NO18G00900.1, NO18G00900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00900.1
Unique NameNO18G00900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length665
Alignment locationchr18:335338..336388 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:335338..336388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00900.1 vs.
Match: XP_005853993.1 (cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526]; XP_005854903.1 cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526]; EKU21447.1 cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526]; EKU22362.1 cytochrome c oxidase assembly mitochondrial [Nannochloropsis gaditana CCMP526]; EWM23290.1 Cytochrome c oxidase assembly protein PET191 [Nannochloropsis gaditana])

HSP 1 Score: 128.3 bits (321), Expect = 9.300e-27
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0 
Query:    1 MPKSCKEAAYALLACMQQQPCMKSGVALKECLKGEDVDACMVQRNAYFLCKRSQLDMRTRIRGTRVY 68
            MPKSCKEAAYALLACMQQQPCMK+G +L ECLK EDVDAC VQRNAYFLCKRSQLDMRTRIRGTRVY
Sbjct:    1 MPKSCKEAAYALLACMQQQPCMKTGGSLTECLKSEDVDACSVQRNAYFLCKRSQLDMRTRIRGTRVY 67
The following BLAST results are available for this feature:
BLAST of NO18G00900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853993.19.300e-2791.04cytochrome c oxidase assembly mitochondrial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00900NO18G00900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00900.1NO18G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00900.1.cds1NO18G00900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00900.1.cds2NO18G00900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00900.1.cds3NO18G00900.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00900.1 ID=NO18G00900.1|Name=NO18G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=665bp
GCGCAGCTAGACGAACAGCAAGCTATTTGTCAGATAGGTGGAAGGAAGGG
AATATGCCTGAGTGATGGTGTTGCTGTGCGTGCAGTAGAGCAGGAGGGCT
GTTGGGAGGGAGGGTGGTGCGTCAGGTGCTGCCCACTTGACGGCGAACAA
AAAAGCAAAACTCAGGGATTCCCTCATTTGCTTTCCATCCCTTTGGCTTG
CCACACGCGCACCAACAGTACAATAATACGCACAGGAAGCTATTGCCAAC
GTAGGGGACGCCGTGTTTGCTTTTCCTTGTTTGCAAGTTCCGATAGAGCC
TACTGCTCGCTTGCCGGGAAGAAGTAACATCATCACAACCGCGGCAGATA
AGACACATAGCACCATGCCCAAATCTTGCAAAGAAGCCGCCTACGCACTG
CTGGCCTGCATGCAGCAACAACCGTGCATGAAGAGCGGGGTCGCGTTGAA
GGAGTGTCTCAAGGGCGAGGACGTGGATGCTTGCATGGTACAACGAAATG
CCTACTTCCTATGCAAACGCTCTCAATTGGACATGCGCACCAGAATAAGA
GGCACTCGAGTGTATTAGCCCTGTTGTGACAACATTGCCCCGCCACGCTC
TAACAAGCCAAGCAACAAAAGAAAAAAATGGCAAAGTAAAACGTCTTCAT
AAGAGTTGAGGACAG
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protein sequence of NO18G00900.1

>NO18G00900.1-protein ID=NO18G00900.1-protein|Name=NO18G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=68bp
MPKSCKEAAYALLACMQQQPCMKSGVALKECLKGEDVDACMVQRNAYFLC
KRSQLDMRTRIRGTRVY*
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mRNA from alignment at chr18:335338..336388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00900.1 ID=NO18G00900.1|Name=NO18G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1051bp|location=Sequence derived from alignment at chr18:335338..336388- (Nannochloropsis oceanica)
GCGCAGCTAGACGAACAGCAAGCTATTTGTCAGATAGGTGGAAGGAAGGG
AATATGCCTGAGTGATGGTGTTGCTGTGCGTGCAGTAGAGCAGGAGGGCT
GTTGGGAGGGAGGGTGGTGCGTCAGGTGCTGCCCACTTGACGGCGAACAA
AAAAGCAAAACTCAGGGATTCCCTCATTTGCTTTCCATCCCTTTGGCTTG
CCACACGCGCACCAACAGTACAATAATACGCACAGGAAGCTATTGCCAAC
GTAGGGGACGCCGTGTTTGCTTTTCCTTGTTTGCAAGTTCCGATAGAGCC
TACTGCTCGCTTGCCGGGAAGAAGTAACATCATCACAACCGCGGCAGATA
AGACACATAGCACCATGGTAAGCTCTACATTCTCCTCTATCTGCGTCAAT
TTGATCATATCATGCCAGTGAACGTGCTGTGATCCATGCTTCACGACGAT
GGTCGTGTGTATGTCTCCCCCTTCCCCCTCTCCTTCACACATCCCACACC
CTCCTTTTTCCTAACCCGCGCACGCTCCGCATTCCACAGCCCAAATCTTG
CAAAGAAGCCGCCTACGCACTGCTGGCCTGCATGCAGCAACAACCGTGCA
TGAAGAGCGGGGTCGCGTTGAAGGAGTGTCTCAAGGGCGAGGACGTGGAT
GCTTGCATGGTACGTGAACGTGGAGAGAGTGAAGCGGCGGTTGGGGAAGG
TTCTCAAGCACTCGTGGCGTGGCTCCACATTTTCGTTTTCTTTCTTGACC
TATCTATCCCCTGATTAAATCTCAATTTGGAGGGGCATCTGTTCTTGGCA
CAGCTTTTCAAACCTCACCACATGCTGCACACACTCACTTTCGCCTCTCC
TCCCTCCCTCGCCCCCTCGCCAGGTACAACGAAATGCCTACTTCCTATGC
AAACGCTCTCAATTGGACATGCGCACCAGAATAAGAGGCACTCGAGTGTA
TTAGCCCTGTTGTGACAACATTGCCCCGCCACGCTCTAACAAGCCAAGCA
ACAAAAGAAAAAAATGGCAAAGTAAAACGTCTTCATAAGAGTTGAGGACA
G
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Coding sequence (CDS) from alignment at chr18:335338..336388-

>NO18G00900.1 ID=NO18G00900.1|Name=NO18G00900.1|organism=Nannochloropsis oceanica|type=CDS|length=204bp|location=Sequence derived from alignment at chr18:335338..336388- (Nannochloropsis oceanica)
ATGCCCAAATCTTGCAAAGAAGCCGCCTACGCACTGCTGGCCTGCATGCA
GCAACAACCGTGCATGAAGAGCGGGGTCGCGTTGAAGGAGTGTCTCAAGG
GCGAGGACGTGGATGCTTGCATGGTACAACGAAATGCCTACTTCCTATGC
AAACGCTCTCAATTGGACATGCGCACCAGAATAAGAGGCACTCGAGTGTA
TTAG
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Synonyms
Publications