NO18G00220, NO18G00220 (gene) Nannochloropsis oceanica

Overview
NameNO18G00220
Unique NameNO18G00220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length643
Alignment locationchr18:80808..81450 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:80808..81450 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO18G00220 vs. NCBI_GenBank
Match: EWC48352.1 (hypothetical protein DRE_02121 [Drechslerella stenobrocha 248])

HSP 1 Score: 76.3 bits (186), Expect = 8.100e-11
Identity = 46/129 (35.66%), Postives = 68/129 (52.71%), Query Frame = 0
Query:    5 LPVLWRVQVLGGDAVCLLMRRLFPHE--IAAGKVVVTHIDKD--NVEQSRISEILTDPTFYNHLLGDTWLF-FQLDSLICSKQRILLQTFLNRDYGWWGAPWNFWGRVPRICGNGGFSLRKKQFVNTIL 129
            +P  W    LG +     + R  P    +  GK+ +  I +D     Q  +S++ T+P FY   L   WLF FQLDS+IC+  R+ L  ++ + Y W GAPWN  G +    GNGGFSLR+  ++  +L
Sbjct:   97 VPPDWPFLFLGSNKSITHLTRSAPIRTYMKIGKLDMRLIPEDMPMTNQEEVSKVFTNPEFYKLFLPAEWLFVFQLDSMICANSRVSLDDWVEKGYTWVGAPWNAKGGLGG--GNGGFSLRRMSYLIRLL 223          
BLAST of NO18G00220 vs. NCBI_GenBank
Match: EPS40722.1 (hypothetical protein H072_5411 [Dactylellina haptotyla CBS 200.50])

HSP 1 Score: 70.9 bits (172), Expect = 3.400e-9
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 0
Query:   48 QSRISEILTDPTFYNHLLGDTWLF-FQLDSLICSKQRILLQTFLNRDYGWWGAPWNFWGRVPRICGNGGFSLRKKQFVNTILS 130
            Q  +S+ +T+  FY+ LL   WLF FQ DS+IC+   + L  ++ +DY W GA    WG   +  GNGGFSLR+   +  +LS
Sbjct:  130 QEELSKTMTNAWFYSQLLPAEWLFIFQTDSIICANSNVTLNDWIEKDYSWVGAS---WGENTKYGGNGGFSLRRISHLLRVLS 209          
BLAST of NO18G00220 vs. NCBI_GenBank
Match: PTB75768.1 (hypothetical protein M440DRAFT_1422876 [Trichoderma longibrachiatum ATCC 18648])

HSP 1 Score: 68.6 bits (166), Expect = 1.700e-8
Identity = 48/131 (36.64%), Postives = 67/131 (51.15%), Query Frame = 0
Query:    5 LPVLWRVQVLGGDAVCLLMRR--LFPHEIAAGKVVVTHIDKDNVE---QSRISEILTDPTFYNHLL--GDTWLFFQLDSLICSKQRILLQTFLNRDYGWWGAPWNFWGRVPRICGNGGFSLRKKQFVNTIL 129
            +P  W  + +G       + R     H +AAGK+ +THI  DN+    Q  IS+ LT    Y  +L   +  L FQ DS++C+  R+ L  FL  +Y W GAPWN  GR     GNGG SLR+   +  +L
Sbjct:   98 VPPDWHFRFMGSPQSVASINRSVAIRHHVAAGKLQLTHI-PDNMSTNGQEEISQFLTTLWLYEAVLRPAEWLLVFQTDSMLCANSRLNLNDFL--EYDWVGAPWNPEGRWG---GNGGLSLRRVSRIIDVL 222          
BLAST of NO18G00220 vs. NCBI_GenBank
Match: KFY78837.1 (hypothetical protein V499_02082 [Pseudogymnoascus sp. VKM F-103])

