|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:213890..215593 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G00520.1 vs.
Match: EWM23261.1 (hypothetical protein Naga_102012g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 72.4 bits (176), Expect = 2.500e-9 Identity = 60/126 (47.62%), Postives = 74/126 (58.73%), Query Frame = 0
Query: 9 TAFVALLILSSAQAFVIPPSSLLPSL--PSLFRLHATTTTFSVEKGSSSSSSSSSSSSSTAATTALWRDIARLTHAAAPAPSTPSSLPSSSSSTYTTLNDSIFPPTRLARLLSLQRQHQHAAVEAE 133
++FV L + AF +P SSLLP P + L ATT + K + AAT ALWRDIARL+ + P PSSL SS T LN++++PPTRLARLLSLQRQH HAAV+AE
Sbjct: 98 SSFVLLSSVHILYAFFLPSSSLLPLPFPPCILPLSATTAGTHLAK---------QNKGIQAATKALWRDIARLSKDPSTLPP-PSSL---SSPTPLVLNEALYPPTRLARLLSLQRQHDHAAVDAE 210
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G00520.1 ID=NO18G00520.1|Name=NO18G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp CACAGGCAGGAGCGGGCAATGCAGGAGTAGCAACTATACTCAGGAGCAGC GACAACGAAACCGATAGCACCAGGCCAAAATGACGAGAAGAGGTGGAGGA GGGAGGAGGGAAGGGAGGGAGGGGAGGGAGGGGGGAGGGGTGTCTGCTCC CTGCTTCTAACACCACATGTCTCCACACGCACATGCATACACAGCCTTTG TCGCATTACTCATTCTCAGCTCCGCTCAAGCCTTCGTCATTCCCCCTTCC TCCCTCCTGCCCTCCCTTCCCTCCCTATTCCGCCTCCATGCCACCACCAC AACTTTCTCCGTGGAGAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCACCGCGGCGACTACCGCTCTCTGGCGTGATATTGCCCGG CTTACCCACGCTGCTGCTCCGGCTCCCTCCACCCCTTCCTCCCTCCCGTC CTCGTCCTCTTCCACGTACACTACCCTCAACGACTCCATCTTTCCTCCCA CGCGTCTTGCCCGCCTCCTCTCCTTACAGCGCCAGCACCAACACGCGGCC GTGGAAGCCGAGATGGACCACATCCATGCCCTGGCCCGTGCCCTCTTCCC TTCCCCCAACGATTACAGACAACCGAAAAAGACCCAGTCCGACAAGGACA AAAGCCAGAGAGGAGAAGGGAGGGGAGGAAGACGGGGAAGAGGAGGAAGT GGTGCGCCGTCATTGCTAGTGACGTCACGCAAGCCCCCGGCGAATGAAGC GGAGCGTTTGGCGGCAGTGGCGCTGGGCTTATTCCTCGAAATGGCCTCGA CGAGGAAGGGCCCCCCCCTCCCTCCAGACTCCTGGTGCTACTCCTCTGTC ATCTCCTGCCTCCTCTCAGTAGACAAGCCTCACCTCGCCCTACTCATCCT CTCCAAAGCACTTAACGACGGCGCGTCCCTCCCCCCCCCTCCCGTCCCTC CAACTCTCCCTCCCCAGCGCCCTCCCTCCGGCCCGGCCTGGAGAGTGGAG TGAAGGAGGTCCTGGCCTCGGCTGTGGCGTCCCTCGAGGAGAAAGGCATG GATACCTTGGGAGACATCGTGTGGAGGGAGGGAAGGAGGAAGGGGTGGGT GGAGGACTGCTGGAGCGATGTTCATCCAGGCGTGATGGATCTGCACAACA GGACGTTACCGGTGGCTCGGGCGGCCGTTAGATACGTTTATGAAACCGCC CTGAGGGAGTGGAAGGGGGAGGGGGGAAAGAGAGGGAAGGAGGGAGGGAA GGAGGGAGGGAAGGAGGGAGGGNNNNNN back to topprotein sequence of NO18G00520.1 >NO18G00520.1-protein ID=NO18G00520.1-protein|Name=NO18G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp MSPHAHAYTAFVALLILSSAQAFVIPPSSLLPSLPSLFRLHATTTTFSVE KGSSSSSSSSSSSSSTAATTALWRDIARLTHAAAPAPSTPSSLPSSSSST YTTLNDSIFPPTRLARLLSLQRQHQHAAVEAEMDHIHALARALFPSPNDY RQPKKTQSDKDKSQRGEGRGGRRGRGGSGAPSLLVTSRKPPANEAERLAA VALGLFLEMASTRKGPPLPPDSWCYSSVISCLLSVDKPHLALLILSKALN DGASLPPPPVPPTLPPQRPPSGPAWRVE* back to topmRNA from alignment at chr18:213890..215593+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G00520.1 ID=NO18G00520.1|Name=NO18G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp|location=Sequence derived from alignment at chr18:213890..215593+ (Nannochloropsis oceanica) CACAGGCAGGAGCGGGCAATGCAGGAGTAGCAACTATACTCAGGAGCAGC
