NO18G00360.1, NO18G00360.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G00360.1
Unique Name	NO18G00360.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1059
Alignment location	chr18:149855..153149 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:149855..153149 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO18G00360.1 vs.
Match: EWM23237.1 (hypothetical protein Naga_100917g1 [Nannochloropsis gaditana])

HSP 1 Score: 278.5 bits (711), Expect = 2.900e-71
Identity = 139/208 (66.83%), Postives = 166/208 (79.81%), Query Frame = 0

Query:   20 GGGGGGGGSEGGGGGIWLPGSESASETLRKSQEVRTKNLEKVPPQVVKALDHRLTLVPSWDMRITKEKLEQLGGVIMVDSSPVLSSGERSENVPNYAPKNFHITCQYCLKPFNGKNALRNFELHAIFWELYLAHPALLLPSTEADADVEKEHRGVYPCNSISRDIIIYMESKKPVLCNNQKKVWKLQGELHHDTDLFQGRAWLQVPVG 228
            G   GGG  E  G     P + +A  + R      +K L +VP  V++ALD +L+ VP+WD RITKEKLEQLGGV+MVDSSPVLSS  R++ +  YAPK+FHI CQ+CLK FNGKNALRNFELHAIFWELYLAHPALLLPST+AD+ VEKEH G+YPCNSI+RD+++YMES+KPVLCNNQ+KVWKLQGEL HDT+ FQGRAWLQ+P G
Sbjct:  298 GNAKGGGDDETKG-----PNASTAEWSSR------SKKLTEVPSLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIKCQFCLKSFNGKNALRNFELHAIFWELYLAHPALLLPSTQADSKVEKEHGGLYPCNSIARDVVVYMESRKPVLCNNQRKVWKLQGELFHDTNPFQGRAWLQIPNG 494

The following BLAST results are available for this feature:

BLAST of NO18G00360.1 vs.

BLAST of NO18G00360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23237.1	2.900e-71	66.83	hypothetical protein Naga_100917g1 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G00360	NO18G00360	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00360.1	NO18G00360.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00360.1.cds1	NO18G00360.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00360.1.cds2	NO18G00360.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00360.1.cds3	NO18G00360.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00360.1.cds4	NO18G00360.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00360.1.cds5	NO18G00360.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00360.1.cds6	NO18G00360.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00360.1.cds7	NO18G00360.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00360.1.cds8	NO18G00360.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00360.1.cds9	NO18G00360.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00360.1.cds10	NO18G00360.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00360.1.cds11	NO18G00360.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00360.1.cds12	NO18G00360.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:149855..153149+
coding sequence from alignment at chr18:149855..153149+

