NO18G00860, NO18G00860 (gene) Nannochloropsis oceanica

Overview
NameNO18G00860
Unique NameNO18G00860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2044
Alignment locationchr18:323437..325480 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:323437..325480 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021414DUF3054
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO18G00860 vs. NCBI_GenBank
Match: EWM23298.1 (Protein of unknown function DUF3054 [Nannochloropsis gaditana])

HSP 1 Score: 313.5 bits (802), Expect = 7.100e-82
Identity = 177/275 (64.36%), Postives = 209/275 (76.00%), Query Frame = 0
Query:   12 QQPAVFLVLLLAIKLVAHVTHSFLLPSISS---PLLSRGAILIRPLSPSSSAVSRQGASPWALSAKKQKTLAEELDDLRLDESAMSEEEKKKLQGLRASYKLEEVLDFDGKTGEPLPAGASYTRKEDDPDYDPLDDAEDLSVAETAWSGQAGLDVLTQGNNNPTDLAARPFLALGDVAMLLLFASIGRSIHTGGISLDFQVLQTAAPFIGAWLLLAPLLGAFTPGATRSTGEAVKTVSLAWAVSVPMGLVGRGVIKGDIPPLPFMAVTMVTTWAL 284
            Q   + L+ LL +        +F++PSI S     + R  + +    PSSSA   + A+  AL A+KQ+TLAEELDDLRLDES MS EEKK+LQGLRASYKLE+VLDFDG   EPLP+ A  +  + DPDYDPLDDAEDL+VAETAWSGQAGLDV   G NN  D+ ARP LALGDV M LLFAS+GRSIHTGG+SLD QV+QTAAPFI AWL LAPLLGA+TP A+RSTG AVKTV  AWA++VP GLVGRG++KG++PP+PFMAVTMVTT  L
Sbjct:    6 QHNPIPLLFLLLVATSFPAVFAFVVPSIPSGRDSYILRTPMFVASKLPSSSASGSRQAAFGALLARKQRTLAEELDDLRLDESTMSAEEKKRLQGLRASYKLEDVLDFDGTNAEPLPS-APASPAQADPDYDPLDDAEDLAVAETAWSGQAGLDVRRVGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTLVL 279          
BLAST of NO18G00860 vs. NCBI_GenBank
Match: XP_005854905.1 (hypothetical protein NGA_0392200, partial [Nannochloropsis gaditana CCMP526] >EKU21449.1 hypothetical protein NGA_0392200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 312.4 bits (799), Expect = 1.600e-81
Identity = 179/274 (65.33%), Postives = 208/274 (75.91%), Query Frame = 0
Query:   10 RHQQPAVFLVLLLAIKLVAHVTHSFLLPSISSP---LLSRGAILIRPLSPSSSAVSRQGASPWALSAKKQKTLAEELDDLRLDESAMSEEEKKKLQGLRASYKLEEVLDFDGKTGEPLPAGASYTRKEDDPDYDPLDDAEDLSVAETAWSGQAGLDVLTQGNNNPTDLAARPFLALGDVAMLLLFASIGRSIHTGGISLDFQVLQTAAPFIGAWLLLAPLLGAFTPGATRSTGEAVKTVSLAWAVSVPMGLVGRGVIKGDIPPLPFMAVTMVTT 281
            +   P   L LLLA      V  +F+ PSI S     + R  + +    PSSSA   + A+  AL A+KQ+TLAEELDDLRLDES MS EEKK+LQGLRASYKLE+VLDFDG   EPLP+ A  +  + DPDYDPLDDAEDL+VAETAWSGQAGLDV   G NN  D+ ARP LALGDV M LLFAS+GRSIHTGG+SLD QV+QTAAPFI AWL LAPLLGA+TP A+RSTG AVKTV  AWA++VP GLVGRG++KG++PP+PFMAVTMVTT
Sbjct:    5 KQHNPIPLLFLLLAATSFPAV-FAFVAPSIPSGRDFYILRTPMFVASKLPSSSASGSRQAAFGALLARKQRTLAEELDDLRLDESTMSAEEKKRLQGLRASYKLEDVLDFDGTNAEPLPS-APASPAQADPDYDPLDDAEDLAVAETAWSGQAGLDVRRVGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTT 276          
