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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr18 | genome | chr18:323437..325480 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G00860.1 vs.
Match: EWM23298.1 (Protein of unknown function DUF3054 [Nannochloropsis gaditana]) HSP 1 Score: 342.8 bits (878), Expect = 1.100e-90 Identity = 193/299 (64.55%), Postives = 227/299 (75.92%), Query Frame = 0
Query: 12 QQPAVFLVLLLAIKLVAHVTHSFLLPSISS---PLLSRGAILIRPLSPSSSAVSRQGASPWALSAKKQKTLAEELDDLRLDESAMSEEEKKKLQGLRASYKLEEVLDFDGKTGEPLPAGASYTRKEDDPDYDPLDDAEDLSVAETAWSGQAGLDVLTQGNNNPTDLAARPFLALGDVAMLLLFASIGRSIHTGGISLDFQVLQTAAPFIGAWLLLAPLLGAFTPGATRSTGEAVKTVSLAWAVSVPMGLVGRGVIKGDIPPLPFMAVTMVTTWALLVVWRAAVVVVAGGEVKGGGGTRR 308
Q + L+ LL + +F++PSI S + R + + PSSSA + A+ AL A+KQ+TLAEELDDLRLDES MS EEKK+LQGLRASYKLE+VLDFDG EPLP+ A + + DPDYDPLDDAEDL+VAETAWSGQAGLDV G NN D+ ARP LALGDV M LLFAS+GRSIHTGG+SLD QV+QTAAPFI AWL LAPLLGA+TP A+RSTG AVKTV AWA++VP GLVGRG++KG++PP+PFMAVTMVTT LL WR AVV VAGGEV+GG G +R
Sbjct: 6 QHNPIPLLFLLLVATSFPAVFAFVVPSIPSGRDSYILRTPMFVASKLPSSSASGSRQAAFGALLARKQRTLAEELDDLRLDESTMSAEEKKRLQGLRASYKLEDVLDFDGTNAEPLPS-APASPAQADPDYDPLDDAEDLAVAETAWSGQAGLDVRRVGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTLVLLTAWRVAVVAVAGGEVEGGEGNKR 303
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G00860.1 ID=NO18G00860.1|Name=NO18G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1865bp
TGCTAGGATAGAAGCCCGCTCGTTCTCCACCTCCATTATGCCCGCATTTG
TTCCATTTGCCCCATTACTCACACTATTTCTTTGGTGGCTTCCGTTCGAC
GATCACAACAAATTACGTAAGTCCTTCACAGGCAAAGCAGGGATTTGTAA
GAAATAGTGTAAAATACGTCACCTTTGAACGCATCCATTCCCTGCCGGCT
TATAATTTGTAGTGTTTAGGTATGTGAACATATTGTGTGTGCGTAGGCAT
TGAAAGCACCCACATAAACTAAAAAACACACTCCTTTATAGGCTCATCTC
CGGGATGTCCGCCAGTATTTAGGCGCGCAGGGATTTGAAGTCAAGGAAGA
CATTCTGGTTCGTAGCAACTGCTTTTTCGATTCTTTCGAAGACAAAATTG
GAGAGGATCATGAATACGTGGACTTCCATAGGGCCGAGGCTATGTTAAAA
AGCCAGTTACGCAGGGGAAAGAGGAGGCCGAGGATGTGGGAGATAGGGAA
TAAGGAGGTAGTGAAGGGCTTGTCGGGAAGAAGAAGAAGTATACGGACCA
AAAGACAATAGTACGAAGATATTTAAACTAAACTACCGTCAATTTTTCTC
GATGGCTTTGCCTTTGAATGTGTGAAACCGAGTGTTAACTGTGGCTAAAA
AGGGACAATGCTTCTAACATGGCAGCAAGCGCATGCCATTCCTCCACAGT
AAGGTGGCCACTGACGCCCTCCTTTTTACGTTGCAGATGCCAAAGCTTCC
CGCCTTGCCACTCACGTACAGCTAGCCCAAGCTCACTCCCTTTTCCATGT
CTAGCACTTATAAACACAGGGACGCTTCTTAGTGCGTTGCTGCCTGTGCC
CAAGCTCGCGACGTCTTTTAGTATCATCATTCGTCCAAGCCCGTCTTGAT
CAAGCGCGCTTCAAGAACAAGCACATACGCCAACAATGCGCAGCTCTAAT
GTGCTACAGTACCGCCACCAGCAGCCAGCCGTTTTCCTCGTCCTTCTTCT
TGCCATCAAACTAGTGGCACACGTTACCCACAGCTTCCTCCTCCCTTCCA
