NO18G00310.1, NO18G00310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00310.1
Unique NameNO18G00310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length939
Alignment locationchr18:130918..131956 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:130918..131956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00310.1 vs.
Match: EWM23230.1 (hypothetical protein Naga_100384g3 [Nannochloropsis gaditana])

HSP 1 Score: 263.8 bits (673), Expect = 6.600e-67
Identity = 143/253 (56.52%), Postives = 189/253 (74.70%), Query Frame = 0 
Query:   58 VVPTTATINKSIVTRARGGGPRIFRRQDYFEETEIDRGRCLARMHALVAVQFFLLASFLCISFPESLPRALAPYLLEGGDIVLAQSVGAGSLLSFLLVLLLGKSHTARATFPLNAVLLLGLTSIKSLLVAALTYRYFPPSS-STYAAFPFLFACQAAITQIGLAFLAAYAPSQAENFLPYLLATVLTLLPARPISLLLCLPMPSVMMAAALSFVVSVLVLFVNQSNVRGKAHRGGWEALADMYAKVYGGVGGG 310
            V P+T T   +++ R RGGGP IFRR+DYFEET +DRGRCLARM+ L  + + ++A  L +  P+ +P  LAP+LL+ GD VLA+S G G++   LL +++ K+ TAR +FPLNA LLL  T +K+LL+A L+YR+FPPSS S YA+FP LFA Q  +TQ   A  AAY P++AE+  PYLL TVLTL+PARP+SLLL LP+PSVM+AAALSF+ SV++L  +QS+V+G AHR GWEA+A+M   V GGVG G
Sbjct:  111 VFPST-TKGTTLMHRVRGGGPGIFRREDYFEETAVDRGRCLARMYTLTTLLYAVVAGVLSVPLPKYMPAVLAPFLLDSGDPVLARSFGVGAVAVLLLSVVVVKNRTARVSFPLNATLLLSATGLKALLLAVLSYRFFPPSSTSPYASFPRLFAFQTTVTQFAQALFAAYLPARAESLFPYLLTTVLTLVPARPLSLLLSLPLPSVMVAAALSFLASVIILLASQSSVQGGAHRNGWEAVAEMVTTVLGGVGQG 362
The following BLAST results are available for this feature:
BLAST of NO18G00310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23230.16.600e-6756.52hypothetical protein Naga_100384g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00310NO18G00310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00310.1NO18G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00310.1.cds1NO18G00310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00310.1.cds2NO18G00310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00310.1 ID=NO18G00310.1|Name=NO18G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=939bp
ATGAAGACCTCTGGGCTCCTTCGCCTCATCGTCGTGTCAAGCCTGGCCAC
TGGAGCTTCCGCCGCGGCCATGATGCCGCTCTCCGCCTTCTCTGGGCGCT
GTAGCAGGAGCAGCAGGAGCAGCATCAGCTGTTTGCTTCTCTCTCGCGGC
GGAGCTTCATCGTCCTCTGGCGTCGTTCCCACCACTGCCACTATTAACAA
GAGCATCGTTACGCGTGCTCGTGGAGGTGGGCCTCGCATATTCAGACGAC
AAGACTATTTCGAAGAGACAGAGATCGACCGCGGGCGCTGCCTGGCTCGT
ATGCACGCTCTTGTCGCAGTTCAGTTTTTCCTCCTCGCCAGTTTTCTTTG
CATCTCCTTCCCTGAAAGTCTTCCTCGCGCCCTCGCACCCTACCTGCTCG
AAGGCGGGGACATTGTATTGGCCCAGTCAGTAGGCGCTGGTAGCCTCTTA
TCGTTTTTACTCGTGCTCCTGCTCGGGAAAAGTCATACGGCCCGCGCAAC
TTTTCCGTTGAATGCTGTCCTTCTACTTGGTTTGACGAGCATCAAGTCCC
TCCTTGTCGCTGCCCTGACCTACCGCTATTTTCCCCCTTCCTCGTCCACC
TACGCCGCTTTCCCTTTTCTCTTTGCGTGCCAGGCCGCCATCACTCAGAT
TGGTCTCGCCTTCCTGGCCGCCTACGCTCCTTCGCAGGCCGAAAACTTTC
TGCCTTACCTCCTTGCCACAGTCCTAACCCTTCTGCCGGCCCGGCCTATC
TCCCTCCTCCTGTGTCTCCCCATGCCCAGTGTGATGATGGCGGCGGCCTT
GTCGTTCGTAGTCAGCGTCTTGGTGCTGTTTGTGAATCAAAGCAATGTGC
GCGGTAAGGCACATAGGGGGGGGTGGGAAGCCCTTGCGGACATGTATGCG
AAAGTTTACGGAGGAGTAGGGGGAGGGAGGAGGGCGTGA
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protein sequence of NO18G00310.1

