NO18G00910, NO18G00910 (gene) Nannochloropsis oceanica

Overview
NameNO18G00910
Unique NameNO18G00910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length622
Alignment locationchr18:336432..337053 +

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Properties
Property NameValue
DescriptionCytochrome c oxidase biogenesis protein Cmc1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:336432..337053 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013892Cyt_c_biogenesis_Cmc1-like
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Homology
BLAST of NO18G00910 vs. NCBI_GenBank
Match: EWM23297.1 (Cytochrome c oxidase biogenesis protein Cmc1 [Nannochloropsis gaditana])

HSP 1 Score: 164.1 bits (414), Expect = 2.300e-37
Identity = 75/91 (82.42%), Postives = 87/91 (95.60%), Query Frame = 0
Query:   10 DPNYRDGSREGRLKFSKRAEQHLRDELALHARKECKDALGAFAACAKENGMFVVFKCRGLNNAMNACLSEYTSESKFEEWKKTRGMALSGE 101
            DP+YRDGSREGRL+FSKRAEQHLRDELALHARK+C++ + AFAACAKENGMFV+FKCR LNNAMNACLS+YTSESKFEEWK+TRG++L+ E
Sbjct:   12 DPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSLAEE 102          
BLAST of NO18G00910 vs. NCBI_GenBank
Match: XP_005854913.1 (hypothetical protein NGA_0393000, partial [Nannochloropsis gaditana CCMP526] >EKU21457.1 hypothetical protein NGA_0393000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 115.9 bits (289), Expect = 7.100e-23
Identity = 53/63 (84.13%), Postives = 60/63 (95.24%), Query Frame = 0
Query:   10 DPNYRDGSREGRLKFSKRAEQHLRDELALHARKECKDALGAFAACAKENGMFVVFKCRGLNNA 73
            DP+YRDGSREGRL+FSKRAEQHLRDELALHARK+C++ + AFAACAKENGMFV+FKCR LNNA
Sbjct:   12 DPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNA 74          
BLAST of NO18G00910 vs. NCBI_GenBank
Match: CBN79194.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 87.0 bits (214), Expect = 3.500e-14
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 0
Query:   14 RDGSREGRLKFSKRAEQHLRDELALHARKECKDALGAFAACAKENGMFVVFKCRGLNNAMNACLSEYTSESKFEEWKKTRGMALSGE 101
            +DG R  RL +SKRAE  LR+EL   A K C D++  FAACA+E GM VVF CR  N  MN+CL+++T+E  F+ +K  R + L  E
Sbjct:    5 KDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMLVVFSCREQNALMNSCLNQHTNEESFDRYKFEREIELHRE 91          
BLAST of NO18G00910 vs. NCBI_GenBank
Match: XP_008905165.1 (hypothetical protein PPTG_11755 [Phytophthora parasitica INRA-310] >ETI47379.1 hypothetical protein F443_08389 [Phytophthora parasitica P1569] >ETK87317.1 hypothetical protein L915_08221 [Phytophthora parasitica] >ETL40745.1 hypothetical protein L916_08145 [Phytophthora parasitica] >ETL93901.1 hypothetical protein L917_08043 [Phytophthora parasitica] >ETM47132.1 hypothetical protein L914_08107 [Phytophthora parasitica] >ETM47141.1 hypothetical protein L914_08106 [Phytophthora parasitica] >ETN09332.1 hypothetical protein PPTG_11755 [Phytophthora parasitica INRA-310] >ETO76100.1 hypothetical protein F444_08445 [Phytophthora parasitica P1976] >ETP17175.1 hypothetical protein F441_08371 [Phytophthora parasitica CJ01A1] >ETP45229.1 hypothetical protein F442_08327 [Phytophthora parasitica P10297] >KUF75910.1 hypothetical protein AM587_10008700 [Phytophthora nicotianae] >KUF98155.1 Vacuolar protein sorting-associated protein 27 [Phytophthora nicotianae])

