NO18G00630.1, NO18G00630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00630.1
Unique NameNO18G00630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1551
Alignment locationchr18:266063..267931 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:266063..267931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00630.1 vs.
Match: EWM23273.1 (hypothetical protein Naga_101087g2 [Nannochloropsis gaditana])

HSP 1 Score: 131.0 bits (328), Expect = 1.100e-26
Identity = 81/148 (54.73%), Postives = 96/148 (64.86%), Query Frame = 0 
Query:  204 APPTDHAYSREGDQRMGLDYYYYYQPNNLNPRLPNGGGEGAGEGGAEGVAKGGVTPVLSPSSSAVLGGGGGGAGVSQDDSGLFTSRLNLNFPQPSKPVGGSASSIVDEYLVGLGGEGGTTASSASTTNALSLEGVGNIAPRPIRPPSL 352
            APPTDHA++ E D R  LDY+YYYQPN+LNPRLP    E  G+GG E    G V  + + + S +   GG     SQDD+GLF   LNLN  QP K       S+V EYL   G +GGTTAS AST NA+SLEG+ N+APRPIRPPSL
Sbjct:  171 APPTDHAFAPEHDPRNELDYFYYYQPNSLNPRLPM---EENGKGGGE---DGEVAALPAEALSGLASSGG-----SQDDTGLFGPHLNLNLAQPLK-ASAPGGSMVAEYLSNFGAKGGTTASGASTANAMSLEGM-NVAPRPIRPPSL 305
The following BLAST results are available for this feature:
BLAST of NO18G00630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23273.11.100e-2654.73hypothetical protein Naga_101087g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00630NO18G00630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00630.1NO18G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00630.1.cds1NO18G00630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00630.1.cds2NO18G00630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00630.1.cds3NO18G00630.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00630.1 ID=NO18G00630.1|Name=NO18G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1551bp
ATGCTTTTCACACCCATACAGCAGTCATGCGAGCCCCACTTGGGGGTAAC
CAACGAAAAGGACAAGCAGGGGGAAACGCCGCGTTTGTCCAGCAGCAGCA
GCAGGAGTAGCAGCAGCGGCAGCAGTAGCCGCAGCCGGCAAGGCAAGCAC
AAGAGCAGCAGCAGGACAACAAGAAAAGGAGTGAGCAAGAGGTCTGTCAA
GGTGTCTCCTGTGACTGAACAACCGCTTGCTGTCGCCGCTGCGTTAGCGT
TTGAGAGCGGTCATCGGGAGAGTGAGCAACCGCAGAAGCAGCTGGAGCAT
CAAGAGCAGCACCAGCAGCAGCACCAGCAGCAGCACCAGCAGCAGTCTAG
TGACGAGGAGCCCGGGCACTCCAATTACCACCAGCTGAGCTTCATAACGG
ACATGCTAGGCGACCGGACGATGAACGGTCACGGCAGCAACAGTAGCAGC
AGCAGCAATAGCAACAGCGGTGGTGGCGCAGACGGAAGTGTGGCCGGAGC
GACTGCAGGAAGCAATTCAACCACCACCATAACCCGGGGGGAGGGAGCTC
TGTACGATGTGGAGGGAGCAGGGGAGGTAGACCCTTCCTTTCTACAGCGA
TCGATCAGTGCCCCTCCGACAGATCATGCTTATTCTCGGGAAGGGGATCA
GAGGATGGGCCTTGATTATTACTATTACTACCAGCCCAATAATCTAAATC
CGCGCCTGCCGAATGGAGGGGGAGAAGGAGCGGGAGAGGGAGGGGCGGAG
GGAGTAGCGAAAGGAGGGGTGACACCAGTGCTGTCGCCTTCGTCCTCTGC
GGTGCTCGGTGGTGGAGGGGGAGGAGCCGGGGTGTCACAGGATGACAGCG
GTCTATTCACTTCTCGTTTGAACTTGAATTTCCCGCAGCCGTCTAAGCCC
GTGGGGGGCTCGGCTTCCTCCATCGTTGATGAATATCTGGTGGGTTTAGG
CGGTGAGGGAGGAACCACTGCCTCTTCCGCCTCGACTACCAATGCCTTGT
CTCTGGAGGGAGTGGGCAACATTGCTCCGCGGCCCATCCGCCCTCCATCC
CTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCGGGGATGGGGGATGGAGG
AGGGGGAGGGTCTCCTTCCCTGTCTGACAGCGCGTTGTTGGGTTTGATCA
ATGGAGGAGAGGATGCTGTCGCAAGTGCTGGTGTCGGTACTGGCGGTGCA
ACCTCGTCCTCATCCTCCTTCCCGGCCCGATCATCATCGCCGGTGTTGGG
GTATGGAGGAAGGGAGGAAGGGAGGGATGGAGGGAGCAGCAGGCCTGGAA
GTCGACCGTCGAGTCCTGGGAGGGGAGGGAGGGAAGGAGGAAGGGGGTCA
GGGATGTACGGGCACCAGGGAGGGCGCTTAACGGGTGTGATGCCTCCTCT
GCGAAGCGCAAGTGTTGGACTGCCGTTGATGAATGGAGGAGGAGGGGGGG
GGGGGGAGTTCAATACCATCACCAACAGCAGCAGCAGTACTATCCGCACC
AGCACCAGCAGCCGCCTTCTAGGACGCATGCTGCGAGCGTGGATATGCTG
A
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protein sequence of NO18G00630.1

>NO18G00630.1-protein ID=NO18G00630.1-protein|Name=NO18G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MLFTPIQQSCEPHLGVTNEKDKQGETPRLSSSSSRSSSSGSSSRSRQGKH
KSSSRTTRKGVSKRSVKVSPVTEQPLAVAAALAFESGHRESEQPQKQLEH
QEQHQQQHQQQHQQQSSDEEPGHSNYHQLSFITDMLGDRTMNGHGSNSSS
SSNSNSGGGADGSVAGATAGSNSTTTITRGEGALYDVEGAGEVDPSFLQR
SISAPPTDHAYSREGDQRMGLDYYYYYQPNNLNPRLPNGGGEGAGEGGAE
GVAKGGVTPVLSPSSSAVLGGGGGGAGVSQDDSGLFTSRLNLNFPQPSKP
VGGSASSIVDEYLVGLGGEGGTTASSASTTNALSLEGVGNIAPRPIRPPS
LPPSLPPPLPPGMGDGGGGGSPSLSDSALLGLINGGEDAVASAGVGTGGA
TSSSSSFPARSSSPVLGYGGREEGRDGGSSRPGSRPSSPGRGGREGGRGS
GMYGHQGGRLTGVMPPLRSASVGLPLMNGGGGGGGEFNTITNSSSSTIRT
STSSRLLGRMLRAWIC*
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mRNA from alignment at chr18:266063..267931+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00630.1 ID=NO18G00630.1|Name=NO18G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp|location=Sequence derived from alignment at chr18:266063..267931+ (Nannochloropsis oceanica)
ATGCTTTTCACACCCATACAGCAGTCATGCGAGTACGAGCGTGACCTCTG
CTTCTCCTTTCATCTCTCTGTGGGGGACACGACGTTGGTGGTGTCTGTTG
CCCTAGCCTCCTGTCTCTCCTTCCATCATTGCACCCCCTCCCATCCTTAC
CCTTCCCATCTCACCTACCGACGAACCTATACAACTACAGGCCCCACTTG
GGGGTAACCAACGAAAAGGACAAGCAGGGGGAAACGCCGCGTTTGTCCAG
CAGCAGCAGCAGGAGTAGCAGCAGCGGCAGCAGTAGCCGCAGCCGGTCGA
GTAGCTAGAGAGGAAAACACGACGACGACGACGCTCCGTTGATTTTGTAC
AGTGAGGGACTCCTCTCTCTATACATACACAGATATAAAACACACATAGA
CGTGACAGAGAGTTTGTTCCCAGCCGGTTTTGCGACTCTAGCAGCGTACC
ACCAGGCAAGGCAAGCACAAGAGCAGCAGCAGGACAACAAGAAAAGGAGT
GAGCAAGAGGTCTGTCAAGGTGTCTCCTGTGACTGAACAACCGCTTGCTG
TCGCCGCTGCGTTAGCGTTTGAGAGCGGTCATCGGGAGAGTGAGCAACCG
CAGAAGCAGCTGGAGCATCAAGAGCAGCACCAGCAGCAGCACCAGCAGCA
GCACCAGCAGCAGTCTAGTGACGAGGAGCCCGGGCACTCCAATTACCACC
AGCTGAGCTTCATAACGGACATGCTAGGCGACCGGACGATGAACGGTCAC
GGCAGCAACAGTAGCAGCAGCAGCAATAGCAACAGCGGTGGTGGCGCAGA
CGGAAGTGTGGCCGGAGCGACTGCAGGAAGCAATTCAACCACCACCATAA
CCCGGGGGGAGGGAGCTCTGTACGATGTGGAGGGAGCAGGGGAGGTAGAC
CCTTCCTTTCTACAGCGATCGATCAGTGCCCCTCCGACAGATCATGCTTA
TTCTCGGGAAGGGGATCAGAGGATGGGCCTTGATTATTACTATTACTACC
AGCCCAATAATCTAAATCCGCGCCTGCCGAATGGAGGGGGAGAAGGAGCG
GGAGAGGGAGGGGCGGAGGGAGTAGCGAAAGGAGGGGTGACACCAGTGCT
GTCGCCTTCGTCCTCTGCGGTGCTCGGTGGTGGAGGGGGAGGAGCCGGGG
