NO18G00360, NO18G00360 (gene) Nannochloropsis oceanica

Overview
NameNO18G00360
Unique NameNO18G00360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3295
Alignment locationchr18:149855..153149 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:149855..153149 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G00360 vs. NCBI_GenBank
Match: EWM25014.1 (hypothetical protein Naga_100068g20 [Nannochloropsis gaditana])

HSP 1 Score: 367.9 bits (943), Expect = 3.600e-98
Identity = 184/378 (48.68%), Postives = 238/378 (62.96%), Query Frame = 0 
Query:   44 SETLRKSQEVRTKNLEKVPPQVVKALDHRLTLVPSWDMRITKEKLEQLGGVIMVDSSPVLSSGERSENVPNYAPKNFHITCQYCLKPFNGKNALRNFELHAIFWELYLAHPAL--------------------------------------------------LLPSTEADAD--------------VEKEHRGVYPCNSISRDIIIYMESKKPVLCNNQKKVWKLQGELHHDTDLFQGRAWLQVPVGMSWASWRLAEPCSMDSVVCCRASKNLEQYDTLRSHVFTWHDSGVFTSCAHCGRVYQNTRAFLAHGCVKKG-------YDKDETLIASCAQHMVGLLDASPDFANLFYNMMPLSSESKQMVFERVRQRLKN 351
            S  L ++QE R KNLEK+PP+ V+AL+  L+ +P+W +RITKEKLE LGG ++   SPVL  GERSE V +YAPKN+HI C++C K F GKNALRNFELHAIFW LY +HPA+                                                  L  S++A+A                E  H+  YPCNS++RD++++ME++KPVLCNNQKK++ L+G LHHDT LFQ RAWLQ+P   +W S +LA+P S+  V+ CR  K LE Y+TLRSH+F WHDSGVFTSC+HC RVYQNTRAFL HGCVKK          KD+T +ASC+Q M+  L+ SPDFA LFY +  L SE ++ VF+RV +RL++
Sbjct:  358 STILSQNQESRVKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEALGGRVL--GSPVLMEGERSEQVVDYAPKNYHIQCRHCGKNFLGKNALRNFELHAIFWTLYRSHPAIVRVGHAAASAAAAAMGLQWARVSNAEEGGTNAGMGCAHGDMPGSMSESGGLACSSDANAGKQNMDGAVRAAAQVFEGHHQLNYPCNSVARDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQNRAWLQIPASKTWESCKLADPTSLQDVLWCRGGKALEAYETLRSHIFAWHDSGVFTSCSHCKRVYQNTRAFLGHGCVKKSPIGMPADAQKDDTAVASCSQSMMSFLEVSPDFAQLFYQLRSLPSERREEVFDRVSKRLRS 733
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BLAST of NO18G00360 vs. NCBI_GenBank
Match: EWM23237.1 (hypothetical protein Naga_100917g1 [Nannochloropsis gaditana])

HSP 1 Score: 290.0 bits (741), Expect = 9.600e-75
Identity = 131/174 (75.29%), Postives = 155/174 (89.08%), Query Frame = 0 
Query:   54 RTKNLEKVPPQVVKALDHRLTLVPSWDMRITKEKLEQLGGVIMVDSSPVLSSGERSENVPNYAPKNFHITCQYCLKPFNGKNALRNFELHAIFWELYLAHPALLLPSTEADADVEKEHRGVYPCNSISRDIIIYMESKKPVLCNNQKKVWKLQGELHHDTDLFQGRAWLQVPVG 228
            R+K L +VP  V++ALD +L+ VP+WD RITKEKLEQLGGV+MVDSSPVLSS  R++ +  YAPK+FHI CQ+CLK FNGKNALRNFELHAIFWELYLAHPALLLPST+AD+ VEKEH G+YPCNSI+RD+++YMES+KPVLCNNQ+KVWKLQGEL HDT+ FQGRAWLQ+P G
Sbjct:  321 RSKKLTEVPSLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIKCQFCLKSFNGKNALRNFELHAIFWELYLAHPALLLPSTQADSKVEKEHGGLYPCNSIARDVVVYMESRKPVLCNNQRKVWKLQGELFHDTNPFQGRAWLQIPNG 494
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BLAST of NO18G00360 vs. NCBI_GenBank