HSP 1 Score: 67.8 bits (164), Expect = 2.900e-8
Identity = 47/126 (37.30%), Postives = 67/126 (53.17%), Query Frame = 0
Query:    2 IMNLPVLWRVQVLGGDAVCLLMRRLF--PHEIAAGKVVVTHIDK----DNVEQSRISEILTDPTFYNHLLGDT-W-LFFQLDSLICSKQRILLQTFLNRDYGWWGAPWNFWGRVPRICGNGGFSLR 120
            I  LP  W V+++G      ++ + +   H IA+ K+ +  +      D+ E   IS+ LT+ TFY+  L    W LFFQ DS+ICS     +  ++ + Y W GAPWN  G VP   GNGG SLR
Sbjct:  122 IATLPPAWVVKLVGSQEAFAVVHKSYSLKHHIASKKLQLQELPSYYPVDSSES--ISQTLTNVTFYSEFLAPAEWALFFQTDSIICSASEQNIDDWVAKGYDWTGAPWN--GDVPG--GNGGLSLR 241          
BLAST of NO18G00220 vs. NCBI_GenBank
Match: XP_007296151.1 (hypothetical protein MBM_08262 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1] >EKD13544.1 hypothetical protein MBM_08262 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1])

HSP 1 Score: 67.4 bits (163), Expect = 3.800e-8
Identity = 48/130 (36.92%), Postives = 71/130 (54.62%), Query Frame = 0
Query:    5 LPVLWRVQVLGG-DAVCLL-MRRLFPHEIAAGKVVVTHIDKDNV--EQSRISEILTDPTFYNHLL--GDTWLFFQLDSLICSKQRILLQTFLNRDYGWWGAPWNFWGRVPRICGNGGFSLRKKQFVNTIL 129
            +P  WR +V+G  +++ LL   R   +++A+GK+ +T+I  +     Q  IS  LT    Y  +L   +  L FQ DS++C+  R  L ++L  DY W GAPWN  G   R  GNGG SLRK   +  +L
Sbjct:  106 VPPDWRFRVMGSLESIELLNSSRAIRNQVASGKLDLTYIPANMTTGSQEEISRFLTTLWLYETVLQPAEWLLVFQTDSMLCANSRQSLNSWL--DYDWVGAPWNPNG---RFGGNGGLSLRKVSAIIDVL 230          
BLAST of NO18G00220 vs. NCBI_GenBank
Match: XP_024749661.1 (hypothetical protein BBK36DRAFT_1168950 [Trichoderma citrinoviride] >PTB66341.1 hypothetical protein BBK36DRAFT_1168950 [Trichoderma citrinoviride])

HSP 1 Score: 66.2 bits (160), Expect = 8.400e-8
Identity = 45/130 (34.62%), Postives = 66/130 (50.77%), Query Frame = 0
Query:    5 LPVLWRVQVLGGDAVCLLMRR--LFPHEIAAGKVVVTHIDKD--NVEQSRISEILTDPTFYNHLL--GDTWLFFQLDSLICSKQRILLQTFLNRDYGWWGAPWNFWGRVPRICGNGGFSLRKKQFVNTIL 129
            +P  WR + +G       + R     H +A GK+ +T+I ++     Q  IS+ LT    Y  +L   +  L FQ DS++C+  R+ L  FL  +Y W GAPWN    V R  GNGG SLR+   +  +L
Sbjct:   72 VPPDWRFRFMGSPQSVASINRSVAIRHHVAGGKLDLTYIPENLSTNGQEEISQFLTTLWLYEVVLRPAEWLLVFQTDSMLCANSRLNLNDFL--EYDWVGAPWN---PVGRWGGNGGLSLRRVSRIIDVL 196          
BLAST of NO18G00220 vs. NCBI_GenBank
Match: XP_024549221.1 (hypothetical protein BCIN_06g03020 [Botrytis cinerea B05.10] >CCD48049.1 hypothetical protein BofuT4_P110620.1 [Botrytis cinerea T4] >ATZ50823.1 hypothetical protein BCIN_06g03020 [Botrytis cinerea B05.10])

