NO18G00520, NO18G00520 (gene) Nannochloropsis oceanica

Overview
NameNO18G00520
Unique NameNO18G00520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1704
Alignment locationchr18:213890..215593 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:213890..215593 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G00520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR041ngnoR041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00520.1NO18G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_102012g1gene7189Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00520.1NO18G00520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00520 ID=NO18G00520|Name=NO18G00520|organism=Nannochloropsis oceanica|type=gene|length=1704bp
CACAGGCAGGAGCGGGCAATGCAGGAGTAGCAACTATACTCAGGAGCAGC
GACAACGAAACCGATAGCACCAGGCCAAAATGACGAGAAGAGGTGGAGGA
GGGAGGAGGGAAGGGAGGGAGGGGAGGGAGGGGGGAGGGGTGTCTGCTCC
CTGCTTCTAACACCACATGTCTCCACACGCACATGCATACACAGCCTTTG
TCGCATTACTCATTCTCAGCTCCGCTCAAGCCTTCGTCATTCCCCCTTCC
TCCCTCCTGCCCTCCCTTCCCTCCCTATTCCGCCTCCATGCCACCACCAC
AACTTTCTCCGTGGAGAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCACCGCGGCGACTACCGCTCTCTGGCGTGATATTGCCCGG
CTTACCCACGCTGCTGCTCCGGCTCCCTCCACCCCTTCCTCCCTCCCGTC
CTCGTCCTCTTCCACGTACACTACCCTCAACGACTCCATCTTTCCTCCCA
CGCGTCTTGCCCGCCTCCTCTCCTTACAGCGCCAGCACCAACACGCGGCC
GTGGAAGCCGAGATGGACCACATCCATGCCCTGGCCCGTGCCCTCTTCCC
TTCCCCCAACGATTACAGACAACCGAAAAAGACCCAGTCCGACAAGGACA
AAAGCCAGAGAGGAGAAGGGAGGGGAGGAAGACGGGGAAGAGGAGGAAGT
GGTGCGCCGTCATTGCTAGTGACGTCACGCAAGCCCCCGGCGAATGAAGC
GGAGCGTTTGGCGGCAGTGGCGCTGGGCTTATTCCTCGAAATGGCCTCGA
CGAGGAAGGGgtgaggaggagggagggagggagggaggacgggcgggcag
gagggtggggccgggcgggttgacatgcatgcttttatttcactcgatat
tatgggattgccatcattcacttcgtacccctatctgtctatcccattat
tactgcccctcgcccttcctctacctcccgctaatgtgaccttcggcctc
ctcccctcacacacacccctccctccttccctccctccccttctcccagC
CCCCCCCTCCCTCCAGACTCCTGGTGCTACTCCTCTGTCATCTCCTGCCT
CCTCTCAGTAGACAAGCCTCACCTCGCCCTACTCATCCTCTCCAAAGCAC
TTAACGACGGCGCGTCCCTCCCCCCCCCTCCCGTCCCTCCAACTCTCCCT
CCCCAGCGCCCTCCCTCCGGCCCGGCCTGGAGAGTGGAGTGAAGGAGGTC
CTGGCCTCGGCTGTGGCGTCCCTCGAGGAGAAAGGCATGGATACCTTGGG
AGACATCGTGTGGAGGGAGGGAAGGAGGAAGGGGTGGGTGGAGGACTGCT
GGAGCGATGgtaagcaattttctctttttcctccccctccctccccccct
ccgtccttgcctactccgtccttgcccccctctctccttccctccattcg
tctcttgcgcattgtgcccttcaaagtaacacctatacgccccactttcc
aacacctctctccctccctcccccctccctccctccctcgcttaagTTCA
TCCAGGCGTGATGGATCTGCACAACAGGACGTTACCGGTGGCTCGGGCGG
CCGTTAGATACGTTTATGAAACCGCCCTGAGGGAGTGGAAGGGGGAGGGG
GGAAAGAGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGNN
NNNN
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protein sequence of NO18G00520.1

>NO18G00520.1-protein ID=NO18G00520.1-protein|Name=NO18G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MSPHAHAYTAFVALLILSSAQAFVIPPSSLLPSLPSLFRLHATTTTFSVE
KGSSSSSSSSSSSSSTAATTALWRDIARLTHAAAPAPSTPSSLPSSSSST
YTTLNDSIFPPTRLARLLSLQRQHQHAAVEAEMDHIHALARALFPSPNDY
RQPKKTQSDKDKSQRGEGRGGRRGRGGSGAPSLLVTSRKPPANEAERLAA
VALGLFLEMASTRKGPPLPPDSWCYSSVISCLLSVDKPHLALLILSKALN
DGASLPPPPVPPTLPPQRPPSGPAWRVE*
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Synonyms
Publications