATGAGGTCGATGAC
TTTTCTGACGCTCCCGACGAGGAACAGCAGTTTGGTGGTGGGCGGAAGTC
ATTATTTTGGGTTGGTGGTGGAGGAGAGGGGTTGGAACGAGGGGGGAAGG
ACAGGCGGGTATCCCAATATGGTGGTGGTGAGGGCCAGCCAGGCGTGTGG
AGCGAAACTTTGA
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Synonyms
Publications