NO18G00900, NO18G00900 (gene) Nannochloropsis oceanica

Overview
NameNO18G00900
Unique NameNO18G00900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1051
Alignment locationchr18:335338..336388 -

Link to JBrowse

Properties
Property NameValue
DescriptionCytochrome c oxidase assembly protein PET191
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:335338..336388 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018793Cyt_c_oxidase_assmbl_Pet191
Homology
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BLAST of NO18G00900 vs. NCBI_GenBank
Match: XP_005853993.1 (cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526] >XP_005854903.1 cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526] >EKU21447.1 cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526] >EKU22362.1 cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526] >EWM23290.1 Cytochrome c oxidase assembly protein PET191 [Nannochloropsis gaditana])

HSP 1 Score: 128.3 bits (321), Expect = 9.300e-27
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0 
Query:    1 MPKSCKEAAYALLACMQQQPCMKSGVALKECLKGEDVDACMVQRNAYFLCKRSQLDMRTRIRGTRVY 68
            MPKSCKEAAYALLACMQQQPCMK+G +L ECLK EDVDAC VQRNAYFLCKRSQLDMRTRIRGTRVY
Sbjct:    1 MPKSCKEAAYALLACMQQQPCMKTGGSLTECLKSEDVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY 67
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BLAST of NO18G00900 vs. NCBI_GenBank
Match: CBJ32736.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.4 bits (189), Expect = 1.900e-11
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0 
Query:    1 MPKSCKEAAYALLACMQQQPCMKSGVALKECLKGEDVDACMVQRNAYFLCKRSQLDMRTRIRGTRVY 68
            M + CKEAA AL ACM++  CMK G  LK+CLK  D + C     ++F CKR QLDMRTRIRG R +
Sbjct:    1 MGRDCKEAARALYACMKKTQCMKDGGRLKDCLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF 67
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BLAST of NO18G00900 vs. NCBI_GenBank
Match: OEU20330.1 (hypothetical protein FRACYDRAFT_168006 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 75.1 bits (183), Expect = 9.400e-11
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 0 
Query:    1 MPKSCKEAAYALLACMQQQPCMKSGV-ALKECLKGEDVD-----ACMVQRNAYFLCKRSQLDMRTRIRGTRVY 68
            MPK+C EAA +LL CM++  C K    ++ +CLK ++ D      C  QR AY+LCK SQL+MRTRIRGTR Y
Sbjct:    1 MPKACSEAALSLLTCMEESKCFKEDKHSVYDCLKKQNDDPIAAEECKAQRTAYYLCKHSQLNMRTRIRGTRAY 73
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BLAST of NO18G00900 vs. NCBI_GenBank
Match: GAX17823.1 (hypothetical protein FisN_18Hu023 [Fistulifera solaris])

HSP 1 Score: 70.5 bits (171), Expect = 2.300e-9
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 0 
Query:    1 MPKSCKEAAYALLACMQQQPC-MKSGVALKECLKGE-DVDACMVQRNAYFLCKRSQLDMRTRIRGTRVY 68
            MP SC EAA++LL CM++ PC ++   ++ +CL+   + D C   RNAY +CK SQL+MRTRIRG R Y
Sbjct:    1 MPHSCNEAAFSLLQCMEETPCVVEEKRSVYDCLQDPYESDPCRAFRNAYTMCKHSQLNMRTRIRGVRTY 69
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BLAST of NO18G00900 vs. NCBI_GenBank
Match: CCA28364.1 (hypothetical protein PITG_00849 [Albugo laibachii Nc14])

HSP 1 Score: 62.4 bits (150), Expect = 6.300e-7
Identity = 35/67 (52.24%), Postives = 43/67 (64.18%), Query Frame = 0 
Query:    1 MPKSCKEAAYALLACMQQQPCMKSGV-ALKECL-KGEDVDACMVQRNAYFLCKRSQLDMRTRIRGTR 66
            M KSC++ A AL  CM +Q CM +G   L+ECL + +  D C   R AYF CKR QLDMRTR RG +
Sbjct:   24 MGKSCRDMAQALRDCMIKQECMSTGERTLQECLHERKYADECHAYRVAYFECKRGQLDMRTRFRGPK 90
The following BLAST results are available for this feature:
BLAST of NO18G00900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005853993.19.300e-2791.04cytochrome c oxidase assembly mitochondrial [Nanno... [more]
CBJ32736.11.900e-1155.22expressed unknown protein [Ectocarpus siliculosus][more]
OEU20330.19.400e-1152.05hypothetical protein FRACYDRAFT_168006 [Fragilario... [more]
GAX17823.12.300e-950.72hypothetical protein FisN_18Hu023 [Fistulifera sol... [more]
CCA28364.16.300e-752.24hypothetical protein PITG_00849 [Albugo laibachii ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003941NSK003941Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00900.1NO18G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609145gene_9557Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100158g15gene7155Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00900.1NO18G00900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00900 ID=NO18G00900|Name=NO18G00900|organism=Nannochloropsis oceanica|type=gene|length=1051bp
GCGCAGCTAGACGAACAGCAAGCTATTTGTCAGATAGGTGGAAGGAAGGG
AATATGCCTGAGTGATGGTGTTGCTGTGCGTGCAGTAGAGCAGGAGGGCT
GTTGGGAGGGAGGGTGGTGCGTCAGGTGCTGCCCACTTGACGGCGAACAA
AAAAGCAAAACTCAGGGATTCCCTCATTTGCTTTCCATCCCTTTGGCTTG
CCACACGCGCACCAACAGTACAATAATACGCACAGGAAGCTATTGCCAAC
GTAGGGGACGCCGTGTTTGCTTTTCCTTGTTTGCAAGTTCCGATAGAGCC
TACTGCTCGCTTGCCGGGAAGAAGTAACATCATCACAACCGCGGCAGATA
AGACACATAGCACCATGgtaagctctacattctcctctatctgcgtcaat
ttgatcatatcatgccagtgaacgtgctgtgatccatgcttcacgacgat
ggtcgtgtgtatgtctcccccttccccctctccttcacacatcccacacc
ctcctttttcctaacccgcgcacgctccgcattccacagCCCAAATCTTG
CAAAGAAGCCGCCTACGCACTGCTGGCCTGCATGCAGCAACAACCGTGCA
TGAAGAGCGGGGTCGCGTTGAAGGAGTGTCTCAAGGGCGAGGACGTGGAT
GCTTGCATGgtacgtgaacgtggagagagtgaagcggcggttggggaagg
ttctcaagcactcgtggcgtggctccacattttcgttttctttcttgacc
tatctatcccctgattaaatctcaatttggaggggcatctgttcttggca
cagcttttcaaacctcaccacatgctgcacacactcactttcgcctctcc
tccctccctcgccccctcgccagGTACAACGAAATGCCTACTTCCTATGC
AAACGCTCTCAATTGGACATGCGCACCAGAATAAGAGGCACTCGAGTGTA
TTAGCCCTGTTGTGACAACATTGCCCCGCCACGCTCTAACAAGCCAAGCA
ACAAAAGAAAAAAATGGCAAAGTAAAACGTCTTCATAAGAGTTGAGGACA
G
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protein sequence of NO18G00900.1

>NO18G00900.1-protein ID=NO18G00900.1-protein|Name=NO18G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=68bp
MPKSCKEAAYALLACMQQQPCMKSGVALKECLKGEDVDACMVQRNAYFLC
KRSQLDMRTRIRGTRVY*
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Synonyms
Publications