NO18G00200, NO18G00200 (gene) Nannochloropsis oceanica

Overview
NameNO18G00200
Unique NameNO18G00200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1163
Alignment locationchr18:77462..78624 -

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Properties
Property NameValue
DescriptionZinc finger bed domain-containing 1-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:77462..78624 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Homology
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BLAST of NO18G00200 vs. NCBI_GenBank
Match: XP_005852719.1 (zinc finger bed domain-containing 1-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU23115.1 zinc finger bed domain-containing 1-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 99.0 bits (245), Expect = 3.200e-17
Identity = 54/127 (42.52%), Postives = 71/127 (55.91%), Query Frame = 0 
Query:  222 LPVGAVPPTVGPGLESALDFHDVELENGVEVASKLTTHLSKELADMGKGKPGTLDLWWELHEECPTLNI--------------------------TKLRNPLRAEKLEKFISTKANWIDSLYHVRPK 323
            +PV A+    G  L  ALDF  V LENGV+VAS++T  LSK +  +G GK  TLDLWWELHE+CP L I                          ++LRN ++ + L++ I T+ NW  SLY+VRPK
Sbjct:  119 VPVHALANVTGLDLGPALDFDGVSLENGVDVASEITKCLSKSMQAIGLGKVRTLDLWWELHEDCPALIIVDMHYLAIPASSSAVERLFSQTGQIKSRLRNRMQPQTLDQLIFTRVNWEGSLYNVRPK 245
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BLAST of NO18G00200 vs. NCBI_GenBank
Match: XP_005852366.1 (zinc finger bed domain-containing 1-like protein [Nannochloropsis gaditana CCMP526] >EKU23461.1 zinc finger bed domain-containing 1-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 85.1 bits (209), Expect = 4.800e-13
Identity = 48/121 (39.67%), Postives = 64/121 (52.89%), Query Frame = 0 
Query:  222 LPVGAVPPTVGPGLESALDFHDVELENGVEVASKLTTHLSKELADMGKGKPGTLDLWWELHEECPTLNI--------------------------TKLRNPLRAEKLEKFISTKANWIDSL 317
            +PV A+    G  L  ALDF  V LEN V+VAS++T  LSK +  +G GK  TLDLWWELHE+CP L I                          ++LRN ++ + L++ I T+ NW  SL
Sbjct:   13 IPVRALANVTGLDLGPALDFDGVSLENRVDVASEITKCLSKSMQAIGLGKVRTLDLWWELHEDCPALIIVDMHYLAIPASSSAVERLFSQTGQIKSRLRNRMQPQTLDQLIFTRVNWEGSL 133
The following BLAST results are available for this feature:
BLAST of NO18G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852719.13.200e-1742.52zinc finger bed domain-containing 1-like protein, ... [more]
XP_005852366.14.800e-1339.67zinc finger bed domain-containing 1-like protein [... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00200.1NO18G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642341gene_9789Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00200.1NO18G00200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00200 ID=NO18G00200|Name=NO18G00200|organism=Nannochloropsis oceanica|type=gene|length=1163bp
ATGGCGGAGCGCACAACGGAGCAGAGGGGGGCCTTGCCGGCGGCGTACGC
GCTGGACGACGACCGCAACCCCGCTCTCTCCAAGAAGGTCTTCGACCCGG
AGAAGAGATTGCAGCCGGGGAACTTATCCCTCCTTGGCGAAATCGTGGCG
GTCTTCAACCCCTTTCGCCAATGGACCACGGAGCTGCAGTCGGCAGGGAT
CACCGCCTCTCTCGTCGTGCTCGCTTACTTGCAGCTGGTGGACGGCCTCC
AGGCGGATAGCGAGATCGTGGTGGAGATGCCCCTCACCGGCGCCAGCTAC
CTCGCCACGTCTGTAAGTAAGCCGGTGAGCGAGCTGGATACCTCGGTGAA
GAGGATCGTAGCGCAGGCGCGCGTGGACATGATCAAGCGGTTCCTTCTCC
GGCGGATGTTGCCGCTGACGGTGGCGACGTGCTTGGACCCGCGCATGAAG
AACCTCACGGCCTTCGGTGTGCCCGCCCACATCTCCAAAAAGGCGAGGAA
GGTGACTCACCAGCAGATGGACCGGACGATCACGGCGCTGAAGAAGGCGG
GTTTGTACCCCGTGGAGGGGCAGGGCGTGACGCGGGGCGCTGACGGTCAC
CCCAAGACGGCCGGCAGCGTCACGGCCCAGCTTTATATCAAGGCCAAGCA
GTGTAAGCAGCACTTGCCTGTGGGGGCGGTGCCGCCGACGGTGGGGCCTG
GCCTGGAGTCCGCGCTGGACTTCCATGATGTTGAGTTGGAAAACGGTGTG
GAGGTGGCGTCAAAGCTGACCACTCACCTGAGCAAAGAACTGGCGGACAT
GGGCAAGGGCAAGCCTGGCACTCTGGACCTGTGGTGGGAATTGCACGAGG
AGTGCCCTACCCTCAACATCgtggcgttgtactacctctgcatacctgcc
tcatcggcgggcgtgaacggttgttctcgaatacgggcctgatcaagACC
AAGCTGCGGAATCCGCTACGGGCCGAGAAGCTCGAGAAGTTTATCTCCAC
CAAGGCCAACTGGATCGACAGCCTCTATCATGTGCGGCCCAAGAAGGGTG
AGGAGGAGGAGGAGAAGAAGGAGGAGGAGGAGAAGAAGGAAGAGGAGGAG
GAGGAGGAGGAGGAAAAGGAGGAGGACGGCAAGGATGGGGATGAAAGAGA
AGAAGGAATATGA
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protein sequence of NO18G00200.1

>NO18G00200.1-protein ID=NO18G00200.1-protein|Name=NO18G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MAERTTEQRGALPAAYALDDDRNPALSKKVFDPEKRLQPGNLSLLGEIVA
VFNPFRQWTTELQSAGITASLVVLAYLQLVDGLQADSEIVVEMPLTGASY
LATSVSKPVSELDTSVKRIVAQARVDMIKRFLLRRMLPLTVATCLDPRMK
NLTAFGVPAHISKKARKVTHQQMDRTITALKKAGLYPVEGQGVTRGADGH
PKTAGSVTAQLYIKAKQCKQHLPVGAVPPTVGPGLESALDFHDVELENGV
EVASKLTTHLSKELADMGKGKPGTLDLWWELHEECPTLNITKLRNPLRAE
KLEKFISTKANWIDSLYHVRPKKGEEEEEKKEEEEKKEEEEEEEEEKEED
GKDGDEREEGI*
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Synonyms
Publications