GACAACGAAACCGATAGCACCAGGCCAAAATGACGAGAAGAGGTGGAGGA
GGGAGGAGGGAAGGGAGGGAGGGGAGGGAGGGGGGAGGGGTGTCTGCTCC
CTGCTTCTAACACCACATGTCTCCACACGCACATGCATACACAGCCTTTG
TCGCATTACTCATTCTCAGCTCCGCTCAAGCCTTCGTCATTCCCCCTTCC
TCCCTCCTGCCCTCCCTTCCCTCCCTATTCCGCCTCCATGCCACCACCAC
AACTTTCTCCGTGGAGAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCACCGCGGCGACTACCGCTCTCTGGCGTGATATTGCCCGG
CTTACCCACGCTGCTGCTCCGGCTCCCTCCACCCCTTCCTCCCTCCCGTC
CTCGTCCTCTTCCACGTACACTACCCTCAACGACTCCATCTTTCCTCCCA
CGCGTCTTGCCCGCCTCCTCTCCTTACAGCGCCAGCACCAACACGCGGCC
GTGGAAGCCGAGATGGACCACATCCATGCCCTGGCCCGTGCCCTCTTCCC
TTCCCCCAACGATTACAGACAACCGAAAAAGACCCAGTCCGACAAGGACA
AAAGCCAGAGAGGAGAAGGGAGGGGAGGAAGACGGGGAAGAGGAGGAAGT
GGTGCGCCGTCATTGCTAGTGACGTCACGCAAGCCCCCGGCGAATGAAGC
GGAGCGTTTGGCGGCAGTGGCGCTGGGCTTATTCCTCGAAATGGCCTCGA
CGAGGAAGGGGTGAGGAGGAGGGAGGGAGGGAGGGAGGACGGGCGGGCAG
GAGGGTGGGGCCGGGCGGGTTGACATGCATGCTTTTATTTCACTCGATAT
TATGGGATTGCCATCATTCACTTCGTACCCCTATCTGTCTATCCCATTAT
TACTGCCCCTCGCCCTTCCTCTACCTCCCGCTAATGTGACCTTCGGCCTC
CTCCCCTCACACACACCCCTCCCTCCTTCCCTCCCTCCCCTTCTCCCAGC
CCCCCCCTCCCTCCAGACTCCTGGTGCTACTCCTCTGTCATCTCCTGCCT
CCTCTCAGTAGACAAGCCTCACCTCGCCCTACTCATCCTCTCCAAAGCAC
TTAACGACGGCGCGTCCCTCCCCCCCCCTCCCGTCCCTCCAACTCTCCCT
CCCCAGCGCCCTCCCTCCGGCCCGGCCTGGAGAGTGGAGTGAAGGAGGTC
CTGGCCTCGGCTGTGGCGTCCCTCGAGGAGAAAGGCATGGATACCTTGGG
AGACATCGTGTGGAGGGAGGGAAGGAGGAAGGGGTGGGTGGAGGACTGCT
GGAGCGATGGTAAGCAATTTTCTCTTTTTCCTCCCCCTCCCTCCCCCCCT
CCGTCCTTGCCTACTCCGTCCTTGCCCCCCTCTCTCCTTCCCTCCATTCG
TCTCTTGCGCATTGTGCCCTTCAAAGTAACACCTATACGCCCCACTTTCC
AACACCTCTCTCCCTCCCTCCCCCCTCCCTCCCTCCCTCGCTTAAGTTCA
TCCAGGCGTGATGGATCTGCACAACAGGACGTTACCGGTGGCTCGGGCGG
CCGTTAGATACGTTTATGAAACCGCCCTGAGGGAGTGGAAGGGGGAGGGG
GGAAAGAGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGNN
NNNN back to topCoding sequence (CDS) from alignment at chr18:213890..215593+ >NO18G00520.1 ID=NO18G00520.1|Name=NO18G00520.1|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr18:213890..215593+ (Nannochloropsis oceanica) ATGTCTCCACACGCACATGCATACACAGCCTTTGTCGCATTACTCATTCT CAGCTCCGCTCAAGCCTTCGTCATTCCCCCTTCCTCCCTCCTGCCCTCCC TTCCCTCCCTATTCCGCCTCCATGCCACCACCACAACTTTCTCCGTGGAG AAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCGC GGCGACTACCGCTCTCTGGCGTGATATTGCCCGGCTTACCCACGCTGCTG CTCCGGCTCCCTCCACCCCTTCCTCCCTCCCGTCCTCGTCCTCTTCCACG TACACTACCCTCAACGACTCCATCTTTCCTCCCACGCGTCTTGCCCGCCT CCTCTCCTTACAGCGCCAGCACCAACACGCGGCCGTGGAAGCCGAGATGG ACCACATCCATGCCCTGGCCCGTGCCCTCTTCCCTTCCCCCAACGATTAC AGACAACCGAAAAAGACCCAGTCCGACAAGGACAAAAGCCAGAGAGGAGA AGGGAGGGGAGGAAGACGGGGAAGAGGAGGAAGTGGTGCGCCGTCATTGC TAGTGACGTCACGCAAGCCCCCGGCGAATGAAGCGGAGCGTTTGGCGGCA GTGGCGCTGGGCTTATTCCTCGAAATGGCCTCGACGAGGAAGGGCCCCCC CCTCCCTCCAGACTCCTGGTGCTACTCCTCTGTCATCTCCTGCCTCCTCT CAGTAGACAAGCCTCACCTCGCCCTACTCATCCTCTCCAAAGCACTTAAC GACGGCGCGTCCCTCCCCCCCCCTCCCGTCCCTCCAACTCTCCCTCCCCA GCGCCCTCCCTCCGGCCCGGCCTGGAGAGTGGAGTGA back to top
|