HSP 1 Score: 73.2 bits (178), Expect = 5.300e-10
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 0
Query:   18 REGRLKFSKRAEQHLRDELALHARKECKDALGAFAACAKENGMFVVFKCRGLNNAMNACLSEYTSESKFEEWKKTR 94
            R  RL +S +AE  L+ EL+  A  +C+     FA CAK NG+ V FKCR  N A+NACL +YT++ +FE ++K R
Sbjct:   15 RSSRLSWSNQAEHKLKQELSDIAIAKCRSVSEKFAECAKANGLMVAFKCRDHNKALNACLHQYTNDEQFEIYRKRR 90          
BLAST of NO18G00910 vs. NCBI_GenBank
Match: POM66520.1 (Alpha-N-acetylglucosaminidase (NAGLU) [Phytophthora palmivora var. palmivora])

HSP 1 Score: 71.6 bits (174), Expect = 1.500e-9
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 0
Query:    2 SSSSSTPVDPNYRDGS-REGRLKFSKRAEQHLRDELALHARKECKDALGAFAACAKENGMFVVFKCRGLNNAMNACLSEYTSESKFEEWKKTR 94
            S +   PVD        R  RL +S +AE  L+ EL+  A  +C      FA CAK NG+ VVFKCR  N A+NACL +YT++ +FE +++ R
Sbjct:  759 SHNMEQPVDKETAKAKFRSSRLSWSNQAEHKLKQELSDIAISKCHSVAEKFAECAKANGLMVVFKCRDHNKALNACLHQYTNDEQFEIYRQKR 851          
BLAST of NO18G00910 vs. NCBI_GenBank
Match: POM71809.1 (Alpha-N-acetylglucosaminidase (NAGLU) [Phytophthora palmivora var. palmivora])

HSP 1 Score: 71.6 bits (174), Expect = 1.500e-9
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 0
Query:    2 SSSSSTPVDPNYRDGS-REGRLKFSKRAEQHLRDELALHARKECKDALGAFAACAKENGMFVVFKCRGLNNAMNACLSEYTSESKFEEWKKTR 94
            S +   PVD        R  RL +S +AE  L+ EL+  A  +C      FA CAK NG+ VVFKCR  N A+NACL +YT++ +FE +++ R
Sbjct:  759 SHTMEQPVDKETAKAKFRSSRLSWSNQAEHKLKQELSDIAISKCHSVAEKFAECAKANGLMVVFKCRDHNKALNACLHQYTNDEQFEIYRQKR 851          
BLAST of NO18G00910 vs. NCBI_GenBank
Match: OQR93864.1 (hypothetical protein THRCLA_08325 [Thraustotheca clavata])

HSP 1 Score: 71.2 bits (173), Expect = 2.000e-9
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 0
Query:    2 SSSSSTPVDPNYRDGSREGRLKFSKRAEQHLRDELALHARKECKDALGAFAACAKENGMFVVFKCRGLNNAMNACLSEYTSESKFEEWKKTRGMAL 98
            +S  +TP   + +   R  RL++S +AE  L  EL   A K+C D   AF  C+ E+G+ VVFKCR  N  +NACL EYT+   +E++K ++  AL
Sbjct:  225 NSMEATPSREDQKAEWRGSRLQWSNQAEHKLHQELNTIALKKCYDKTKAFVDCSHEHGLLVVFKCRQQNADLNACLHEYTNPEAYEKFKASKTEAL 320          
BLAST of NO18G00910 vs. NCBI_GenBank
Match: EJK49979.1 (hypothetical protein THAOC_31089 [Thalassiosira oceanica])

HSP 1 Score: 68.6 bits (166), Expect = 1.300e-8
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 0
Query:   14 RDGSREGRLKFSKRAEQHLRDELALHARKECKDALGAFAACAKENGMFVVFKCRGLNNAMNACLSEYTSESKFEEWKK 92
            +D  R+GRL F   AE  +R E    A ++C + L AF  CA++NG+ VVF+CR LN  +N C+ E+ S   FE + K
Sbjct:   15 KDEGRDGRLSFRNFAEHKMRREFKDAAVEKCSEHLRAFGQCAQDNGLMVVFRCRELNKKINECMHEHNSHEAFERYIK 92          
BLAST of NO18G00910 vs. NCBI_GenBank
Match: OQR86874.1 (hypothetical protein ACHHYP_09756 [Achlya hypogyna])

