NO18G00910.1, NO18G00910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00910.1
Unique NameNO18G00910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length303
Alignment locationchr18:336432..337053 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:336432..337053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00910.1 vs.
Match: EWM23297.1 (Cytochrome c oxidase biogenesis protein Cmc1 [Nannochloropsis gaditana])

HSP 1 Score: 164.1 bits (414), Expect = 2.300e-37
Identity = 75/91 (82.42%), Postives = 87/91 (95.60%), Query Frame = 0 
Query:   10 DPNYRDGSREGRLKFSKRAEQHLRDELALHARKECKDALGAFAACAKENGMFVVFKCRGLNNAMNACLSEYTSESKFEEWKKTRGMALSGE 101
            DP+YRDGSREGRL+FSKRAEQHLRDELALHARK+C++ + AFAACAKENGMFV+FKCR LNNAMNACLS+YTSESKFEEWK+TRG++L+ E
Sbjct:   12 DPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSLAEE 102
The following BLAST results are available for this feature:
BLAST of NO18G00910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23297.12.300e-3782.42Cytochrome c oxidase biogenesis protein Cmc1 [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00910NO18G00910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00910.1NO18G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00910.1.cds1NO18G00910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00910.1.cds2NO18G00910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00910.1.cds3NO18G00910.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00910.1 ID=NO18G00910.1|Name=NO18G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=303bp
ATGAGCAGCAGCAGTAGCACCCCCGTCGACCCCAACTACAGGGACGGCTC
GAGGGAAGGTCGTCTGAAGTTCAGCAAGAGGGCAGAGCAGCACCTCCGAG
ACGAACTGGCCCTGCACGCGCGGAAAGAATGCAAGGATGCCTTGGGCGCG
TTCGCGGCCTGCGCCAAAGAGAATGGGATGTTTGTCGTATTCAAGTGCCG
TGGACTCAACAATGCCATGAACGCCTGCTTAAGCGAGTACACGTCCGAGA
GCAAATTCGAAGAATGGAAGAAAACCCGCGGGATGGCCTTATCGGGCGAA
TGA
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protein sequence of NO18G00910.1

>NO18G00910.1-protein ID=NO18G00910.1-protein|Name=NO18G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MSSSSSTPVDPNYRDGSREGRLKFSKRAEQHLRDELALHARKECKDALGA
FAACAKENGMFVVFKCRGLNNAMNACLSEYTSESKFEEWKKTRGMALSGE
*
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mRNA from alignment at chr18:336432..337053+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00910.1 ID=NO18G00910.1|Name=NO18G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=622bp|location=Sequence derived from alignment at chr18:336432..337053+ (Nannochloropsis oceanica)
ATGAGCAGCAGCAGTAGCACCCCCGTCGACCCCAACTACAGGGACGGCTC
GAGGGAAGGTCGTCTGAAGTTCAGCAAGAGGGCAGAGCAGGTTTGGGGAC
AGAGAGTGAGGTGGCTGCCTCGCACGTGGTCGTCGTGATTCTCACATATC
TTTATCTGCACTCCTCTTCCCCTTAGCACCTCCGAGACGAACTGGCCCTG
CACGCGCGGAAAGAATGCAAGGATGCCTTGGGCGCGTTCGCGGCCTGCGC
CAAAGAGAATGGGATGTTTGTCGTATTCAAGTGCCGTGGACTCAACAATG
CCAGTAAGTGGGAATGAAAGGATGGGAGTGTGGACATGCTCCATGAGCTT
GCTTGACCTGCCCCCTATCCCTCCGTGGGTCTCTGATTATGCAATGGATC
ACAAAAAGAGTGTCGTTTCCCACGATCTATCCGCATTTTCTTACTCTCAC
AGTCTGTTTGCTTTCCGCATCATGTCTCGGCCTGCCCTATTCTTGCTCAC
GCCCTTGGTCCCTCCCTCCCTTTCTCCAACACACAGTGAACGCCTGCTTA
AGCGAGTACACGTCCGAGAGCAAATTCGAAGAATGGAAGAAAACCCGCGG
GATGGCCTTATCGGGCGAATGA
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Coding sequence (CDS) from alignment at chr18:336432..337053+

>NO18G00910.1 ID=NO18G00910.1|Name=NO18G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at chr18:336432..337053+ (Nannochloropsis oceanica)
ATGAGCAGCAGCAGTAGCACCCCCGTCGACCCCAACTACAGGGACGGCTC
GAGGGAAGGTCGTCTGAAGTTCAGCAAGAGGGCAGAGCAGCACCTCCGAG
ACGAACTGGCCCTGCACGCGCGGAAAGAATGCAAGGATGCCTTGGGCGCG
TTCGCGGCCTGCGCCAAAGAGAATGGGATGTTTGTCGTATTCAAGTGCCG
TGGACTCAACAATGCCATGAACGCCTGCTTAAGCGAGTACACGTCCGAGA
GCAAATTCGAAGAATGGAAGAAAACCCGCGGGATGGCCTTATCGGGCGAA
TGA
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Synonyms
Publications