BLAST of NO18G00860 vs. NCBI_GenBank
Match: XP_005717989.1 (unnamed protein product [Chondrus crispus] >CDF38120.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 124.0 bits (310), Expect = 8.000e-25
Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 0
Query:  148 LSVAETAWSGQAGLDVL-TQGNNNPTDLAARPFLALGDVAMLLLFASIGRSIHTGGISLDFQVLQTAAPFIGAWLLLAPLLGAFTPGATRSTGEAVKTVSLAWAVSVPMGLVGRGVIKGDIPPLPFMAVTMVTTWAL 284
            L+  +  WSGQAG+D   + G +N +DL  R  LALGD A  LLFA IG++ H G  SL+F V+QTA PFI AWL  +PLLGA+T  AT +    VKT + +WA++VPMG+  RGV+   +PP  F  VT+V+T+A+
Sbjct:  333 LTNEDVNWSGQAGVDTPGSSGTSNYSDLGKRLDLALGDTAAFLLFAYIGKASH-GDKSLNFGVVQTATPFIVAWLATSPLLGAYTRAATANVAATVKTFAKSWAIAVPMGIGLRGVLTDHVPPAVFAVVTLVSTFAI 468          
BLAST of NO18G00860 vs. NCBI_GenBank
Match: CBN76030.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 118.6 bits (296), Expect = 3.400e-23
Identity = 75/197 (38.07%), Postives = 110/197 (55.84%), Query Frame = 0
Query:   90 ESAMSEEEKKKLQGLRA-SYKLEEVLDFDGKTGEPLPAGASYTRKEDDPDYDPLDDAEDLSVAETAWSGQAGLDV--LTQGNNNPTDLAARPFLALGDVAMLLLFASIGRSIHTGGISLDFQVLQTAAPFIGAWLLLAPLLGAFTPGATRSTGEAVKTVSLAWAVSVPMGLVGRGVIK-GDIPPLPFMAVTMVTTWA 283
            +  M+ EE+++ +GL +    L EV     + G  +               D     +DL V +TAW GQAGLDV     G+ + +DL+AR  LA+GD   L +FA +GR+ H G  S D  VL TA PF+  WL ++PLLGA+T  AT + G A K +  AW +S+P+G+  R + K G++PP+PF   +M+ T A
Sbjct:  144 DDGMTAEERQRAEGLASIERSLAEVTAIQRQLGISV---------------DEXXXXKDLEVTDTAWRGQAGLDVTDAADGSRDWSDLSARKGLAVGDAVALTMFAYVGRASH-GMASFDLGVLLTALPFLIGWLAVSPLLGAYTRSATETPGGAAKALLPAWGISIPVGIFLRALSKGGEVPPVPFAVTSMIFTLA 324          
BLAST of NO18G00860 vs. NCBI_GenBank
Match: OSX76712.1 (hypothetical protein BU14_0178s0028 [Porphyra umbilicalis])

HSP 1 Score: 104.8 bits (260), Expect = 5.000e-19
Identity = 63/141 (44.68%), Postives = 83/141 (58.87%), Query Frame = 0
Query:  144 DAEDLSVAETAWSGQAGLDVLT-QGNNNPTDLAARPFLALGDVAMLLLFASIGRSIHTGGISLDFQVLQTAAPFIGAWLLLAPLLGAFTPGATRSTGEAVKTVSLAWAVSVPMGLVGRGVIKGDIPPLPFMAVTMVTTWAL 284
            D+  L+  +  WSGQAG+DV T     +  D+AA P LA GDVA+ L FA+IG + H    +    V  TAAPFI AWL +APL+GA+T  A  +   A  T + AW V VP GL  RGV+   +PP  F  VT+++T  L
Sbjct:  261 DSGVLTNDKVNWSGQAGVDVNTPAAPPSYADMAAHPLLAAGDVAVFLAFATIGAASHAANAN-PLSVTLTAAPFIVAWLAVAPLMGAYTRRAVGTYQGAAVTTARAWLVGVPSGLALRGVVTSHLPPPSFAVVTLLSTAVL 400          
BLAST of NO18G00860 vs. NCBI_GenBank
Match: GAX73629.1 (hypothetical protein CEUSTIGMA_g1080.t1 [Chlamydomonas eustigma])