HSP 1 Score: 68.6 bits (166), Expect = 1.300e-8
Identity = 40/96 (41.67%), Postives = 54/96 (56.25%), Query Frame = 0
Query:    1 MSSSSSTPVDPNYRDGSRE---GRLKFSKRAEQHLRDELALHARKECKDALGAFAACAKENGMFVVFKCRGLNNAMNACLSEYTSESKFEEWKKTR 94
            MSS ++    PN  D   E    RL++SK+AE  L  EL   A ++C     AF  C+ E+G+ VVFKCR  N  +NACL EYT+   F  +K +R
Sbjct:    1 MSSPNAAEATPNREDQKNEWRGSRLQWSKQAEHKLHQELNAIALEKCYAKTKAFVDCSHEHGLLVVFKCRQHNADLNACLHEYTNPEAFAAFKASR 96          
BLAST of NO18G00910 vs. NCBI_GenBank
Match: GBG28091.1 (COX assembly mitochondrial protein-like [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 68.6 bits (166), Expect = 1.300e-8
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 0
Query:   30 QHLRDELALHARKECKDALGAFAACAKENGMFVVFKCRGLNNAMNACLSEYTSESKFEEWKKTR 94
            Q LR      AR+ CKD   AF  CA+E+ + V+FKCR LN AMN C+S+YTS  ++EE+++ +
Sbjct:    3 QRLRTIFLKEARERCKDETEAFVECAREHNLMVIFKCRHLNKAMNECVSQYTSTEQWEEYRQMK 66          
The following BLAST results are available for this feature:
BLAST of NO18G00910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 13
Match NameE-valueIdentityDescription
EWM23297.12.300e-3782.42Cytochrome c oxidase biogenesis protein Cmc1 [Nann... [more]
XP_005854913.17.100e-2384.13hypothetical protein NGA_0393000, partial [Nannoch... [more]
CBN79194.13.500e-1449.43conserved unknown protein [Ectocarpus siliculosus][more]
XP_008905165.15.300e-1046.05hypothetical protein PPTG_11755 [Phytophthora para... [more]
POM66520.11.500e-941.94Alpha-N-acetylglucosaminidase (NAGLU) [Phytophthor... [more]
POM71809.11.500e-941.94Alpha-N-acetylglucosaminidase (NAGLU) [Phytophthor... [more]
OQR93864.12.000e-940.63hypothetical protein THRCLA_08325 [Thraustotheca c... [more]
EJK49979.11.300e-842.31hypothetical protein THAOC_31089 [Thalassiosira oc... [more]
OQR86874.11.300e-841.67hypothetical protein ACHHYP_09756 [Achlya hypogyna... [more]
GBG28091.11.300e-846.88COX assembly mitochondrial protein-like [Aurantioc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003942NSK003942Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00910.1NO18G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609137gene_9556Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100158g16gene7154Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00910.1NO18G00910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00910 ID=NO18G00910|Name=NO18G00910|organism=Nannochloropsis oceanica|type=gene|length=622bp
ATGAGCAGCAGCAGTAGCACCCCCGTCGACCCCAACTACAGGGACGGCTC
GAGGGAAGGTCGTCTGAAGTTCAGCAAGAGGGCAGAGCAGgtttggggac
agagagtgaggtggctgcctcgcacgtggtcgtcgtgattctcacatatc
tttatctgcactcctcttccccttagCACCTCCGAGACGAACTGGCCCTG
CACGCGCGGAAAGAATGCAAGGATGCCTTGGGCGCGTTCGCGGCCTGCGC
CAAAGAGAATGGGATGTTTGTCGTATTCAAGTGCCGTGGACTCAACAATG
CCAgtaagtgggaatgaaaggatgggagtgtggacatgctccatgagctt
gcttgacctgccccctatccctccgtgggtctctgattatgcaatggatc
acaaaaagagtgtcgtttcccacgatctatccgcattttcttactctcac
agtctgtttgctttccgcatcatgtctcggcctgccctattcttgctcac
gcccttggtccctccctccctttctccaacacacagTGAACGCCTGCTTA
AGCGAGTACACGTCCGAGAGCAAATTCGAAGAATGGAAGAAAACCCGCGG
GATGGCCTTATCGGGCGAATGA
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protein sequence of NO18G00910.1

>NO18G00910.1-protein ID=NO18G00910.1-protein|Name=NO18G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MSSSSSTPVDPNYRDGSREGRLKFSKRAEQHLRDELALHARKECKDALGA
FAACAKENGMFVVFKCRGLNNAMNACLSEYTSESKFEEWKKTRGMALSGE
*
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Synonyms
Publications