NO18G00200.1, NO18G00200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00200.1
Unique NameNO18G00200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1086
Alignment locationchr18:77462..78624 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:77462..78624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00200.1 vs.
Match: XP_005852719.1 (zinc finger bed domain-containing 1-like protein, partial [Nannochloropsis gaditana CCMP526]; EKU23115.1 zinc finger bed domain-containing 1-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-14
Identity = 58/143 (40.56%), Postives = 78/143 (54.55%), Query Frame = 0 
Query:  222 LPVGAVPPTVGPGLESALDFHDVELENGVEVASKLTTHLSKELADMGKGKPGTLDLWWELHEECPTLNI--------------------------TKLRNPLRAEKLEKFISTKANWIDSLYHVRPKKGEEEEEKKEEEEKKE 339
            +PV A+    G  L  ALDF  V LENGV+VAS++T  LSK +  +G GK  TLDLWWELHE+CP L I                          ++LRN ++ + L++ I T+ NW  SLY+VRPK+    E  K  E ++E
Sbjct:  119 VPVHALANVTGLDLGPALDFDGVSLENGVDVASEITKCLSKSMQAIGLGKVRTLDLWWELHEDCPALIIVDMHYLAIPASSSAVERLFSQTGQIKSRLRNRMQPQTLDQLIFTRVNWEGSLYNVRPKQPMRAEGSKGGEAEEE 261
The following BLAST results are available for this feature:
BLAST of NO18G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852719.12.600e-1440.56zinc finger bed domain-containing 1-like protein, ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00200NO18G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00200.1NO18G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00200.1.cds1NO18G00200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00200.1.cds2NO18G00200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00200.1 ID=NO18G00200.1|Name=NO18G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp
ATGGCGGAGCGCACAACGGAGCAGAGGGGGGCCTTGCCGGCGGCGTACGC
GCTGGACGACGACCGCAACCCCGCTCTCTCCAAGAAGGTCTTCGACCCGG
AGAAGAGATTGCAGCCGGGGAACTTATCCCTCCTTGGCGAAATCGTGGCG
GTCTTCAACCCCTTTCGCCAATGGACCACGGAGCTGCAGTCGGCAGGGAT
CACCGCCTCTCTCGTCGTGCTCGCTTACTTGCAGCTGGTGGACGGCCTCC
AGGCGGATAGCGAGATCGTGGTGGAGATGCCCCTCACCGGCGCCAGCTAC
CTCGCCACGTCTGTAAGTAAGCCGGTGAGCGAGCTGGATACCTCGGTGAA
GAGGATCGTAGCGCAGGCGCGCGTGGACATGATCAAGCGGTTCCTTCTCC
GGCGGATGTTGCCGCTGACGGTGGCGACGTGCTTGGACCCGCGCATGAAG
AACCTCACGGCCTTCGGTGTGCCCGCCCACATCTCCAAAAAGGCGAGGAA
GGTGACTCACCAGCAGATGGACCGGACGATCACGGCGCTGAAGAAGGCGG
GTTTGTACCCCGTGGAGGGGCAGGGCGTGACGCGGGGCGCTGACGGTCAC
CCCAAGACGGCCGGCAGCGTCACGGCCCAGCTTTATATCAAGGCCAAGCA
GTGTAAGCAGCACTTGCCTGTGGGGGCGGTGCCGCCGACGGTGGGGCCTG
GCCTGGAGTCCGCGCTGGACTTCCATGATGTTGAGTTGGAAAACGGTGTG
GAGGTGGCGTCAAAGCTGACCACTCACCTGAGCAAAGAACTGGCGGACAT
GGGCAAGGGCAAGCCTGGCACTCTGGACCTGTGGTGGGAATTGCACGAGG
AGTGCCCTACCCTCAACATCACCAAGCTGCGGAATCCGCTACGGGCCGAG
AAGCTCGAGAAGTTTATCTCCACCAAGGCCAACTGGATCGACAGCCTCTA
TCATGTGCGGCCCAAGAAGGGTGAGGAGGAGGAGGAGAAGAAGGAGGAGG
AGGAGAAGAAGGAAGAGGAGGAGGAGGAGGAGGAGGAAAAGGAGGAGGAC
GGCAAGGATGGGGATGAAAGAGAAGAAGGAATATGA
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protein sequence of NO18G00200.1

>NO18G00200.1-protein ID=NO18G00200.1-protein|Name=NO18G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MAERTTEQRGALPAAYALDDDRNPALSKKVFDPEKRLQPGNLSLLGEIVA
VFNPFRQWTTELQSAGITASLVVLAYLQLVDGLQADSEIVVEMPLTGASY
LATSVSKPVSELDTSVKRIVAQARVDMIKRFLLRRMLPLTVATCLDPRMK
