NO18G00160, NO18G00160 (gene) Nannochloropsis oceanica

Overview
NameNO18G00160
Unique NameNO18G00160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1812
Alignment locationchr18:65824..67635 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:65824..67635 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Homology
BLAST of NO18G00160 vs. NCBI_GenBank
Match: CBN76713.1 (hypothetical protein Esi_0000_0516 [Ectocarpus siliculosus])

HSP 1 Score: 158.7 bits (400), Expect = 5.700e-35
Identity = 151/556 (27.16%), Postives = 235/556 (42.27%), Query Frame = 0
Query:    2 WEANSRLLAVGGFAPSAELRDNNQVSTLLSLWVRSCLEEYNLASGDFVGSVTDHGSDVK-RCCTAGDCLDFKHEWCSPHMFSRAIVEGVEYSEAREDTANENGRKLLMEVRKMITHISKRGRALMKAVFDESQTELFGKSL--KLTNMAMQRWSSTERTLYLALGDWRAILRTYHVRSKRVQLGKKRQELVELYSLFYRVNLLLKDSQGSSVTSGPLLVMRVILLLQNELALDKPLIVIDPAVVEKKDEAVDLEERGAGPVLPRGHTAVRAAALTDVGTKSRRLLRESIIKRFVKSRYHSTGDCGKPSYLVDAAALAHPGLMKMKWVDKMADSKGHATLVESKIEDVIIVMLEELHFNKWLGVGGGEEFEDENISSQPPKRTLPEYRKATTSDIAAMMSDDEDDCQAV----------------ASGPMTSYAWARAKLVEFFDWCGGKGDKVDIAKKMQWKDISSWWLMTGSGMFPELAQIFQALLSMPRGAASLGRDFSIASNVLTVHCAQLDQAFVEMTMLQNMNIDKIPPLSDIRELTVTEAKEVMPRRLRN 539
            W   SRLLAV  F P+ E+ +N ++S +L  ++   LEE+ L       + +D GSDVK R C     +    + C  HM + ++VE +          N   RK+++ V+K++ HI +      KA+F E Q   + + L  KL N+A QRWS     L   + +   I   Y        L     E+ ELYSL   V  L+   Q + V +G   V+ +  L  +   +D  L V+ P   +   E     ER A  V PR H       LT VG  +R  L  ++ +R+    Y S        ++ D     HP    +++VDK+  ++ HA  V+  I D II +  EL   +      G E +DE+++    KR  P     +     A   + +DD                    AS   T    ARA+L        G      +   +  + +  WW   G  ++P LA+  + +   P  AA L RDF+ A  ++    +  D  +VEM +  + N+D IP    I EL   + +  +P RL N
Sbjct:  102 WRLKSRLLAVRQFNPTLEMFENERLSAVLEKYLTDVLEEFGLDVSMLFSATSDAGSDVKHRLCHT--LIPRLWKSCVCHMLNCSLVEAIGTRVDSRKPGNPAARKVVLAVKKVVEHIRRSKSPGAKAIFQEEQVRHYSQCLHRKLVNVAPQRWSGVSGVLEATIVNRVGIDGVYAREGSVNPLAPHENEIDELYSLIKPVAELIVTCQQTHVPTGQAAVLGLATLKLSTFNVDARLDVLTPVRAQGWPEGTGGGERKATSV-PRLHN-----HLTQVGRDAREHLASALDRRYFDRCYKSADSEKTTDFVFDMQMGLHPTTADLQYVDKLTSTEVHAAFVKKSITDKIIALAVELAEKEMERKQAGPE-QDESVA----KRARPAAAPGSLQTAVAKARNKKDDAATAKFASLGLFKKRRGGGEASQQPTFEPMARAELETLRGVEAG-----TLTDDLSCEGVLEWWKKWGR-LYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIP--EQIPELRDEDVQAKIPGRLSN 636          
BLAST of NO18G00160 vs. NCBI_GenBank
Match: CBN79964.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 144.1 bits (362), Expect = 1.500e-30