mRNA sequence

>NO18G00360.1 ID=NO18G00360.1|Name=NO18G00360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp
ATGCAGTCCCTGCACTCGTCCACGTCGTCTTCCTCCCTCATTCCTCCAGG
AGGAGGAGGAGGAGGAGGAGGAGGGGGAGGATCAGAGGGAGGAGGGGGCG
GCATTTGGCTCCCGGGGAGTGAGAGCGCGAGTGAGACGCTGAGAAAGTCT
CAGGAAGTTCGGACCAAAAATCTGGAGAAGGTGCCGCCTCAGGTCGTGAA
GGCGCTAGACCACCGACTGACTCTCGTGCCCTCCTGGGACATGCGCATCA
CGAAGGAGAAGCTCGAGCAACTCGGGGGTGTGATAATGGTCGACTCCTCC
CCGGTCCTCTCCTCGGGAGAACGTTCCGAGAACGTTCCAAACTACGCTCC
CAAGAACTTCCACATCACATGCCAGTACTGTCTTAAGCCTTTCAACGGTA
AGAACGCCCTCCGCAATTTCGAGCTGCACGCCATTTTTTGGGAGCTCTAT
CTCGCCCACCCGGCCCTCCTCCTCCCCTCCACCGAGGCCGACGCCGACGT
GGAAAAAGAGCATCGGGGGGTTTACCCTTGCAACAGCATCTCCCGCGACA
TAATCATCTACATGGAGAGCAAGAAGCCCGTCCTGTGCAACAATCAAAAG
AAAGTGTGGAAGTTGCAGGGGGAGCTGCATCACGACACCGACCTCTTCCA
AGGTCGAGCGTGGCTACAAGTACCCGTCGGCATGTCCTGGGCGTCCTGGA
GGCTTGCGGAGCCTTGCTCCATGGACTCGGTCGTCTGTTGCCGCGCCAGC
AAAAATCTTGAGCAGTACGACACCCTCAGATCCCACGTCTTTACTTGGCA
TGACTCGGGCGTCTTTACCTCCTGCGCGCACTGTGGACGGGTTTACCAGA
ACACGCGCGCCTTCTTAGCCCACGGGTGCGTGAAGAAGGGCTATGATAAG
GACGAGACTCTGATCGCCTCCTGCGCCCAGCATATGGTCGGCTTGTTGGA
CGCCAGCCCTGACTTTGCTAACTTGTTTTACAACATGATGCCGCTGAGCT
CCGAGTCGAAGCAAATGGTGTTTGAGAGAGTCAGACAGAGGCTGAAGAAC
TGTAGTTAG

protein sequence of NO18G00360.1

>NO18G00360.1-protein ID=NO18G00360.1-protein|Name=NO18G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MQSLHSSTSSSSLIPPGGGGGGGGGGGSEGGGGGIWLPGSESASETLRKS
QEVRTKNLEKVPPQVVKALDHRLTLVPSWDMRITKEKLEQLGGVIMVDSS
PVLSSGERSENVPNYAPKNFHITCQYCLKPFNGKNALRNFELHAIFWELY
LAHPALLLPSTEADADVEKEHRGVYPCNSISRDIIIYMESKKPVLCNNQK
KVWKLQGELHHDTDLFQGRAWLQVPVGMSWASWRLAEPCSMDSVVCCRAS
KNLEQYDTLRSHVFTWHDSGVFTSCAHCGRVYQNTRAFLAHGCVKKGYDK
DETLIASCAQHMVGLLDASPDFANLFYNMMPLSSESKQMVFERVRQRLKN
CS*