HSP 1 Score: 65.5 bits (158), Expect = 1.400e-7
Identity = 44/122 (36.07%), Postives = 63/122 (51.64%), Query Frame = 0
Query:    5 LPVLWRVQVLG---GDAVCLLMRRLFPHEIAAGKVVVTHIDKDNV--EQSRISEILTDPTFYNHLLGDT-W-LFFQLDSLICSKQRILLQTFLNRDYGWWGAPWNFWGRVPRICGNGGFSLR 120
            LP  W  + +G    +A+      L  H +  GK+V+T + +     +Q  IS  LTD TFY   L    W L FQ DS+IC+     ++ ++++DY W GAPWN   +     GNGG SLR
Sbjct:  131 LPAPWVFRFVGTPEANALISSSSSLSGH-VKTGKLVITELPEKYAIKDQETISMTLTDLTFYRDFLAPAEWVLMFQSDSMICASSEYNIEDWISKDYSWVGAPWNMAVK----GGNGGLSLR 247          
BLAST of NO18G00220 vs. NCBI_GenBank
Match: EMR88557.1 (hypothetical protein BcDW1_2895 [Botrytis cinerea BcDW1])

HSP 1 Score: 65.5 bits (158), Expect = 1.400e-7
Identity = 44/122 (36.07%), Postives = 63/122 (51.64%), Query Frame = 0
Query:    5 LPVLWRVQVLG---GDAVCLLMRRLFPHEIAAGKVVVTHIDKDNV--EQSRISEILTDPTFYNHLLGDT-W-LFFQLDSLICSKQRILLQTFLNRDYGWWGAPWNFWGRVPRICGNGGFSLR 120
            LP  W  + +G    +A+      L  H +  GK+V+T + +     +Q  IS  LTD TFY   L    W L FQ DS+IC+     ++ ++++DY W GAPWN   +     GNGG SLR
Sbjct:  101 LPAPWVFRFVGTPEANALISSSSSLSGH-VKTGKLVITELPEKYAIKDQETISMTLTDLTFYRDFLAPAEWVLMFQSDSMICASSEYNIEDWISKDYSWVGAPWNMAVK----GGNGGLSLR 217          
BLAST of NO18G00220 vs. NCBI_GenBank
Match: XP_013949787.1 (hypothetical protein TRIVIDRAFT_164366 [Trichoderma virens Gv29-8] >EHK15589.1 hypothetical protein TRIVIDRAFT_164366 [Trichoderma virens Gv29-8])

HSP 1 Score: 65.1 bits (157), Expect = 1.900e-7
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 0
Query:    5 LPVLWRVQVLGGDAVCLLMRR--LFPHEIAAGKVVVTHIDKD--NVEQSRISEILTDPTFYNHLL--GDTWLFFQLDSLICSKQRILLQTFLNRDYGWWGAPWN---FWGRVPRICGNGGFSLRKKQFVNTIL 129
            +P  WR + +G       + R     H++AAGK+ +T I ++     Q  IS+ LT    Y  +L   +  L FQ DS++C+  R+ L  FL  +Y W GAPWN    WG      GNGG SLR+   +  IL
Sbjct:    8 VPPDWRFRFMGSPLSVASINRSVAIRHQVAAGKLDLTFIPENMSTGGQEEISQFLTTLWLYEVVLQPAEWLLVFQTDSMLCANSRLNLNDFL--EYDWVGAPWNPDGQWG------GNGGLSLRRVSRIIDIL 132          
BLAST of NO18G00220 vs. NCBI_GenBank
Match: KFZ02000.1 (hypothetical protein V500_00510 [Pseudogymnoascus sp. VKM F-4518 (FW-2643)])