TATCATCACCACTACTAAGCCGCGGTGCTATCCTCATTCGTCCCCTGTCT
CCCTCCTCCTCTGCCGTCAGCCGGCAAGGCGCAAGTCCTTGGGCTCTAAG
CGCAAAAAAACAAAAGACTTTGGCAGAAGAATTGGACGATTTAAGGTTGG
ATGAGTCGGCTATGAGCGAGGAGGAGAAGAAGAAGCTGCAGGGCTTGCGG
GCCTCGTACAAATTGGAGGAAGTGCTGGATTTCGATGGCAAGACGGGAGA
GCCCCTCCCCGCGGGCGCCTCCTATACGCGCAAAGAAGACGACCCCGACT
ACGATCCCCTCGACGACGCCGAGGACTTGTCAGTGGCCGAAACCGCCTGG
TCTGGCCAAGCCGGGCTAGACGTCCTAACACAGGGTAACAATAATCCAAC
GGACCTCGCCGCCCGCCCCTTCCTCGCTCTGGGTGATGTGGCCATGCTGC
TCCTCTTTGCAAGCATCGGCCGGTCCATTCACACAGGAGGCATTTCCCTC
GACTTTCAGGTGCTTCAAACCGCCGCTCCTTTCATTGGGGCCTGGTTACT
GCTGGCCCCGCTGCTGGGTGCGTTCACTCCGGGTGCCACGCGGTCGACAG
GCGAAGCCGTTAAAACCGTTTCGTTGGCATGGGCAGTGAGTGTGCCCATG
GGCCTGGTGGGGAGAGGGGTCATCAAGGGGGATATCCCCCCGTTGCCATT
CATGGCTGTGACGATGGTCACTACCTGGGCGTTGCTGGTGGTGTGGCGGG
CGGCGGTGGTGGTGGTGGCAGGGGGGGAGGTGAAGGGGGGGGGGGGAACA
AGAAGAGTGGAGTGA back to topprotein sequence of NO18G00860.1 >NO18G00860.1-protein ID=NO18G00860.1-protein|Name=NO18G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MRSSNVLQYRHQQPAVFLVLLLAIKLVAHVTHSFLLPSISSPLLSRGAIL
IRPLSPSSSAVSRQGASPWALSAKKQKTLAEELDDLRLDESAMSEEEKKK
LQGLRASYKLEEVLDFDGKTGEPLPAGASYTRKEDDPDYDPLDDAEDLSV
AETAWSGQAGLDVLTQGNNNPTDLAARPFLALGDVAMLLLFASIGRSIHT
GGISLDFQVLQTAAPFIGAWLLLAPLLGAFTPGATRSTGEAVKTVSLAWA
VSVPMGLVGRGVIKGDIPPLPFMAVTMVTTWALLVVWRAAVVVVAGGEVK
GGGGTRRVE* back to topmRNA from alignment at chr18:323437..325480- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G00860.1 ID=NO18G00860.1|Name=NO18G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2044bp|location=Sequence derived from alignment at chr18:323437..325480- (Nannochloropsis oceanica)
TGCTAGGATAGAAGCCCGCTCGTTCTCCACCTCCATTATGCCCGCATTTG
TTCCATTTGCCCCATTACTCACACTATTTCTTTGGTGGCTTCCGTTCGAC
GATCACAACAAATTACGTAAGTCCTTCACAGGCAAAGCAGGGATTTGTAA
GAAATAGTGTAAAATACGTCACCTTTGAACGCATCCATTCCCTGCCGGCT
TATAATTTGTAGTGTTTAGGTATGTGAACATATTGTGTGTGCGTAGGCAT
TGAAAGCACCCACATAAACTAAAAAACACACTCCTTTATAGGCTCATCTC
CGGGATGTCCGCCAGTATTTAGGCGCGCAGGGATTTGAAGTCAAGGAAGA
CATTCTGGTTCGTAGCAACTGCTTTTTCGATTCTTTCGAAGACAAAATTG
GAGAGGATCATGAATACGTGGACTTCCATAGGGCCGAGGCTATGTTAAAA
AGCCAGTTACGCAGGGGAAAGAGGAGGCCGAGGATGTGGGAGATAGGGAA
TAAGGAGGTAGTGAAGGGCTTGTCGGGAAGAAGAAGAAGTATACGGACCA
AAAGACAATAGTACGAAGATATTTAAACTAAACTACCGTCAATTTTTCTC
GATGGCTTTGCCTTTGAATGTGTGAAACCGAGTGTTAACTGTGGCTAAAA
AGGGACAATGCTTCTAACATGGCAGCAAGCGCATGCCATTCCTCCACAGT
AAGGTGGCCACTGACGCCCTCCTTTTTACGTTGCAGATGCCAAAGCTTCC
CGCCTTGCCACTCACGTACAGCTAGCCCAAGCTCACTCCCTTTTCCATGT
CTAGCACTTATAAACACAGGGACGCTTCTTAGTGCGTTGCTGCCTGTGCC