>NO18G00310.1-protein ID=NO18G00310.1-protein|Name=NO18G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MKTSGLLRLIVVSSLATGASAAAMMPLSAFSGRCSRSSRSSISCLLLSRG
GASSSSGVVPTTATINKSIVTRARGGGPRIFRRQDYFEETEIDRGRCLAR
MHALVAVQFFLLASFLCISFPESLPRALAPYLLEGGDIVLAQSVGAGSLL
SFLLVLLLGKSHTARATFPLNAVLLLGLTSIKSLLVAALTYRYFPPSSST
YAAFPFLFACQAAITQIGLAFLAAYAPSQAENFLPYLLATVLTLLPARPI
SLLLCLPMPSVMMAAALSFVVSVLVLFVNQSNVRGKAHRGGWEALADMYA
KVYGGVGGGRRA*
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mRNA from alignment at chr18:130918..131956-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00310.1 ID=NO18G00310.1|Name=NO18G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1039bp|location=Sequence derived from alignment at chr18:130918..131956- (Nannochloropsis oceanica)
ATGAAGACCTCTGGGCTCCTTCGCCTCATCGTCGTGTCAAGCCTGGCCAC
TGGAGCTTCCGCCGCGGCCATGATGCCGCTCTCCGCCTTCTCTGGGCGCT
GTAGCAGGAGCAGCAGGAGCAGCATCAGCTGTTTGCTTCTCTCTCGCGGC
GGAGCTTCATCGTCCTCTGGCGTCGTTCCCACCACTGCCACTATTAACAA
GAGCATCGTTACGCGTGCTCGTGGAGGTGGGCCTCGCATATTCAGACGAC
AAGACTATTTCGAAGAGGTGAGATCTCTTCTGCTGCTTTTGAAGGAGAGC
GTCGTCAATATTCATCAACTCGCAATGCCTTCCTCCACATCTTCCTCCCT
TTTCTTTCTCTCCTCAGACAGAGATCGACCGCGGGCGCTGCCTGGCTCGT
ATGCACGCTCTTGTCGCAGTTCAGTTTTTCCTCCTCGCCAGTTTTCTTTG
CATCTCCTTCCCTGAAAGTCTTCCTCGCGCCCTCGCACCCTACCTGCTCG
AAGGCGGGGACATTGTATTGGCCCAGTCAGTAGGCGCTGGTAGCCTCTTA
TCGTTTTTACTCGTGCTCCTGCTCGGGAAAAGTCATACGGCCCGCGCAAC
TTTTCCGTTGAATGCTGTCCTTCTACTTGGTTTGACGAGCATCAAGTCCC
TCCTTGTCGCTGCCCTGACCTACCGCTATTTTCCCCCTTCCTCGTCCACC
TACGCCGCTTTCCCTTTTCTCTTTGCGTGCCAGGCCGCCATCACTCAGAT
TGGTCTCGCCTTCCTGGCCGCCTACGCTCCTTCGCAGGCCGAAAACTTTC
TGCCTTACCTCCTTGCCACAGTCCTAACCCTTCTGCCGGCCCGGCCTATC
TCCCTCCTCCTGTGTCTCCCCATGCCCAGTGTGATGATGGCGGCGGCCTT
GTCGTTCGTAGTCAGCGTCTTGGTGCTGTTTGTGAATCAAAGCAATGTGC
GCGGTAAGGCACATAGGGGGGGGTGGGAAGCCCTTGCGGACATGTATGCG
AAAGTTTACGGAGGAGTAGGGGGAGGGAGGAGGGCGTGA
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Coding sequence (CDS) from alignment at chr18:130918..131956-

>NO18G00310.1 ID=NO18G00310.1|Name=NO18G00310.1|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at chr18:130918..131956- (Nannochloropsis oceanica)
ATGAAGACCTCTGGGCTCCTTCGCCTCATCGTCGTGTCAAGCCTGGCCAC
TGGAGCTTCCGCCGCGGCCATGATGCCGCTCTCCGCCTTCTCTGGGCGCT
GTAGCAGGAGCAGCAGGAGCAGCATCAGCTGTTTGCTTCTCTCTCGCGGC
GGAGCTTCATCGTCCTCTGGCGTCGTTCCCACCACTGCCACTATTAACAA
GAGCATCGTTACGCGTGCTCGTGGAGGTGGGCCTCGCATATTCAGACGAC
AAGACTATTTCGAAGAGACAGAGATCGACCGCGGGCGCTGCCTGGCTCGT
ATGCACGCTCTTGTCGCAGTTCAGTTTTTCCTCCTCGCCAGTTTTCTTTG
CATCTCCTTCCCTGAAAGTCTTCCTCGCGCCCTCGCACCCTACCTGCTCG
AAGGCGGGGACATTGTATTGGCCCAGTCAGTAGGCGCTGGTAGCCTCTTA
TCGTTTTTACTCGTGCTCCTGCTCGGGAAAAGTCATACGGCCCGCGCAAC
TTTTCCGTTGAATGCTGTCCTTCTACTTGGTTTGACGAGCATCAAGTCCC
TCCTTGTCGCTGCCCTGACCTACCGCTATTTTCCCCCTTCCTCGTCCACC
TACGCCGCTTTCCCTTTTCTCTTTGCGTGCCAGGCCGCCATCACTCAGAT
TGGTCTCGCCTTCCTGGCCGCCTACGCTCCTTCGCAGGCCGAAAACTTTC
TGCCTTACCTCCTTGCCACAGTCCTAACCCTTCTGCCGGCCCGGCCTATC
TCCCTCCTCCTGTGTCTCCCCATGCCCAGTGTGATGATGGCGGCGGCCTT
GTCGTTCGTAGTCAGCGTCTTGGTGCTGTTTGTGAATCAAAGCAATGTGC
GCGGTAAGGCACATAGGGGGGGGTGGGAAGCCCTTGCGGACATGTATGCG
AAAGTTTACGGAGGAGTAGGGGGAGGGAGGAGGGCGTGA
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Synonyms
Publications