mRNA from alignment at chr18:149855..153149+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G00360.1 ID=NO18G00360.1|Name=NO18G00360.1|organism=Nannochloropsis oceanica|type=mRNA|length=3295bp|location=Sequence derived from alignment at chr18:149855..153149+ (Nannochloropsis oceanica)
ATGCAGGTAGGAAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGATGGAT
AAGGCGGCTGCAGTATGTCTTCATGGTATGATCTTGTCCTGGAGGAATGA
GGGAGGAAGACGACGTGGACGAGTGCAGGGACTGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGATGGATAAGGCGGCTGCAGTATGTCTTCATGGTATGATCT
TGTGCAATAACGCTTCCTTGTTCTTTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCAGTCCCTGCACTCGTCCACGTCGTCTTCCTCCCTCATTCCTCCAGGA
GGAGGAGGAGGAGGAGGAGGAGGGGGAGGATCAGAGGGAGGAGGGGGCGG
CATTTGGCTCCCGGGGAGTGAGAGCGCGAGTGAGGTGAGAATGGGAGGGA
GGGCGGGAGGGAGGGAGGGAGGACGCATTGACTTCCCCCTGGCATCCATA
CCATCATGCATGCATACATTCTTACTTTCCCCACCTCACATACATCCATA
CGTAATTAACTACCATACCGCCATTCATACCTACCTACCTACCTACCTAC
TTATCACTAATCGATTAATTTCACCATGCGTACATGCCTAATCATTTGTT
CGATTGATTAATTCACCGATTTAGCAGACGCTGAGAAAGTCTCAGGAAGT
TCGGACCAAAAATCTGGAGAAGGTAGGCAAGGAGGGAGGGGGGGAGGGGG
GAAGTAAGGACACGGGAGGAGACAGGCCGCTGACGTGCGGTGGGTGTTCA
TCCCTTCCCCTACCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCCAGGTG
CCGCCTCAGGTCGTGAAGGCGCTAGACCACCGACTGACTCTCGTGCCCTC
CTGGGACATGCGCATCACGAAGGAGAAGCTCGAGCAACTCGGGGGTGTGA
TAATGGTCGACTCCTCCCCGGTACGTGCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCTCCGCGTTTCTTCCTCTTATCTCTCTCCTCTCTCTC
CTTCTTTTGTGCTTCCTTTTTCCACCCGAAGGGAAGACCCGAAGGGAAGA
CACAGCCAGCCCCAGCAGTGCGCACAATCTTACCTTACCCTTCCGTCCGT
CCCTCCCTCCCTCTCCCTCCCTCAGGTCCTCTCCTCGGGAGAACGTTCCG
AGAACGTTCCAAACTACGCTCCCAAGAACTTCCACATCACATGCCAGTAC
TGTCTTAAGCCTTTCAACGGTACCTCCCTCCCCCCTCCCTCCCTCTTTCC
CTCCCTCCCTCCCTCCTTCCTTCCCTCTCTTCCTCCCTCCCTCTCTCTCC
CTCCCTCACTCCCTCCCTCTTACCGTCCTCGATACGTTTCCTTCCCACCA
TGGTCTTACTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCCTCC
TTTCTTGTCAGGTAAGAACGCCCTCCGCAATTTCGAGCTGCACGCCATTT
TTTGGGAGCTCTATCTCGCCCACCCGGCCCTCCTCCTCCCCTCCACCGAG
GCCGACGCCGACGTACGTGCACTCCCTCCCTCCCTCCCTCCTTCCCTCCC
TTTCTTACTCTACTCCTCTCCCTCCCTCTCCTTCCCTCCCTTCCTCCCTC
ACTAGGAACACTGCGGCATCTGCCTTTGTGCCTCACCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGGTGGAAAAAGAGCATC
GGGGGGTTTACCCTTGCAACAGCATCTCCCGCGACATAATCATCTACATG
GTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGACATACACCTTTCCCTATGCTGTACGTAGTATCAAGCGAGT
TGCTCTAACCTCACCTCCACCCCGCCCTCCGTTCCGCCCTCCGTCCCGCC
CTCCGTCCCGCCCTTTGTCGCTCCCTCCCCCCAGGAGAGCAAGAAGCCCG
TCCTGTGCAACAATCAAAAGAAAGTGTGGAAGTTGCAGGGGGAGCTGCAT
CACGACACCGACCTCTTCCAAGGTCGAGCGTGGCTACAAGTACCCGTCGG
CATGTACGCAAGCCCTCCCTCCCTCCCTCCCTCTCTCCCTTTCTTTTCCC
CTCCAGCTACCCTCCCTCTGTGCACGGCCTTCCTCTGCTTATCTTTCTCC
CTCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCAGGTCCTGGGCGTCCTGGAGGCTTGCGGAGCCTTGCTCCATGGACTC
GGTCGTCTGTTGCCGCGCCAGCAAAAATCTTGAGCAGTACGACACCCTCA
GGTATGCCCTCCCTCTCTCCCTCCCTCCCTCTCTCGTTTCCTCATGCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCATCTTTCCCTCTCTCT
GCATCCCGTATTCGACGATTCTTTGATTCCCTTATCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCTTCCCTCCC
TCCCTCCCGCAGATCCCACGTCTTTACTTGGCATGACTCGGGCGTCTTTA
CCTCCTGCGCGCACTGTGGACGGGTTTACCAGAACACGCGCGCCTTCTTA
GGTGAGGAGGAGGGGAGGGAGAGGAGGAGGGATGCAGGGAGGGCGAGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGCGGAGCCACTTGA
GTCGCTTACTCACCTACCTTCCTCCAATTCCTCTTCCCTCCCTCGTTCCC
TCGCTCCCTCCCTCCCTCCATCCCTCCCTCCAGCCCACGGGTGCGTGAAG
AAGGGCTATGATAAGGACGAGACTCTGATCGCCTCCTGCGCCCAGCATAT
GGTCGGCTTGTTGGACGCCAGGTGAGAGAGAGGGAGGGAGGGCGGGAGGG
AGGGATGCTTTAATTCAGTGTGTGGCATGCGTATAAAGGAAGGTATTAAC
AGCCATTCACCCTTCTCCCTTACCTCCCTTACCTCCCTTCCTCCCTCCCT
CCTTTTTCCCTGAGTTCGAAGAATCCAAGAAAGAAAGTCACTGACACCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCCAGCCCTGACT
TTGCTAACTTGTTTTACAACATGATGCCGCTGAGCTCCGAGTCGAAGCAA
ATGGTGTTTGAGAGAGTCAGACAGAGGCTGAAGAACTGTAGTTAG

