NO18G00700, NO18G00700 (gene) Nannochloropsis oceanica

Overview
NameNO18G00700
Unique NameNO18G00700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length821
Alignment locationchr18:283096..283916 -

Link to JBrowse

Properties
Property NameValue
DescriptionBEACH domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:283096..283916 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
Homology
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BLAST of NO18G00700 vs. NCBI_GenBank
Match: EWM23279.1 (BEACH domain protein [Nannochloropsis gaditana])

HSP 1 Score: 81.6 bits (200), Expect = 2.600e-12
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 0 
Query:   44 NVLNSPATLISACSALGDDCSPLTLLTGHTDGQIRLWV------LEYGREEREAMKENERYGMDC-RLILIQELAYALSASGGVPSKAPNTALTLSQDLLRFYSGDTMGVVCAWDASSSA 157
            N+L++PA LI+A   +GD   P+TL TGH DG++RLWV      +E GR    A+   +  G    RL L+ E    L        + P TALTL++D    Y+GD +G VC W ASS++
Sbjct:  997 NLLHAPAALITASCVVGDGSMPVTLATGHQDGRLRLWVVALEREVEGGRSPPMAVDMGQWQGGGANRLHLVGEFENDLHRPHARVGRVPVTALTLTRDARCLYAGDAVGRVCVWTASSTS 1116
The following BLAST results are available for this feature:
BLAST of NO18G00700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23279.12.600e-1240.00BEACH domain protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003925NSK003925Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00700.1NO18G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609210gene_9579Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100181g4gene7170Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00700.1NO18G00700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00700 ID=NO18G00700|Name=NO18G00700|organism=Nannochloropsis oceanica|type=gene|length=821bp
ATGGACGCTAATTTCGGCGCTGCATGCAAGTGGGATTACGAATGTAGCAg
tgagtgctaggcatagtatggtcgtgagcgtttgtagtttgaatcgtgtg
gcactaccgtggggaccttaaccgacgacagTTGGTGCGCCAATTGAAAC
TGGCTCCGACGAAGAGGCCGGCTTTGGATTCGgtgagtgattcgatgact
ctctatatagatgaattgacggagaccattgttttgaccgtgggggtaag
catatatgtctatgacgcgaatggctctccgttaacatatttgaatctga
gcactttgcccttgcgcaagagcccagtaggagccaacaaccccgactac
aacatcaggtcccgttccttattctcatttccaccaacaacagATGAAAG
CTCTTATGAGATCATGGCGACGAACGTGTTGAATTCCCCAGCTACTCTTA
TCTCGGCTTGTTCTGCATTAGGTGATGATTGCTCGCCCCTCACTCTTTTG
ACGGGGCACACAGACGGGCAGATCCGCTTATGGGTGTTGGAGTACGGCAG
GGAAGAAAGGGAGGCCATGAAGGAGAATGAGAGATACGGAATGGACTGTC
GTTTAATATTGATACAGGAGTTGGCGTATGCGTTGTCGGCATCGGGAGGG
GTGCCCAGTAAGGCGCCTAATACGGCGTTGACTTTATCGCAGGATTTGCT
ACGGTTTTACTCTGGAGATACGATGGGGGTAGTGTGTGCATGGGACGCCT
CGTCCTCTGCTCCTTACTTTGGTACTCTAAAAAGGAATCACGCCCATGCC
TCGGCTAAATGGATGAAGTAG
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protein sequence of NO18G00700.1

>NO18G00700.1-protein ID=NO18G00700.1-protein|Name=NO18G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MDANFGAACKWDYECSIGAPIETGSDEEAGFGFDESSYEIMATNVLNSPA
TLISACSALGDDCSPLTLLTGHTDGQIRLWVLEYGREEREAMKENERYGM
DCRLILIQELAYALSASGGVPSKAPNTALTLSQDLLRFYSGDTMGVVCAW
DASSSAPYFGTLKRNHAHASAKWMK*
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Synonyms
Publications