TGTCACAGGATGACAGCGGTCTATTCACTTCTCGTTTGAACTTGAATTTC
CCGCAGCCGTCTAAGCCCGTGGGGGGCTCGGCTTCCTCCATCGTTGATGA
ATATCTGGTGGGTTTAGGCGGTGAGGGAGGAACCACTGCCTCTTCCGCCT
CGACTACCAATGCCTTGTCTCTGGAGGGAGTGGGCAACATTGCTCCGCGG
CCCATCCGCCCTCCATCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCC
GGGGATGGGGGATGGAGGAGGGGGAGGGTCTCCTTCCCTGTCTGACAGCG
CGTTGTTGGGTTTGATCAATGGAGGAGAGGATGCTGTCGCAAGTGCTGGT
GTCGGTACTGGCGGTGCAACCTCGTCCTCATCCTCCTTCCCGGCCCGATC
ATCATCGCCGGTGTTGGGGTATGGAGGAAGGGAGGAAGGGAGGGATGGAG
GGAGCAGCAGGCCTGGAAGTCGACCGTCGAGTCCTGGGAGGGGAGGGAGG
GAAGGAGGAAGGGGGTCAGGGATGTACGGGCACCAGGGAGGGCGCTTAAC
GGGTGTGATGCCTCCTCTGCGAAGCGCAAGTGTTGGACTGCCGTTGATGA
ATGGAGGAGGAGGGGGGGGGGGGGAGTTCAATACCATCACCAACAGCAGC
AGCAGTACTATCCGCACCAGCACCAGCAGCCGCCTTCTAGGACGCATGCT
GCGAGCGTGGATATGCTGA
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Coding sequence (CDS) from alignment at chr18:266063..267931+

>NO18G00630.1 ID=NO18G00630.1|Name=NO18G00630.1|organism=Nannochloropsis oceanica|type=CDS|length=1551bp|location=Sequence derived from alignment at chr18:266063..267931+ (Nannochloropsis oceanica)
ATGCTTTTCACACCCATACAGCAGTCATGCGAGCCCCACTTGGGGGTAAC
CAACGAAAAGGACAAGCAGGGGGAAACGCCGCGTTTGTCCAGCAGCAGCA
GCAGGAGTAGCAGCAGCGGCAGCAGTAGCCGCAGCCGGCAAGGCAAGCAC
AAGAGCAGCAGCAGGACAACAAGAAAAGGAGTGAGCAAGAGGTCTGTCAA
GGTGTCTCCTGTGACTGAACAACCGCTTGCTGTCGCCGCTGCGTTAGCGT
TTGAGAGCGGTCATCGGGAGAGTGAGCAACCGCAGAAGCAGCTGGAGCAT
CAAGAGCAGCACCAGCAGCAGCACCAGCAGCAGCACCAGCAGCAGTCTAG
TGACGAGGAGCCCGGGCACTCCAATTACCACCAGCTGAGCTTCATAACGG
ACATGCTAGGCGACCGGACGATGAACGGTCACGGCAGCAACAGTAGCAGC
AGCAGCAATAGCAACAGCGGTGGTGGCGCAGACGGAAGTGTGGCCGGAGC
GACTGCAGGAAGCAATTCAACCACCACCATAACCCGGGGGGAGGGAGCTC
TGTACGATGTGGAGGGAGCAGGGGAGGTAGACCCTTCCTTTCTACAGCGA
TCGATCAGTGCCCCTCCGACAGATCATGCTTATTCTCGGGAAGGGGATCA
GAGGATGGGCCTTGATTATTACTATTACTACCAGCCCAATAATCTAAATC
CGCGCCTGCCGAATGGAGGGGGAGAAGGAGCGGGAGAGGGAGGGGCGGAG
GGAGTAGCGAAAGGAGGGGTGACACCAGTGCTGTCGCCTTCGTCCTCTGC
GGTGCTCGGTGGTGGAGGGGGAGGAGCCGGGGTGTCACAGGATGACAGCG
GTCTATTCACTTCTCGTTTGAACTTGAATTTCCCGCAGCCGTCTAAGCCC
GTGGGGGGCTCGGCTTCCTCCATCGTTGATGAATATCTGGTGGGTTTAGG
CGGTGAGGGAGGAACCACTGCCTCTTCCGCCTCGACTACCAATGCCTTGT
CTCTGGAGGGAGTGGGCAACATTGCTCCGCGGCCCATCCGCCCTCCATCC
CTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCGGGGATGGGGGATGGAGG
AGGGGGAGGGTCTCCTTCCCTGTCTGACAGCGCGTTGTTGGGTTTGATCA
ATGGAGGAGAGGATGCTGTCGCAAGTGCTGGTGTCGGTACTGGCGGTGCA
ACCTCGTCCTCATCCTCCTTCCCGGCCCGATCATCATCGCCGGTGTTGGG
GTATGGAGGAAGGGAGGAAGGGAGGGATGGAGGGAGCAGCAGGCCTGGAA
GTCGACCGTCGAGTCCTGGGAGGGGAGGGAGGGAAGGAGGAAGGGGGTCA
GGGATGTACGGGCACCAGGGAGGGCGCTTAACGGGTGTGATGCCTCCTCT
GCGAAGCGCAAGTGTTGGACTGCCGTTGATGAATGGAGGAGGAGGGGGGG
GGGGGGAGTTCAATACCATCACCAACAGCAGCAGCAGTACTATCCGCACC
AGCACCAGCAGCCGCCTTCTAGGACGCATGCTGCGAGCGTGGATATGCTG
A
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Synonyms
Publications