NLTAFGVPAHISKKARKVTHQQMDRTITALKKAGLYPVEGQGVTRGADGH
PKTAGSVTAQLYIKAKQCKQHLPVGAVPPTVGPGLESALDFHDVELENGV
EVASKLTTHLSKELADMGKGKPGTLDLWWELHEECPTLNITKLRNPLRAE
KLEKFISTKANWIDSLYHVRPKKGEEEEEKKEEEEKKEEEEEEEEEKEED
GKDGDEREEGI*
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mRNA from alignment at chr18:77462..78624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00200.1 ID=NO18G00200.1|Name=NO18G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1163bp|location=Sequence derived from alignment at chr18:77462..78624- (Nannochloropsis oceanica)
ATGGCGGAGCGCACAACGGAGCAGAGGGGGGCCTTGCCGGCGGCGTACGC
GCTGGACGACGACCGCAACCCCGCTCTCTCCAAGAAGGTCTTCGACCCGG
AGAAGAGATTGCAGCCGGGGAACTTATCCCTCCTTGGCGAAATCGTGGCG
GTCTTCAACCCCTTTCGCCAATGGACCACGGAGCTGCAGTCGGCAGGGAT
CACCGCCTCTCTCGTCGTGCTCGCTTACTTGCAGCTGGTGGACGGCCTCC
AGGCGGATAGCGAGATCGTGGTGGAGATGCCCCTCACCGGCGCCAGCTAC
CTCGCCACGTCTGTAAGTAAGCCGGTGAGCGAGCTGGATACCTCGGTGAA
GAGGATCGTAGCGCAGGCGCGCGTGGACATGATCAAGCGGTTCCTTCTCC
GGCGGATGTTGCCGCTGACGGTGGCGACGTGCTTGGACCCGCGCATGAAG
AACCTCACGGCCTTCGGTGTGCCCGCCCACATCTCCAAAAAGGCGAGGAA
GGTGACTCACCAGCAGATGGACCGGACGATCACGGCGCTGAAGAAGGCGG
GTTTGTACCCCGTGGAGGGGCAGGGCGTGACGCGGGGCGCTGACGGTCAC
CCCAAGACGGCCGGCAGCGTCACGGCCCAGCTTTATATCAAGGCCAAGCA
GTGTAAGCAGCACTTGCCTGTGGGGGCGGTGCCGCCGACGGTGGGGCCTG
GCCTGGAGTCCGCGCTGGACTTCCATGATGTTGAGTTGGAAAACGGTGTG
GAGGTGGCGTCAAAGCTGACCACTCACCTGAGCAAAGAACTGGCGGACAT
GGGCAAGGGCAAGCCTGGCACTCTGGACCTGTGGTGGGAATTGCACGAGG
AGTGCCCTACCCTCAACATCGTGGCGTTGTACTACCTCTGCATACCTGCC
TCATCGGCGGGCGTGAACGGTTGTTCTCGAATACGGGCCTGATCAAGACC
AAGCTGCGGAATCCGCTACGGGCCGAGAAGCTCGAGAAGTTTATCTCCAC
CAAGGCCAACTGGATCGACAGCCTCTATCATGTGCGGCCCAAGAAGGGTG
AGGAGGAGGAGGAGAAGAAGGAGGAGGAGGAGAAGAAGGAAGAGGAGGAG
GAGGAGGAGGAGGAAAAGGAGGAGGACGGCAAGGATGGGGATGAAAGAGA
AGAAGGAATATGA
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Coding sequence (CDS) from alignment at chr18:77462..78624-

>NO18G00200.1 ID=NO18G00200.1|Name=NO18G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at chr18:77462..78624- (Nannochloropsis oceanica)
ATGGCGGAGCGCACAACGGAGCAGAGGGGGGCCTTGCCGGCGGCGTACGC
GCTGGACGACGACCGCAACCCCGCTCTCTCCAAGAAGGTCTTCGACCCGG
AGAAGAGATTGCAGCCGGGGAACTTATCCCTCCTTGGCGAAATCGTGGCG
GTCTTCAACCCCTTTCGCCAATGGACCACGGAGCTGCAGTCGGCAGGGAT
CACCGCCTCTCTCGTCGTGCTCGCTTACTTGCAGCTGGTGGACGGCCTCC
AGGCGGATAGCGAGATCGTGGTGGAGATGCCCCTCACCGGCGCCAGCTAC
CTCGCCACGTCTGTAAGTAAGCCGGTGAGCGAGCTGGATACCTCGGTGAA
GAGGATCGTAGCGCAGGCGCGCGTGGACATGATCAAGCGGTTCCTTCTCC
GGCGGATGTTGCCGCTGACGGTGGCGACGTGCTTGGACCCGCGCATGAAG
AACCTCACGGCCTTCGGTGTGCCCGCCCACATCTCCAAAAAGGCGAGGAA
GGTGACTCACCAGCAGATGGACCGGACGATCACGGCGCTGAAGAAGGCGG
GTTTGTACCCCGTGGAGGGGCAGGGCGTGACGCGGGGCGCTGACGGTCAC
CCCAAGACGGCCGGCAGCGTCACGGCCCAGCTTTATATCAAGGCCAAGCA
GTGTAAGCAGCACTTGCCTGTGGGGGCGGTGCCGCCGACGGTGGGGCCTG
GCCTGGAGTCCGCGCTGGACTTCCATGATGTTGAGTTGGAAAACGGTGTG
GAGGTGGCGTCAAAGCTGACCACTCACCTGAGCAAAGAACTGGCGGACAT
GGGCAAGGGCAAGCCTGGCACTCTGGACCTGTGGTGGGAATTGCACGAGG
AGTGCCCTACCCTCAACATCACCAAGCTGCGGAATCCGCTACGGGCCGAG
AAGCTCGAGAAGTTTATCTCCACCAAGGCCAACTGGATCGACAGCCTCTA
TCATGTGCGGCCCAAGAAGGGTGAGGAGGAGGAGGAGAAGAAGGAGGAGG
AGGAGAAGAAGGAAGAGGAGGAGGAGGAGGAGGAGGAAAAGGAGGAGGAC
GGCAAGGATGGGGATGAAAGAGAAGAAGGAATATGA
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Synonyms
Publications