Identity = 146/555 (26.31%), Postives = 240/555 (43.24%), Query Frame = 0
Query:    1 MWEANSRLLAVGGFAPSAELRDNNQVSTLLSLWVRSCLEEYNLASGDFVGSVTDHGSDVKRCCTAGDCLDFKHEWCSPHMFSRAIVEGVEYSEAREDTANENGRKLLMEVRKMITHISKRGRALMKAVFDESQTELFGK--SLKLTNMAMQRWSSTERTLYLALGDWRAILRTYHVRSKRVQLGKKRQELVELYSLFYRVNLLLKDSQGSSVTSGPLLVMRVILLLQNELALDKPLIVIDPAVVEKKDEAVDLEERGAGPVLPRGHTAVRAAALTDVGTKSRRLLRESIIKRFVKSRYHSTGDCGKPSYLV-DAAALAHPGLMKMKWVDKMADSKGHATLVESKIEDVIIVMLEELHFNKWLGVGGGEEFEDENISSQPPKRTLP-----------EYRKATTSDIAAMMSDDEDDCQAVASGPMTSYAWARAKLVEFFDWCGGKGDKVDIAKKMQWKDISSWWLMTGSGMFPELAQIFQALLSMPRGAASLGRDFSIASNVLTVHCAQLDQAFVEMTMLQNMNIDKIPPLSDIRELT---VTEAKEVMPRRLRN 539
            +W+  S LLAV  F P+ E   N ++S LL  +V + LEE+ + +     + +D G DVKR C+    L    EWC  HM S ++ E V      +       R ++M V+K +  + K   +  K +F E Q   F +  + K+ N A QRWS     L   + +  AI   Y    +   L     E+ ELYSL   V  ++   Q +   +G   V+ +  L  + L  D PL ++ PA   K  +       G      R H       LT VG ++R  L  ++  R    RY ST    K + LV D     HP    +++V ++A ++GHA +V+  I D II +  +L  +K     G E  + E  + + P+ + P            +++ATT+ I A +       +  ++ P+     ARA+L    +      D   +      + + +WW       +P LA++ + + + P       RD   A  ++T   +  D  +VEM +  + N+D +P +  I EL    V   +  +P RL N
Sbjct:  212 VWQLKSYLLAVRQFNPTPETLKNERLSELLEKYVFAVLEEFGIDASLLFSATSDAGGDVKRLCSV--LLPGLREWCVCHMLSDSLAEAVGTCVGPQQPGGRAARNVVMAVKKAVERVRKSPAS--KDIFTEEQVIQFSQCSNRKVVNAAPQRWSGVTGALEATVTNRAAINGVYAEEGEDSPLSPHVHEIDELYSLIQPVAEVIATCQQTHFPTGQAAVLGLAALKLSTLNADAPLDILTPA--SKPTQGATEGAGGEQRTTARAH-----KDLTRVGREAREHLASALHWRDFDKRYKST--VAKSTGLVFDMQMGLHPCTADLQYVSRLAPTEGHAAVVKKNITDKIIALAAKL-ADKKAERKGIEAEQGEPAAKRAPQASAPGNTYPMFASARYHKEATTTAIMAGLGLIATRDEGTSASPIER---ARAEL----ETLRSASDDA-LFGDTSCEGVLNWW-KRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEI--IPELPADGVNGVQTKIPGRLSN 741          
BLAST of NO18G00160 vs. NCBI_GenBank
Match: CBJ33761.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 122.9 bits (307), Expect = 3.500e-24
Identity = 91/328 (27.74%), Postives = 154/328 (46.95%), Query Frame = 0
Query:    6 SRLLAVGGFAPSAELRDNNQVSTLLSLWVRSCLEEYNLASGDFVGSVTDHGSDVKRCCTAGDCLDFKHEWCSPHMFSRAIVEGVEYSEAREDTANENGRKLLMEVRKMITHISKRG--RALMKAVFDESQTELFGKSLKLTNMAMQRWSSTERTLYLALGDWRAILRTYHVRSKRVQLGKKRQELVELYSLFYRVNLLLKDSQGSSVTSGPLLVMRVILLLQNELALDKPLIVIDPAVVEKKDEAVDLEERGAGPVLPRGHTAVRAAALTDVGTKSRRLLRESIIKRFVKSRYHSTGDCGKPSYLVDAAALAHPGLMKMKWVDKMADS 332