Coding sequence (CDS) from alignment at chr18:149855..153149+

>NO18G00360.1 ID=NO18G00360.1|Name=NO18G00360.1|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr18:149855..153149+ (Nannochloropsis oceanica)
ATGCAGTCCCTGCACTCGTCCACGTCGTCTTCCTCCCTCATTCCTCCAGG
AGGAGGAGGAGGAGGAGGAGGAGGGGGAGGATCAGAGGGAGGAGGGGGCG
GCATTTGGCTCCCGGGGAGTGAGAGCGCGAGTGAGACGCTGAGAAAGTCT
CAGGAAGTTCGGACCAAAAATCTGGAGAAGGTGCCGCCTCAGGTCGTGAA
GGCGCTAGACCACCGACTGACTCTCGTGCCCTCCTGGGACATGCGCATCA
CGAAGGAGAAGCTCGAGCAACTCGGGGGTGTGATAATGGTCGACTCCTCC
CCGGTCCTCTCCTCGGGAGAACGTTCCGAGAACGTTCCAAACTACGCTCC
CAAGAACTTCCACATCACATGCCAGTACTGTCTTAAGCCTTTCAACGGTA
AGAACGCCCTCCGCAATTTCGAGCTGCACGCCATTTTTTGGGAGCTCTAT
CTCGCCCACCCGGCCCTCCTCCTCCCCTCCACCGAGGCCGACGCCGACGT
GGAAAAAGAGCATCGGGGGGTTTACCCTTGCAACAGCATCTCCCGCGACA
TAATCATCTACATGGAGAGCAAGAAGCCCGTCCTGTGCAACAATCAAAAG
AAAGTGTGGAAGTTGCAGGGGGAGCTGCATCACGACACCGACCTCTTCCA
AGGTCGAGCGTGGCTACAAGTACCCGTCGGCATGTCCTGGGCGTCCTGGA
GGCTTGCGGAGCCTTGCTCCATGGACTCGGTCGTCTGTTGCCGCGCCAGC
AAAAATCTTGAGCAGTACGACACCCTCAGATCCCACGTCTTTACTTGGCA
TGACTCGGGCGTCTTTACCTCCTGCGCGCACTGTGGACGGGTTTACCAGA
ACACGCGCGCCTTCTTAGCCCACGGGTGCGTGAAGAAGGGCTATGATAAG
GACGAGACTCTGATCGCCTCCTGCGCCCAGCATATGGTCGGCTTGTTGGA
CGCCAGCCCTGACTTTGCTAACTTGTTTTACAACATGATGCCGCTGAGCT
CCGAGTCGAAGCAAATGGTGTTTGAGAGAGTCAGACAGAGGCTGAAGAAC
TGTAGTTAG

Synonyms

Publications