NO18G00700.1, NO18G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00700.1
Unique NameNO18G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length528
Alignment locationchr18:283096..283916 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:283096..283916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00700.1 vs.
Match: EWM23279.1 (BEACH domain protein [Nannochloropsis gaditana])

HSP 1 Score: 81.6 bits (200), Expect = 2.600e-12
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 0 
Query:   44 NVLNSPATLISACSALGDDCSPLTLLTGHTDGQIRLWV------LEYGREEREAMKENERYGMDC-RLILIQELAYALSASGGVPSKAPNTALTLSQDLLRFYSGDTMGVVCAWDASSSA 157
            N+L++PA LI+A   +GD   P+TL TGH DG++RLWV      +E GR    A+   +  G    RL L+ E    L        + P TALTL++D    Y+GD +G VC W ASS++
Sbjct:  997 NLLHAPAALITASCVVGDGSMPVTLATGHQDGRLRLWVVALEREVEGGRSPPMAVDMGQWQGGGANRLHLVGEFENDLHRPHARVGRVPVTALTLTRDARCLYAGDAVGRVCVWTASSTS 1116
The following BLAST results are available for this feature:
BLAST of NO18G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23279.12.600e-1240.00BEACH domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00700NO18G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00700.1NO18G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00700.1.cds1NO18G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00700.1.cds2NO18G00700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00700.1.cds3NO18G00700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00700.1 ID=NO18G00700.1|Name=NO18G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=528bp
ATGGACGCTAATTTCGGCGCTGCATGCAAGTGGGATTACGAATGTAGCAT
TGGTGCGCCAATTGAAACTGGCTCCGACGAAGAGGCCGGCTTTGGATTCG
ATGAAAGCTCTTATGAGATCATGGCGACGAACGTGTTGAATTCCCCAGCT
ACTCTTATCTCGGCTTGTTCTGCATTAGGTGATGATTGCTCGCCCCTCAC
TCTTTTGACGGGGCACACAGACGGGCAGATCCGCTTATGGGTGTTGGAGT
ACGGCAGGGAAGAAAGGGAGGCCATGAAGGAGAATGAGAGATACGGAATG
GACTGTCGTTTAATATTGATACAGGAGTTGGCGTATGCGTTGTCGGCATC
GGGAGGGGTGCCCAGTAAGGCGCCTAATACGGCGTTGACTTTATCGCAGG
ATTTGCTACGGTTTTACTCTGGAGATACGATGGGGGTAGTGTGTGCATGG
GACGCCTCGTCCTCTGCTCCTTACTTTGGTACTCTAAAAAGGAATCACGC
CCATGCCTCGGCTAAATGGATGAAGTAG
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protein sequence of NO18G00700.1

>NO18G00700.1-protein ID=NO18G00700.1-protein|Name=NO18G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MDANFGAACKWDYECSIGAPIETGSDEEAGFGFDESSYEIMATNVLNSPA
TLISACSALGDDCSPLTLLTGHTDGQIRLWVLEYGREEREAMKENERYGM
DCRLILIQELAYALSASGGVPSKAPNTALTLSQDLLRFYSGDTMGVVCAW
DASSSAPYFGTLKRNHAHASAKWMK*
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mRNA from alignment at chr18:283096..283916-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00700.1 ID=NO18G00700.1|Name=NO18G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=821bp|location=Sequence derived from alignment at chr18:283096..283916- (Nannochloropsis oceanica)
ATGGACGCTAATTTCGGCGCTGCATGCAAGTGGGATTACGAATGTAGCAG
TGAGTGCTAGGCATAGTATGGTCGTGAGCGTTTGTAGTTTGAATCGTGTG
GCACTACCGTGGGGACCTTAACCGACGACAGTTGGTGCGCCAATTGAAAC
TGGCTCCGACGAAGAGGCCGGCTTTGGATTCGGTGAGTGATTCGATGACT
CTCTATATAGATGAATTGACGGAGACCATTGTTTTGACCGTGGGGGTAAG
CATATATGTCTATGACGCGAATGGCTCTCCGTTAACATATTTGAATCTGA
GCACTTTGCCCTTGCGCAAGAGCCCAGTAGGAGCCAACAACCCCGACTAC
AACATCAGGTCCCGTTCCTTATTCTCATTTCCACCAACAACAGATGAAAG
CTCTTATGAGATCATGGCGACGAACGTGTTGAATTCCCCAGCTACTCTTA
TCTCGGCTTGTTCTGCATTAGGTGATGATTGCTCGCCCCTCACTCTTTTG
ACGGGGCACACAGACGGGCAGATCCGCTTATGGGTGTTGGAGTACGGCAG
GGAAGAAAGGGAGGCCATGAAGGAGAATGAGAGATACGGAATGGACTGTC
GTTTAATATTGATACAGGAGTTGGCGTATGCGTTGTCGGCATCGGGAGGG
GTGCCCAGTAAGGCGCCTAATACGGCGTTGACTTTATCGCAGGATTTGCT
ACGGTTTTACTCTGGAGATACGATGGGGGTAGTGTGTGCATGGGACGCCT
CGTCCTCTGCTCCTTACTTTGGTACTCTAAAAAGGAATCACGCCCATGCC
TCGGCTAAATGGATGAAGTAG
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Coding sequence (CDS) from alignment at chr18:283096..283916-

>NO18G00700.1 ID=NO18G00700.1|Name=NO18G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=528bp|location=Sequence derived from alignment at chr18:283096..283916- (Nannochloropsis oceanica)
ATGGACGCTAATTTCGGCGCTGCATGCAAGTGGGATTACGAATGTAGCAT
TGGTGCGCCAATTGAAACTGGCTCCGACGAAGAGGCCGGCTTTGGATTCG
ATGAAAGCTCTTATGAGATCATGGCGACGAACGTGTTGAATTCCCCAGCT
ACTCTTATCTCGGCTTGTTCTGCATTAGGTGATGATTGCTCGCCCCTCAC
TCTTTTGACGGGGCACACAGACGGGCAGATCCGCTTATGGGTGTTGGAGT
ACGGCAGGGAAGAAAGGGAGGCCATGAAGGAGAATGAGAGATACGGAATG
GACTGTCGTTTAATATTGATACAGGAGTTGGCGTATGCGTTGTCGGCATC
GGGAGGGGTGCCCAGTAAGGCGCCTAATACGGCGTTGACTTTATCGCAGG
ATTTGCTACGGTTTTACTCTGGAGATACGATGGGGGTAGTGTGTGCATGG
GACGCCTCGTCCTCTGCTCCTTACTTTGGTACTCTAAAAAGGAATCACGC
CCATGCCTCGGCTAAATGGATGAAGTAG
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Synonyms
Publications