CAAGCTCGCGACGTCTTTTAGTATCATCATTCGTCCAAGCCCGTCTTGAT
CAAGCGCGCTTCAAGAACAAGCACATACGCCAACAATGCGCAGCTCTAAT
GTGCTACAGTACCGCCACCAGCAGCCAGCCGTTTTCCTCGTCCTTCTTCT
TGCCATCAAACTAGTGGCACACGTTACCCACAGCTTCCTCCTCCCTTCCA
TATCATCACCACTACTAAGCCGCGGTGCTATCCTCATTCGTCCCCTGTCT
CCCTCCTCCTCTGCCGTCAGCCGGCAAGGCGCAAGTCCTTGGGCTCTAAG
CGCAAAAAAACAAAAGACTTTGGCAGAAGAATTGGACGATTTAAGGTTGG
ATGAGTCGGCTATGAGCGAGGAGGAGAAGAAGAAGCTGCAGGGCTTGCGG
GCCTCGTACAAATTGGAGGAAGTGCTGGATTTCGATGGCAAGACGGGAGA
GGTAGGTTTTGGGTTGAACGAGGTACGGGTAAATGGAGAAATGGTAAGGG
AAAATGATCTTAGAAGAGATAAGTAGATTGATTTGCCGTATCCTCGTGTT
TAATGCACCATACTTATACTATCAGTCCTAAGTTGCATCCCTCCCTCCCT
CGCCTCCCTCCCCACACTCCTTTCCCCTAGCCCCTCCCCGCGGGCGCCTC
CTATACGCGCAAAGAAGACGACCCCGACTACGATCCCCTCGACGACGCCG
AGGACTTGTCAGTGGCCGAAACCGCCTGGTCTGGCCAAGCCGGGCTAGAC
GTCCTAACACAGGGTAACAATAATCCAACGGACCTCGCCGCCCGCCCCTT
CCTCGCTCTGGGTGATGTGGCCATGCTGCTCCTCTTTGCAAGCATCGGCC
GGTCCATTCACACAGGAGGCATTTCCCTCGACTTTCAGGTGCTTCAAACC
GCCGCTCCTTTCATTGGGGCCTGGTTACTGCTGGCCCCGCTGCTGGGTGC
GTTCACTCCGGGTGCCACGCGGTCGACAGGCGAAGCCGTTAAAACCGTTT
CGTTGGCATGGGCAGTGAGTGTGCCCATGGGCCTGGTGGGGAGAGGGGTC
ATCAAGGGGGATATCCCCCCGTTGCCATTCATGGCTGTGACGATGGTCAC
TACCTGGGCGTTGCTGGTGGTGTGGCGGGCGGCGGTGGTGGTGGTGGCAG
GGGGGGAGGTGAAGGGGGGGGGGGGAACAAGAAGAGTGGAGTGA back to topCoding sequence (CDS) from alignment at chr18:323437..325480- >NO18G00860.1 ID=NO18G00860.1|Name=NO18G00860.1|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at chr18:323437..325480- (Nannochloropsis oceanica)
ATGCGCAGCTCTAATGTGCTACAGTACCGCCACCAGCAGCCAGCCGTTTT
CCTCGTCCTTCTTCTTGCCATCAAACTAGTGGCACACGTTACCCACAGCT
TCCTCCTCCCTTCCATATCATCACCACTACTAAGCCGCGGTGCTATCCTC
ATTCGTCCCCTGTCTCCCTCCTCCTCTGCCGTCAGCCGGCAAGGCGCAAG
TCCTTGGGCTCTAAGCGCAAAAAAACAAAAGACTTTGGCAGAAGAATTGG
ACGATTTAAGGTTGGATGAGTCGGCTATGAGCGAGGAGGAGAAGAAGAAG
CTGCAGGGCTTGCGGGCCTCGTACAAATTGGAGGAAGTGCTGGATTTCGA
TGGCAAGACGGGAGAGCCCCTCCCCGCGGGCGCCTCCTATACGCGCAAAG
AAGACGACCCCGACTACGATCCCCTCGACGACGCCGAGGACTTGTCAGTG
GCCGAAACCGCCTGGTCTGGCCAAGCCGGGCTAGACGTCCTAACACAGGG
TAACAATAATCCAACGGACCTCGCCGCCCGCCCCTTCCTCGCTCTGGGTG
ATGTGGCCATGCTGCTCCTCTTTGCAAGCATCGGCCGGTCCATTCACACA
GGAGGCATTTCCCTCGACTTTCAGGTGCTTCAAACCGCCGCTCCTTTCAT
TGGGGCCTGGTTACTGCTGGCCCCGCTGCTGGGTGCGTTCACTCCGGGTG
CCACGCGGTCGACAGGCGAAGCCGTTAAAACCGTTTCGTTGGCATGGGCA
GTGAGTGTGCCCATGGGCCTGGTGGGGAGAGGGGTCATCAAGGGGGATAT
CCCCCCGTTGCCATTCATGGCTGTGACGATGGTCACTACCTGGGCGTTGC
TGGTGGTGTGGCGGGCGGCGGTGGTGGTGGTGGCAGGGGGGGAGGTGAAG
GGGGGGGGGGGAACAAGAAGAGTGGAGTGA back to top
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