Match: XP_005855705.1 (hypothetical protein NGA_0645600, partial [Nannochloropsis gaditana CCMP526] >EKU20657.1 hypothetical protein NGA_0645600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 96.3 bits (238), Expect = 2.000e-16
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = 0 
Query:   36 WLPGSESASETLRKSQEVRTKNLEKVPPQVVKALDHRLTLVPSWDMRITKEKLEQLGGVIMVDSSPVLSSGERSENVPNYAPKNFHI 123
            W   S+  +E   ++QE+R  NLE       KALD +L+ VP+WD RITKEKLEQLGGV+MVDSSPVLSS  R++ +  YAPK+FHI
Sbjct:  312 WSSRSKKLTEATTQAQELRLSNLE-------KALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHI 391
The following BLAST results are available for this feature:
BLAST of NO18G00360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM25014.13.600e-9848.68hypothetical protein Naga_100068g20 [Nannochlorops... [more]
EWM23237.19.600e-7575.29hypothetical protein Naga_100917g1 [Nannochloropsi... [more]
XP_005855705.12.000e-1656.32hypothetical protein NGA_0645600, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00360.1NO18G00360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605576gene_9810Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100917g1gene7212Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00360.1NO18G00360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00360 ID=NO18G00360|Name=NO18G00360|organism=Nannochloropsis oceanica|type=gene|length=3295bp
ATGCAGgtaggaagggagggaaggagggagggagggagggagggatggat
aaggcggctgcagtatgtcttcatggtatgatcttgtcctggaggaatga
gggaggaagacgacgtggacgagtgcagggactgagggagggagggaggg
agggagggagggagggagggagggagggagggagggagggagggagggag
ggagggagggatggataaggcggctgcagtatgtcttcatggtatgatct
tgtgcaataacgcttccttgttctttccctccctccctccctccctccct
ccctccctccctccctccctccctccctccctccctccctccctccctcc
ctcagTCCCTGCACTCGTCCACGTCGTCTTCCTCCCTCATTCCTCCAGGA
GGAGGAGGAGGAGGAGGAGGAGGGGGAGGATCAGAGGGAGGAGGGGGCGG
CATTTGGCTCCCGGGGAGTGAGAGCGCGAGTGAGgtgagaatgggaggga
gggcgggagggagggagggaggacgcattgacttccccctggcatccata
ccatcatgcatgcatacattcttactttccccacctcacatacatccata
cgtaattaactaccataccgccattcatacctacctacctacctacctac
ttatcactaatcgattaatttcaccatgcgtacatgcctaatcatttgtt
cgattgattaattcaccgatttagcagACGCTGAGAAAGTCTCAGGAAGT
TCGGACCAAAAATCTGGAGAAGgtaggcaaggagggagggggggaggggg
gaagtaaggacacgggaggagacaggccgctgacgtgcggtgggtgttca
tcccttcccctaccccttcctccctcccttcctccctccctccccagGTG
CCGCCTCAGGTCGTGAAGGCGCTAGACCACCGACTGACTCTCGTGCCCTC
CTGGGACATGCGCATCACGAAGGAGAAGCTCGAGCAACTCGGGGGTGTGA
TAATGGTCGACTCCTCCCCGgtacgtgccctccctccctccctccctccc
tccctccctccctctccgcgtttcttcctcttatctctctcctctctctc
cttcttttgtgcttcctttttccacccgaagggaagacccgaagggaaga
cacagccagccccagcagtgcgcacaatcttaccttacccttccgtccgt
ccctccctccctctccctccctcagGTCCTCTCCTCGGGAGAACGTTCCG
