NO18G00220.1, NO18G00220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00220.1
Unique NameNO18G00220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length393
Alignment locationchr18:80808..81450 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:80808..81450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO18G00220.1 vs.
Match: EWC48352.1 (hypothetical protein DRE_02121 [Drechslerella stenobrocha 248])

HSP 1 Score: 76.3 bits (186), Expect = 8.100e-11
Identity = 46/129 (35.66%), Postives = 68/129 (52.71%), Query Frame = 0 
Query:    5 LPVLWRVQVLGGDAVCLLMRRLFPHE--IAAGKVVVTHIDKDN--VEQSRISEILTDPTFYNHLLGDTWLF-FQLDSLICSKQRILLQTFLNRDYGWWGAPWNFWGRVPRICGNGGFSLRKKQFVNTIL 129
            +P  W    LG +     + R  P    +  GK+ +  I +D     Q  +S++ T+P FY   L   WLF FQLDS+IC+  R+ L  ++ + Y W GAPWN  G +    GNGGFSLR+  ++  +L
Sbjct:   97 VPPDWPFLFLGSNKSITHLTRSAPIRTYMKIGKLDMRLIPEDMPMTNQEEVSKVFTNPEFYKLFLPAEWLFVFQLDSMICANSRVSLDDWVEKGYTWVGAPWNAKGGLGG--GNGGFSLRRMSYLIRLL 223
The following BLAST results are available for this feature:
BLAST of NO18G00220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWC48352.18.100e-1135.66hypothetical protein DRE_02121 [Drechslerella sten... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00220NO18G00220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00220.1NO18G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00220.1.cds1NO18G00220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00220.1.cds2NO18G00220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00220.1.cds3NO18G00220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00220.1.cds4NO18G00220.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00220.1 ID=NO18G00220.1|Name=NO18G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=393bp
ATGATAATGAATTTACCCGTACTCTGGCGAGTACAAGTACTCGGTGGGGA
CGCTGTGTGCCTCTTGATGCGCCGTCTCTTTCCACATGAAATAGCGGCAG
GTAAAGTTGTGGTGACTCATATCGACAAGGACAATGTAGAGCAGAGCAGG
ATTAGCGAGATATTGACAGATCCCACCTTTTACAATCATCTGCTGGGAGA
CACTTGGCTTTTCTTCCAGTTGGACTCTCTCATTTGCTCCAAGCAGCGGA
TATTGCTTCAAACATTTCTCAACAGGGATTACGGCTGGTGGGGAGCACCA
TGGAACTTCTGGGGCAGAGTTCCTCGAATATGTGGCAATGGAGGCTTCTC
GCTCCGTAAAAAACAGTTTGTTAATACCATTCTGTCACGGTAA
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protein sequence of NO18G00220.1

>NO18G00220.1-protein ID=NO18G00220.1-protein|Name=NO18G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MIMNLPVLWRVQVLGGDAVCLLMRRLFPHEIAAGKVVVTHIDKDNVEQSR
ISEILTDPTFYNHLLGDTWLFFQLDSLICSKQRILLQTFLNRDYGWWGAP
WNFWGRVPRICGNGGFSLRKKQFVNTILSR*
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mRNA from alignment at chr18:80808..81450-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00220.1 ID=NO18G00220.1|Name=NO18G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=643bp|location=Sequence derived from alignment at chr18:80808..81450- (Nannochloropsis oceanica)
ATGATAATGAATTTACCCGTACTCTGGCGAGTACAAGTACTCGGTGGGGA
CGCTGTGTGCCTCTTGATGCGCCGTCTCTTTCCACATGAAATAGCGGCAG
GTAAAGTTGTGGTGACTCATATCGACAAGGACAATGTAGAGCAGGTACGA
CCTATTATTCTGTAGGCTTTATTTTTTAGGGTCCGATTGTACTTTGACAT
TCCTCACTTTCCCCCTTCTTGGCTGCGTAGAGCAGGATTAGCGAGATATT
GACAGATCCCACCTTTTACAATCATCTGCTGGGAGACACTTGGCTTTTCT
TCCAGGTAACAGTCAAATATCGATTGCTGATGATCGCAAAATTCGCTCAC
TAACTGAATTTTCCCCGTTCCCCCAAGTTGGACTCTCTCATTTGCTCCAA
GCAGCGGATATTGCTTCAAACATTTCTCAACAGGGATTACGGCTGGTGGG
GAGCACCATGGAAGTAAGATGCAGCTATGATGTAGCTTGAAGGCAATCAG
CTATGACACTTGTTTCAAAATGCTAACCACTCTACCCCTTTTGCACATAT
GACAGCTTCTGGGGCAGAGTTCCTCGAATATGTGGCAATGGAGGCTTCTC
GCTCCGTAAAAAACAGTTTGTTAATACCATTCTGTCACGGTAA
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Coding sequence (CDS) from alignment at chr18:80808..81450-

>NO18G00220.1 ID=NO18G00220.1|Name=NO18G00220.1|organism=Nannochloropsis oceanica|type=CDS|length=393bp|location=Sequence derived from alignment at chr18:80808..81450- (Nannochloropsis oceanica)
ATGATAATGAATTTACCCGTACTCTGGCGAGTACAAGTACTCGGTGGGGA
CGCTGTGTGCCTCTTGATGCGCCGTCTCTTTCCACATGAAATAGCGGCAG
GTAAAGTTGTGGTGACTCATATCGACAAGGACAATGTAGAGCAGAGCAGG
ATTAGCGAGATATTGACAGATCCCACCTTTTACAATCATCTGCTGGGAGA
CACTTGGCTTTTCTTCCAGTTGGACTCTCTCATTTGCTCCAAGCAGCGGA
TATTGCTTCAAACATTTCTCAACAGGGATTACGGCTGGTGGGGAGCACCA
TGGAACTTCTGGGGCAGAGTTCCTCGAATATGTGGCAATGGAGGCTTCTC
GCTCCGTAAAAAACAGTTTGTTAATACCATTCTGTCACGGTAA
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Synonyms
Publications