HSP 1 Score: 65.1 bits (157), Expect = 1.900e-7
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = 0
Query:    2 IMNLPVLWRVQVLGGDAVCLLMRR--LFPHEIAAGKVVVTHIDK----DNVEQSRISEILTDPTFYNHLLGDT-W-LFFQLDSLICSKQRILLQTFLNRDYGWWGAPWNFWGRVPRICGNGGFSLR 120
            +  LP  W V+++G      ++R+       IA+ K+ +  +      D+ E   IS+ LT+ TFY+  L    W LFFQ DS+ICS     +  ++ + Y W GAPWN  G VP   GNGG SLR
Sbjct:  121 VATLPPAWVVKLVGSQEAFAVVRKSHSLKQHIASKKLQLQELPSYYPVDSSES--ISQTLTNVTFYSEFLAPAEWALFFQTDSIICSASEQNIDDWVAKGYDWTGAPWN--GDVPG--GNGGLSLR 240          
The following BLAST results are available for this feature:
BLAST of NO18G00220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWC48352.18.100e-1135.66hypothetical protein DRE_02121 [Drechslerella sten... [more]
EPS40722.13.400e-940.96hypothetical protein H072_5411 [Dactylellina hapto... [more]
PTB75768.11.700e-836.64hypothetical protein M440DRAFT_1422876 [Trichoderm... [more]
KFY78837.12.900e-837.30hypothetical protein V499_02082 [Pseudogymnoascus ... [more]
XP_007296151.13.800e-836.92hypothetical protein MBM_08262 [Marssonina brunnea... [more]
XP_024749661.18.400e-834.62hypothetical protein BBK36DRAFT_1168950 [Trichoder... [more]
XP_024549221.11.400e-736.07hypothetical protein BCIN_06g03020 [Botrytis ciner... [more]
EMR88557.11.400e-736.07hypothetical protein BcDW1_2895 [Botrytis cinerea ... [more]
XP_013949787.11.900e-735.34hypothetical protein TRIVIDRAFT_164366 [Trichoderm... [more]
KFZ02000.11.900e-736.51hypothetical protein V500_00510 [Pseudogymnoascus ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00220.1NO18G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605485gene_9790Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00220.1NO18G00220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00220 ID=NO18G00220|Name=NO18G00220|organism=Nannochloropsis oceanica|type=gene|length=643bp
ATGATAATGAATTTACCCGTACTCTGGCGAGTACAAGTACTCGGTGGGGA
CGCTGTGTGCCTCTTGATGCGCCGTCTCTTTCCACATGAAATAGCGGCAG
GTAAAGTTGTGGTGACTCATATCGACAAGGACAATGTAGAGCAGgtacga
cctattattctgtaggctttattttttagggtccgattgtactttgacat
tcctcactttcccccttcttggctgcgtagAGCAGGATTAGCGAGATATT
GACAGATCCCACCTTTTACAATCATCTGCTGGGAGACACTTGGCTTTTCT
TCCAGgtaacagtcaaatatcgattgctgatgatcgcaaaattcgctcac
taactgaattttccccgttcccccaagTTGGACTCTCTCATTTGCTCCAA
GCAGCGGATATTGCTTCAAACATTTCTCAACAGGGATTACGGCTGGTGGG
GAGCACCATGGAAgtaagatgcagctatgatgtagcttgaaggcaatcag
ctatgacacttgtttcaaaatgctaaccactctaccccttttgcacatat
gacagCTTCTGGGGCAGAGTTCCTCGAATATGTGGCAATGGAGGCTTCTC
GCTCCGTAAAAAACAGTTTGTTAATACCATTCTGTCACGGTAA
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protein sequence of NO18G00220.1

>NO18G00220.1-protein ID=NO18G00220.1-protein|Name=NO18G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MIMNLPVLWRVQVLGGDAVCLLMRRLFPHEIAAGKVVVTHIDKDNVEQSR
ISEILTDPTFYNHLLGDTWLFFQLDSLICSKQRILLQTFLNRDYGWWGAP
WNFWGRVPRICGNGGFSLRKKQFVNTILSR*
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Synonyms
Publications