AGAACGTTCCAAACTACGCTCCCAAGAACTTCCACATCACATGCCAGTAC
TGTCTTAAGCCTTTCAACGgtacctccctcccccctccctccctctttcc
ctccctccctccctccttccttccctctcttcctccctccctctctctcc
ctccctcactccctccctcttaccgtcctcgatacgtttccttcccacca
tggtcttactctccctccctccctccctccctccctccctcccctcctcc
tttcttgtcagGTAAGAACGCCCTCCGCAATTTCGAGCTGCACGCCATTT
TTTGGGAGCTCTATCTCGCCCACCCGGCCCTCCTCCTCCCCTCCACCGAG
GCCGACGCCGACgtacgtgcactccctccctccctccctccttccctccc
tttcttactctactcctctccctccctctccttccctcccttcctccctc
actaggaacactgcggcatctgcctttgtgcctcaccctccctccctccc
tccctccctccctccctccctccctccctcccagGTGGAAAAAGAGCATC
GGGGGGTTTACCCTTGCAACAGCATCTCCCGCGACATAATCATCTACATG
gtgagggagggagggagggagggagggagggagggagggagggagggagg
gagggagggacatacacctttccctatgctgtacgtagtatcaagcgagt
tgctctaacctcacctccaccccgccctccgttccgccctccgtcccgcc
ctccgtcccgccctttgtcgctccctccccccagGAGAGCAAGAAGCCCG
TCCTGTGCAACAATCAAAAGAAAGTGTGGAAGTTGCAGGGGGAGCTGCAT
CACGACACCGACCTCTTCCAAGGTCGAGCGTGGCTACAAGTACCCGTCGG
CATgtacgcaagccctccctccctccctccctctctccctttcttttccc
ctccagctaccctccctctgtgcacggccttcctctgcttatctttctcc
ctccccctccctccctccctccctccctccctccctccctccctccctcc
ctcagGTCCTGGGCGTCCTGGAGGCTTGCGGAGCCTTGCTCCATGGACTC
GGTCGTCTGTTGCCGCGCCAGCAAAAATCTTGAGCAGTACGACACCCTCA
Ggtatgccctccctctctccctccctccctctctcgtttcctcatgccct
ccctccctccctccctccctccctccctccctccatctttccctctctct
gcatcccgtattcgacgattctttgattcccttatctccctccctccctc
cctccctccctccctccctccctccctccctccttccctccttccctccc
tccctcccgcagATCCCACGTCTTTACTTGGCATGACTCGGGCGTCTTTA
CCTCCTGCGCGCACTGTGGACGGGTTTACCAGAACACGCGCGCCTTCTTA
Ggtgaggaggaggggagggagaggaggagggatgcagggagggcgagagg
gagggagggagggagggagggagggagggagagagggcggagccacttga
gtcgcttactcacctaccttcctccaattcctcttccctccctcgttccc
tcgctccctccctccctccatccctccctccagCCCACGGGTGCGTGAAG
AAGGGCTATGATAAGGACGAGACTCTGATCGCCTCCTGCGCCCAGCATAT
GGTCGGCTTGTTGGACGCCAGgtgagagagagggagggagggcgggaggg
agggatgctttaattcagtgtgtggcatgcgtataaaggaaggtattaac
agccattcacccttctcccttacctcccttacctcccttcctccctccct
cctttttccctgagttcgaagaatccaagaaagaaagtcactgacaccct
ccctccctccctccctccctccctccctccctccttctccagCCCTGACT
TTGCTAACTTGTTTTACAACATGATGCCGCTGAGCTCCGAGTCGAAGCAA
ATGGTGTTTGAGAGAGTCAGACAGAGGCTGAAGAACTGTAGTTAG
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protein sequence of NO18G00360.1

>NO18G00360.1-protein ID=NO18G00360.1-protein|Name=NO18G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MQSLHSSTSSSSLIPPGGGGGGGGGGGSEGGGGGIWLPGSESASETLRKS
QEVRTKNLEKVPPQVVKALDHRLTLVPSWDMRITKEKLEQLGGVIMVDSS
PVLSSGERSENVPNYAPKNFHITCQYCLKPFNGKNALRNFELHAIFWELY
LAHPALLLPSTEADADVEKEHRGVYPCNSISRDIIIYMESKKPVLCNNQK
KVWKLQGELHHDTDLFQGRAWLQVPVGMSWASWRLAEPCSMDSVVCCRAS
KNLEQYDTLRSHVFTWHDSGVFTSCAHCGRVYQNTRAFLAHGCVKKGYDK
DETLIASCAQHMVGLLDASPDFANLFYNMMPLSSESKQMVFERVRQRLKN
CS*
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Synonyms
Publications