            + LLA+ GF P        Q   ++  WVR  L ++ +   D  G+VTD GSDV++    G    +  EWC PH  +RA ++G   ++ +E + N   R LL  ++ ++ H +K    +  ++ + DE  ++  G + KL+    QRW S  + L   L  W A+ + Y    K   L  +++E+ E+Y++   V  ++  SQ +  ++    + R+++L  + L   +PL V     + +K++ V     G        HT      LT V   +R    E++ KRFVK RY S    G  S+  D A    P    MK++D +  S
Sbjct:  179 THLLAIRGFRPPGA-----QTGDVVCKWVRQVLGQHGIRDEDIAGAVTDAGSDVRK----GVSQAWPWEWCLPHALNRATIDGTGMTQVKEKSKNPLCRDLLELIKGIVGHFNKSAADKIALEEIIDE-MSQGKGSTAKLSQAVAQRWISICKMLLRVLERWDALKKIYLDSDKEFPLRSRKKEVEEVYTIINAVKAVVVYSQTTYESTAQGGLQRLVVLATSTLEPMRPLTVTPVRAIGQKEDEVPAASTGP-------HT-----DLTKVAMATREAFAEAVAKRFVKGRYGS--GLGTHSHRFDMAMFLCPSARGMKYIDTLEAS 482          
BLAST of NO18G00160 vs. NCBI_GenBank
Match: CBJ27010.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 119.4 bits (298), Expect = 3.900e-23
Identity = 91/328 (27.74%), Postives = 153/328 (46.65%), Query Frame = 0
Query:    6 SRLLAVGGFAPSAELRDNNQVSTLLSLWVRSCLEEYNLASGDFVGSVTDHGSDVKRCCTAGDCLDFKHEWCSPHMFSRAIVEGVEYSEAREDTANENGRKLLMEVRKMITHISKRG--RALMKAVFDESQTELFGKSLKLTNMAMQRWSSTERTLYLALGDWRAILRTYHVRSKRVQLGKKRQELVELYSLFYRVNLLLKDSQGSSVTSGPLLVMRVILLLQNELALDKPLIVIDPAVVEKKDEAVDLEERGAGPVLPRGHTAVRAAALTDVGTKSRRLLRESIIKRFVKSRYHSTGDCGKPSYLVDAAALAHPGLMKMKWVDKMADS 332
            + LLA+ GF P        Q   ++  WVR  L ++ +   D  G+VTD GSDV++    G    +  EWC PH  +RA ++G   ++ +E + N   R LL  ++ ++ H +K    +  ++ + DE  ++  G + KL+    QRW    R L   L  W A+ + Y    K   L  +++E+ E+Y++   V  ++  SQ +  ++    + R+++L  + L   +PL V     + +K++ V            R HT      LT V   +R    E++ KRFVK RY S    G  S+  D A    P    MK++D +  S
Sbjct:  179 THLLAIRGFRPPGA-----QTGDVVCKWVRQVLGQHGIRDEDIAGAVTDAGSDVRK----GVSQAWPWEWCLPHALNRATIDGTGMTQVKEKSKNPLCRDLLELIKGIVGHFNKSAADKIALEEIIDE-MSQGKGSTAKLSQAVAQRWIRICRMLLRVLERWDALKKFYLDSDKEFPLRSRKKEVEEVYTIINGVKAVVVYSQITYESTAQGGLQRLVVLATSTLEPMRPLTVTPVRAIGQKEDEVPAAS-------TRPHT-----DLTKVAMATREAFAEAVAKRFVKGRYGS--GLGTHSHRFDMAMFLCPSARGMKYIDTLEAS 482          
BLAST of NO18G00160 vs. NCBI_GenBank
Match: CBJ26359.1 (hypothetical protein Esi_0032_0065 [Ectocarpus siliculosus])

HSP 1 Score: 74.3 bits (181), Expect = 1.400e-9
Identity = 68/267 (25.47%), Postives = 120/267 (44.94%), Query Frame = 0
Query:   33 WVRSCLEEYNLASGDFVGSVTDHGSDVKRCCTAGDCLDFKHEWCSPHMFSRAIVEGVEYSEAREDTANENGRKLLMEVRKMITHISKRGRALMKAVFDESQTELFGKSLKLTNMAMQRWSSTERTLYLALGDWRAILRTYHVRSKRVQLGKKRQELVELYSLFYRVNLLLKDSQGSSVTSGPLLVMRVILLLQNELALDKPLIVIDPAVVEKKDEAVDLEERGAGPVLPRGHTAVRAAALTDVGTKSRRLLRESIIKRFVKSRYHST 300