HSP 1 Score: 97.8 bits (242), Expect = 6.200e-17
Identity = 58/148 (39.19%), Postives = 79/148 (53.38%), Query Frame = 0
Query:  137 PDYDPLDDAEDLSVAETAWSGQAGLDVLTQGNNNPTDLAARPFLALGDVAMLLLFASIGRSIHTGGISLDFQVLQTAAPFIGAWLLLAPLLGAFTPGAT-RSTGEAVKTVSLAWAVSVPMGLVGRGVIKGDIPPLPFMAVTMVTTWAL 284
            P   PL         + AW+G A +D            +    LA GD+  +L FA++GR I+ GG++ D + + TA PF+  W L +P LG F P A    T +A  T +  WAV  P+GLV RGV KG +PP PF+ V+MVTT  L
Sbjct:    8 PGGQPLKVVSVEKAGDEAWAGVAAID----RGEETASTSKLALLAAGDLVAILAFAAVGR-INHGGVA-DLETIYTALPFLAGWFLTSPFLGGFGPSANGTGTKDAALTAAKCWAVGTPLGLVIRGVSKGYVPPTPFIVVSMVTTGVL 149          
BLAST of NO18G00860 vs. NCBI_GenBank
Match: CEM05849.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 97.4 bits (241), Expect = 8.100e-17
Identity = 58/140 (41.43%), Postives = 80/140 (57.14%), Query Frame = 0
Query:  143 DDAEDLSVAETAWSGQAGLDVLTQGNNNPTDLAARPFLALGDVAMLLLFASIGRSIHTG--GISLDFQVLQTAAPFIGAWLLLAPLLGAFTPGATRSTGEAVKTVSLAWAVSVPMGLVGRGVIKGDIPPLPFMAVTMVTT 281
            D  ++  +  T W+GQAGL+V   G +N  D+  R  LA GD   LL FA  GR+ H       L   V QTAAPF+ AW  ++PLLGA+T  AT +  +  + +  AWAVS  MGL  R V +G+ PP  F+ +++V T
Sbjct:  104 DVVDERDIERTQWTGQAGLEVRRVGKSNWMDIPDRWLLASGDAVALLAFALAGRANHGAQQETILSPGVWQTAAPFLIAWFGISPLLGAYTHDATANYKKMAQVLIPAWAVSASMGLALRAVYRGEQPPGVFVVISLVAT 243          
BLAST of NO18G00860 vs. NCBI_GenBank
Match: XP_001693458.1 (predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 96.7 bits (239), Expect = 1.400e-16
Identity = 63/148 (42.57%), Postives = 80/148 (54.05%), Query Frame = 0
Query:  137 PDYDPLDDAEDLSVAETAWSGQAGLDVLTQGNNNPTDLAARPFLALGDVAMLLLFASIGRSIHTGGISLDFQVLQTAAPFIGAWLLLAPLLGAFTPGA-TRSTGEAVKTVSLAWAVSVPMGLVGRGVIKGDIPPLPFMAVTMVTTWAL 284
            PD  PL+     S  E AW+G A +D   +G ++  DL +   LA GD   LLLFA+ GRS H G  +     L TA PFI  W   AP LG F   A  +    A  T +  WAV VP+GLV RG+ +G +PP PF+AV+M  T  L
Sbjct:    4 PDGQPLEVVPVESTGEDAWAGVARVD---RGGSSAFDLQSALLLAAGDAVALLLFAAAGRSNH-GEATQVADALGTALPFIIGWFATAPFLGGFGADARKKGVPTAAATAAKCWAVGVPLGLVIRGLSRGYVPPTPFIAVSMGVTAVL 147          
BLAST of NO18G00860 vs. NCBI_GenBank
Match: PNW73705.1 (hypothetical protein CHLRE_13g569250v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 96.7 bits (239), Expect = 1.400e-16
Identity = 63/148 (42.57%), Postives = 80/148 (54.05%), Query Frame = 0
Query:  137 PDYDPLDDAEDLSVAETAWSGQAGLDVLTQGNNNPTDLAARPFLALGDVAMLLLFASIGRSIHTGGISLDFQVLQTAAPFIGAWLLLAPLLGAFTPGA-TRSTGEAVKTVSLAWAVSVPMGLVGRGVIKGDIPPLPFMAVTMVTTWAL 284
