NO18G00630, NO18G00630 (gene) Nannochloropsis oceanica

Overview
NameNO18G00630
Unique NameNO18G00630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1869
Alignment locationchr18:266063..267931 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:266063..267931 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G00630 vs. NCBI_GenBank
Match: EWM23273.1 (hypothetical protein Naga_101087g2 [Nannochloropsis gaditana])

HSP 1 Score: 115.5 bits (288), Expect = 4.800e-22
Identity = 72/148 (48.65%), Postives = 82/148 (55.41%), Query Frame = 0 
Query:  204 APPTDHAYSREGDQRMGLDYYYYYQPNNLNPRLP---NGGGXXXXXXXXXXXXXXXXXPVLSXXXXXXXXXXXXXXXXSQDDSGLFTSRLNLNFPQPSKPVGGSASSIVDEYLVGLGGEGGTTASSASTTNALSLEGVGNIAPRPIRP 349
            APPTDHA++ E D R  LDY+YYYQPN+LNPRLP   NG G                    S                SQDD+GLF   LNLN  QP K       S+V EYL   G +GGTTAS AST NA+SLEG+ N+APRPIRP
Sbjct:  171 APPTDHAFAPEHDPRNELDYFYYYQPNSLNPRLPMEENGKGGGEDGEVAALPAEALSGLASS--------------GGSQDDTGLFGPHLNLNLAQPLK-ASAPGGSMVAEYLSNFGAKGGTTASGASTANAMSLEGM-NVAPRPIRP 302
The following BLAST results are available for this feature:
BLAST of NO18G00630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23273.14.800e-2248.65hypothetical protein Naga_101087g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00630.1NO18G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101087g2gene7175Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00630.1NO18G00630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00630 ID=NO18G00630|Name=NO18G00630|organism=Nannochloropsis oceanica|type=gene|length=1869bp
ATGCTTTTCACACCCATACAGCAGTCATGCGAgtacgagcgtgacctctg
cttctcctttcatctctctgtgggggacacgacgttggtggtgtctgttg
ccctagcctcctgtctctccttccatcattgcaccccctcccatccttac
ccttcccatctcacctaccgacgaacctatacaactacagGCCCCACTTG
GGGGTAACCAACGAAAAGGACAAGCAGGGGGAAACGCCGCGTTTGTCCAG
CAGCAGCAGCAGGAGTAGCAGCAGCGGCAGCAGTAGCCGCAGCCGgtcga
gtagctagagaggaaaacacgacgacgacgacgctccgttgattttgtac
agtgagggactcctctctctatacatacacagatataaaacacacataga
cgtgacagagagtttgttcccagccggttttgcgactctagcagcgtacc
accagGCAAGGCAAGCACAAGAGCAGCAGCAGGACAACAAGAAAAGGAGT
GAGCAAGAGGTCTGTCAAGGTGTCTCCTGTGACTGAACAACCGCTTGCTG
TCGCCGCTGCGTTAGCGTTTGAGAGCGGTCATCGGGAGAGTGAGCAACCG
CAGAAGCAGCTGGAGCATCAAGAGCAGCACCAGCAGCAGCACCAGCAGCA
GCACCAGCAGCAGTCTAGTGACGAGGAGCCCGGGCACTCCAATTACCACC
AGCTGAGCTTCATAACGGACATGCTAGGCGACCGGACGATGAACGGTCAC
GGCAGCAACAGTAGCAGCAGCAGCAATAGCAACAGCGGTGGTGGCGCAGA
CGGAAGTGTGGCCGGAGCGACTGCAGGAAGCAATTCAACCACCACCATAA
CCCGGGGGGAGGGAGCTCTGTACGATGTGGAGGGAGCAGGGGAGGTAGAC
CCTTCCTTTCTACAGCGATCGATCAGTGCCCCTCCGACAGATCATGCTTA
TTCTCGGGAAGGGGATCAGAGGATGGGCCTTGATTATTACTATTACTACC
AGCCCAATAATCTAAATCCGCGCCTGCCGAATGGAGGGGGAGAAGGAGCG
GGAGAGGGAGGGGCGGAGGGAGTAGCGAAAGGAGGGGTGACACCAGTGCT
GTCGCCTTCGTCCTCTGCGGTGCTCGGTGGTGGAGGGGGAGGAGCCGGGG
TGTCACAGGATGACAGCGGTCTATTCACTTCTCGTTTGAACTTGAATTTC
CCGCAGCCGTCTAAGCCCGTGGGGGGCTCGGCTTCCTCCATCGTTGATGA
ATATCTGGTGGGTTTAGGCGGTGAGGGAGGAACCACTGCCTCTTCCGCCT
CGACTACCAATGCCTTGTCTCTGGAGGGAGTGGGCAACATTGCTCCGCGG
CCCATCCGCCCTCCATCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCC
GGGGATGGGGGATGGAGGAGGGGGAGGGTCTCCTTCCCTGTCTGACAGCG
CGTTGTTGGGTTTGATCAATGGAGGAGAGGATGCTGTCGCAAGTGCTGGT
GTCGGTACTGGCGGTGCAACCTCGTCCTCATCCTCCTTCCCGGCCCGATC
ATCATCGCCGGTGTTGGGGTATGGAGGAAGGGAGGAAGGGAGGGATGGAG
GGAGCAGCAGGCCTGGAAGTCGACCGTCGAGTCCTGGGAGGGGAGGGAGG
GAAGGAGGAAGGGGGTCAGGGATGTACGGGCACCAGGGAGGGCGCTTAAC
GGGTGTGATGCCTCCTCTGCGAAGCGCAAGTGTTGGACTGCCGTTGATGA
ATGGAGGAGGAGGGGGGGGGGGGGAGTTCAATACCATCACCAACAGCAGC
AGCAGTACTATCCGCACCAGCACCAGCAGCCGCCTTCTAGGACGCATGCT
GCGAGCGTGGATATGCTGA
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protein sequence of NO18G00630.1

>NO18G00630.1-protein ID=NO18G00630.1-protein|Name=NO18G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MLFTPIQQSCEPHLGVTNEKDKQGETPRLSSSSSRSSSSGSSSRSRQGKH
KSSSRTTRKGVSKRSVKVSPVTEQPLAVAAALAFESGHRESEQPQKQLEH
QEQHQQQHQQQHQQQSSDEEPGHSNYHQLSFITDMLGDRTMNGHGSNSSS
SSNSNSGGGADGSVAGATAGSNSTTTITRGEGALYDVEGAGEVDPSFLQR
SISAPPTDHAYSREGDQRMGLDYYYYYQPNNLNPRLPNGGGEGAGEGGAE
GVAKGGVTPVLSPSSSAVLGGGGGGAGVSQDDSGLFTSRLNLNFPQPSKP
VGGSASSIVDEYLVGLGGEGGTTASSASTTNALSLEGVGNIAPRPIRPPS
LPPSLPPPLPPGMGDGGGGGSPSLSDSALLGLINGGEDAVASAGVGTGGA
TSSSSSFPARSSSPVLGYGGREEGRDGGSSRPGSRPSSPGRGGREGGRGS
GMYGHQGGRLTGVMPPLRSASVGLPLMNGGGGGGGEFNTITNSSSSTIRT
STSSRLLGRMLRAWIC*
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Synonyms
Publications