NO18G00310, NO18G00310 (gene) Nannochloropsis oceanica

Overview
NameNO18G00310
Unique NameNO18G00310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1039
Alignment locationchr18:130918..131956 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:130918..131956 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO18G00310 vs. NCBI_GenBank
Match: EWM23230.1 (hypothetical protein Naga_100384g3 [Nannochloropsis gaditana])

HSP 1 Score: 263.8 bits (673), Expect = 6.600e-67
Identity = 143/253 (56.52%), Postives = 189/253 (74.70%), Query Frame = 0 
Query:   58 VVPTTATINKSIVTRARGGGPRIFRRQDYFEETEIDRGRCLARMHALVAVQFFLLASFLCISFPESLPRALAPYLLEGGDIVLAQSVGAGSLLSFLLVLLLGKSHTARATFPLNAVLLLGLTSIKSLLVAALTYRYFPPSS-STYAAFPFLFACQAAITQIGLAFLAAYAPSQAENFLPYLLATVLTLLPARPISLLLCLPMPSVMMAAALSFVVSVLVLFVNQSNVRGKAHRGGWEALADMYAKVYGGVGGG 310
            V P+T T   +++ R RGGGP IFRR+DYFEET +DRGRCLARM+ L  + + ++A  L +  P+ +P  LAP+LL+ GD VLA+S G G++   LL +++ K+ TAR +FPLNA LLL  T +K+LL+A L+YR+FPPSS S YA+FP LFA Q  +TQ   A  AAY P++AE+  PYLL TVLTL+PARP+SLLL LP+PSVM+AAALSF+ SV++L  +QS+V+G AHR GWEA+A+M   V GGVG G
Sbjct:  111 VFPST-TKGTTLMHRVRGGGPGIFRREDYFEETAVDRGRCLARMYTLTTLLYAVVAGVLSVPLPKYMPAVLAPFLLDSGDPVLARSFGVGAVAVLLLSVVVVKNRTARVSFPLNATLLLSATGLKALLLAVLSYRFFPPSSTSPYASFPRLFAFQTTVTQFAQALFAAYLPARAESLFPYLLTTVLTLVPARPLSLLLSLPLPSVMVAAALSFLASVIILLASQSSVQGGAHRNGWEAVAEMVTTVLGGVGQG 362
The following BLAST results are available for this feature:
BLAST of NO18G00310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23230.16.600e-6756.52hypothetical protein Naga_100384g3 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00310.1NO18G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673898gene_9806Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100384g3gene7220Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00310.1NO18G00310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00310 ID=NO18G00310|Name=NO18G00310|organism=Nannochloropsis oceanica|type=gene|length=1039bp
ATGAAGACCTCTGGGCTCCTTCGCCTCATCGTCGTGTCAAGCCTGGCCAC
TGGAGCTTCCGCCGCGGCCATGATGCCGCTCTCCGCCTTCTCTGGGCGCT
GTAGCAGGAGCAGCAGGAGCAGCATCAGCTGTTTGCTTCTCTCTCGCGGC
GGAGCTTCATCGTCCTCTGGCGTCGTTCCCACCACTGCCACTATTAACAA
GAGCATCGTTACGCGTGCTCGTGGAGGTGGGCCTCGCATATTCAGACGAC
AAGACTATTTCGAAGAGgtgagatctcttctgctgcttttgaaggagagc
gtcgtcaatattcatcaactcgcaatgccttcctccacatcttcctccct
tttctttctctcctcagACAGAGATCGACCGCGGGCGCTGCCTGGCTCGT
ATGCACGCTCTTGTCGCAGTTCAGTTTTTCCTCCTCGCCAGTTTTCTTTG
CATCTCCTTCCCTGAAAGTCTTCCTCGCGCCCTCGCACCCTACCTGCTCG
AAGGCGGGGACATTGTATTGGCCCAGTCAGTAGGCGCTGGTAGCCTCTTA
TCGTTTTTACTCGTGCTCCTGCTCGGGAAAAGTCATACGGCCCGCGCAAC
TTTTCCGTTGAATGCTGTCCTTCTACTTGGTTTGACGAGCATCAAGTCCC
TCCTTGTCGCTGCCCTGACCTACCGCTATTTTCCCCCTTCCTCGTCCACC
TACGCCGCTTTCCCTTTTCTCTTTGCGTGCCAGGCCGCCATCACTCAGAT
TGGTCTCGCCTTCCTGGCCGCCTACGCTCCTTCGCAGGCCGAAAACTTTC
TGCCTTACCTCCTTGCCACAGTCCTAACCCTTCTGCCGGCCCGGCCTATC
TCCCTCCTCCTGTGTCTCCCCATGCCCAGTGTGATGATGGCGGCGGCCTT
GTCGTTCGTAGTCAGCGTCTTGGTGCTGTTTGTGAATCAAAGCAATGTGC
GCGGTAAGGCACATAGGGGGGGGTGGGAAGCCCTTGCGGACATGTATGCG
AAAGTTTACGGAGGAGTAGGGGGAGGGAGGAGGGCGTGA
back to top

protein sequence of NO18G00310.1

>NO18G00310.1-protein ID=NO18G00310.1-protein|Name=NO18G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MKTSGLLRLIVVSSLATGASAAAMMPLSAFSGRCSRSSRSSISCLLLSRG
GASSSSGVVPTTATINKSIVTRARGGGPRIFRRQDYFEETEIDRGRCLAR
MHALVAVQFFLLASFLCISFPESLPRALAPYLLEGGDIVLAQSVGAGSLL
SFLLVLLLGKSHTARATFPLNAVLLLGLTSIKSLLVAALTYRYFPPSSST
YAAFPFLFACQAAITQIGLAFLAAYAPSQAENFLPYLLATVLTLLPARPI
SLLLCLPMPSVMMAAALSFVVSVLVLFVNQSNVRGKAHRGGWEALADMYA
KVYGGVGGGRRA*
back to top
Synonyms
Publications