            PD  PL+     S  E AW+G A +D   +G ++  DL +   LA GD   LLLFA+ GRS H G  +     L TA PFI  W   AP LG F   A  +    A  T +  WAV VP+GLV RG+ +G +PP PF+AV+M  T  L
Sbjct:   99 PDGQPLEVVPVESTGEDAWAGVARVD---RGGSSAFDLQSALLLAAGDAVALLLFAAAGRSNH-GEATQVADALGTALPFIIGWFATAPFLGGFGADARKKGVPTAAATAAKCWAVGVPLGLVIRGLSRGYVPPTPFIAVSMGVTAVL 242          
BLAST of NO18G00860 vs. NCBI_GenBank
Match: GAQ80398.1 (hypothetical protein KFL_000530250 [Klebsormidium nitens])

HSP 1 Score: 95.1 bits (235), Expect = 4.000e-16
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 0
Query:  160 GLDVLTQGNNNPTDLAARPFLALGDVAMLLLFASIGRSIHTGGISLDFQVLQTAAPFIGAWLLLAPLLGAFTPGATRSTG-EAVKTVSLAWAVSVPMGLVGRGVIKGDIPPLPFMAVTMVTTWAL 284
            G+  + +G +N  +L     L  GD   LLLFA  G+  H+G  + DF V+ TAAPF+  W   A LLG +   AT S   +AV T  +AWAV +P+G+V RGV+KG +PP PF+ VT+ +T+ L
Sbjct:   51 GVAKIDRGEDN-MNLGRLALLVAGDTVALLLFALAGKVSHSG--TADFGVVPTAAPFLVGWFASATLLGGYGADATLSGPLKAVTTTGIAWAVGIPLGIVIRGVLKGQVPPTPFILVTLASTFVL 172          
The following BLAST results are available for this feature:
BLAST of NO18G00860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23298.17.100e-8264.36Protein of unknown function DUF3054 [Nannochlorops... [more]
XP_005854905.11.600e-8165.33hypothetical protein NGA_0392200, partial [Nannoch... [more]
XP_005717989.18.000e-2549.64unnamed protein product [Chondrus crispus] >CDF381... [more]
CBN76030.13.400e-2338.07conserved unknown protein [Ectocarpus siliculosus][more]
OSX76712.15.000e-1944.68hypothetical protein BU14_0178s0028 [Porphyra umbi... [more]
GAX73629.16.200e-1739.19hypothetical protein CEUSTIGMA_g1080.t1 [Chlamydom... [more]
CEM05849.18.100e-1741.43unnamed protein product [Vitrella brassicaformis C... [more]
XP_001693458.11.400e-1642.57predicted protein [Chlamydomonas reinhardtii][more]
PNW73705.11.400e-1642.57hypothetical protein CHLRE_13g569250v5 [Chlamydomo... [more]
GAQ80398.14.000e-1643.20hypothetical protein KFL_000530250 [Klebsormidium ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003935NSK003935Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00860.1NO18G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560686gene_9561Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100158g9gene7159Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00860.1NO18G00860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00860 ID=NO18G00860|Name=NO18G00860|organism=Nannochloropsis oceanica|type=gene|length=2044bp
TGCTAGGATAGAAGCCCGCTCGTTCTCCACCTCCATTATGCCCGCATTTG
TTCCATTTGCCCCATTACTCACACTATTTCTTTGGTGGCTTCCGTTCGAC
GATCACAACAAATTACGTAAGTCCTTCACAGGCAAAGCAGGGATTTGTAA
GAAATAGTGTAAAATACGTCACCTTTGAACGCATCCATTCCCTGCCGGCT
TATAATTTGTAGTGTTTAGGTATGTGAACATATTGTGTGTGCGTAGGCAT
TGAAAGCACCCACATAAACTAAAAAACACACTCCTTTATAGGCTCATCTC
CGGGATGTCCGCCAGTATTTAGGCGCGCAGGGATTTGAAGTCAAGGAAGA
CATTCTGGTTCGTAGCAACTGCTTTTTCGATTCTTTCGAAGACAAAATTG
GAGAGGATCATGAATACGTGGACTTCCATAGGGCCGAGGCTATGTTAAAA
AGCCAGTTACGCAGGGGAAAGAGGAGGCCGAGGATGTGGGAGATAGGGAA
TAAGGAGGTAGTGAAGGGCTTGTCGGGAAGAAGAAGAAGTATACGGACCA
AAAGACAATAGTACGAAGATATTTAAACTAAACTACCGTCAATTTTTCTC
GATGGCTTTGCCTTTGAATGTGTGAAACCGAGTGTTAACTGTGGCTAAAA
AGGGACAATGCTTCTAACATGGCAGCAAGCGCATGCCATTCCTCCACAGT
AAGGTGGCCACTGACGCCCTCCTTTTTACGTTGCAGATGCCAAAGCTTCC
CGCCTTGCCACTCACGTACAGCTAGCCCAAGCTCACTCCCTTTTCCATGT
CTAGCACTTATAAACACAGGGACGCTTCTTAGTGCGTTGCTGCCTGTGCC
CAAGCTCGCGACGTCTTTTAGTATCATCATTCGTCCAAGCCCGTCTTGAT
CAAGCGCGCTTCAAGAACAAGCACATACGCCAACAATGCGCAGCTCTAAT
GTGCTACAGTACCGCCACCAGCAGCCAGCCGTTTTCCTCGTCCTTCTTCT
TGCCATCAAACTAGTGGCACACGTTACCCACAGCTTCCTCCTCCCTTCCA
TATCATCACCACTACTAAGCCGCGGTGCTATCCTCATTCGTCCCCTGTCT
CCCTCCTCCTCTGCCGTCAGCCGGCAAGGCGCAAGTCCTTGGGCTCTAAG
CGCAAAAAAACAAAAGACTTTGGCAGAAGAATTGGACGATTTAAGGTTGG
ATGAGTCGGCTATGAGCGAGGAGGAGAAGAAGAAGCTGCAGGGCTTGCGG
GCCTCGTACAAATTGGAGGAAGTGCTGGATTTCGATGGCAAGACGGGAGA
Ggtaggttttgggttgaacgaggtacgggtaaatggagaaatggtaaggg
aaaatgatcttagaagagataagtagattgatttgccgtatcctcgtgtt
taatgcaccatacttatactatcagtcctaagttgcatccctccctccct
cgcctccctccccacactcctttcccctagCCCCTCCCCGCGGGCGCCTC
CTATACGCGCAAAGAAGACGACCCCGACTACGATCCCCTCGACGACGCCG
AGGACTTGTCAGTGGCCGAAACCGCCTGGTCTGGCCAAGCCGGGCTAGAC
GTCCTAACACAGGGTAACAATAATCCAACGGACCTCGCCGCCCGCCCCTT
CCTCGCTCTGGGTGATGTGGCCATGCTGCTCCTCTTTGCAAGCATCGGCC
GGTCCATTCACACAGGAGGCATTTCCCTCGACTTTCAGGTGCTTCAAACC
GCCGCTCCTTTCATTGGGGCCTGGTTACTGCTGGCCCCGCTGCTGGGTGC
GTTCACTCCGGGTGCCACGCGGTCGACAGGCGAAGCCGTTAAAACCGTTT
CGTTGGCATGGGCAGTGAGTGTGCCCATGGGCCTGGTGGGGAGAGGGGTC
ATCAAGGGGGATATCCCCCCGTTGCCATTCATGGCTGTGACGATGGTCAC
TACCTGGGCGTTGCTGGTGGTGTGGCGGGCGGCGGTGGTGGTGGTGGCAG
GGGGGGAGGTGAAGGGGGGGGGGGGAACAAGAAGAGTGGAGTGA
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protein sequence of NO18G00860.1

>NO18G00860.1-protein ID=NO18G00860.1-protein|Name=NO18G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MRSSNVLQYRHQQPAVFLVLLLAIKLVAHVTHSFLLPSISSPLLSRGAIL
IRPLSPSSSAVSRQGASPWALSAKKQKTLAEELDDLRLDESAMSEEEKKK
LQGLRASYKLEEVLDFDGKTGEPLPAGASYTRKEDDPDYDPLDDAEDLSV
AETAWSGQAGLDVLTQGNNNPTDLAARPFLALGDVAMLLLFASIGRSIHT
GGISLDFQVLQTAAPFIGAWLLLAPLLGAFTPGATRSTGEAVKTVSLAWA
VSVPMGLVGRGVIKGDIPPLPFMAVTMVTTWALLVVWRAAVVVVAGGEVK
GGGGTRRVE*
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Synonyms
Publications