            W    L+E+ L +  F G+V+  G +V    T      F+ E   PH+ +RA ++G   S +   + N   R +L +  K+I   ++      K +F E   +L   + KL+   +QRW ST + L   L  W A+   Y  +++   L   R E  E++S+    + + +  Q +   +    + R+++LL + L  ++ L V       +   A+  E   A P   R H       LT +G K+R +   ++ +RF+  RY ST
Sbjct:   83 WNEQVLDEHGLRAESFNGAVSGSGPEVSTGITG----RFRRELSIPHLVNRAAIDGTGMSSSPASSKNAECRAMLKKAEKVIQLFNRSTED--KILFGEDWDDL--HTGKLSQAVVQRWISTCKMLLALLERWEALQEFYTNKNEEFPLATLRTEFEEVHSIMSAASNVAEYCQETYKATAEGGLTRIVVLLTDTLESNETLRV-------QHVPAIGAEVTDAAPHTDRPHD-----CLTAIGMKTRVVFATAVARRFL-CRYGST 328          
The following BLAST results are available for this feature:
BLAST of NO18G00160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
CBN76713.15.700e-3527.16hypothetical protein Esi_0000_0516 [Ectocarpus sil... [more]
CBN79964.11.500e-3026.31expressed unknown protein [Ectocarpus siliculosus][more]
CBJ33761.13.500e-2427.74conserved unknown protein [Ectocarpus siliculosus][more]
CBJ27010.13.900e-2327.74conserved unknown protein [Ectocarpus siliculosus][more]
CBJ26359.11.400e-925.47hypothetical protein Esi_0032_0065 [Ectocarpus sil... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00160.1NO18G00160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658608gene_9786Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00160.1NO18G00160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00160 ID=NO18G00160|Name=NO18G00160|organism=Nannochloropsis oceanica|type=gene|length=1812bp
ATGTGGGAGGCGAATTCCCGGTTACTGGCTGTTGGAGGCTTTGCCCCCTC
CGCGGAACTCCGCGACAACAACCAGGTCTCTACCTTGCTCTCCCTGTGGG
TAAGATCTTGTCTTGAGGAGTACAACCTTGCTTCCGGAGATTTTGTGGGC
TCCGTGACAGACCATGGCAGCGATGTGAAGCGGTGCTGTACGGCCGGAGA
TTGCTTGGATTTCAAACATGAGTGGTGCAGCCCACATATGTTCAGCCGTG
CGATTGTGGAAGGGGTGGAATATTCAGAGGCAAGGGAAGATACGGCAAAC
GAGAATGGGAGGAAACTGCTAATGGAGGTGCGGAAGATGATCACACATAT
CTCTAAGAGAGGCAGAGCTCTGATGAAAGCTGTGTTTGACGAGTCGCAGA
CGGAATTGTTCGGCAAGTCCCTCAAGCTCACCAACATGGCCATGCAGCGG
TGGTCATCTACTGAGCGAACGCTCTATCTTGCGCTTGGAGATTGGAGAGC
AATCCTGAGGACATATCATGTGCGGAGCAAGCGGGTGCAGCTCGGGAAAA
AGAGGCAGGAATTGGTGGAACTATATAGCCTGTTTTACAGGGTCAATCTC
CTTTTGAAGGACTCGCAGGGCTCCTCTGTCACGTCAGGGCCCCTCCTCGT
CATGCGTGTCATCCTCCTCCTACAAAACGAGCTTGCTTTGGACAAGCCTC
TAATTGTGATTGACCCTGCCGTCGTGGAGAAAAAGGATGAGGCAGTGGAC
CTAGAGGAACGAGGAGCGGGGCCTGTGCTGCCTCGCGGTCACACGGCTGT
ACGCGCAGCTGCTCTGACGGATGTTGGAACAAAGAGCAGGAGGCTGCTGC
GTGAGAGCATTATCAAGCGTTTTGTGAAGAGCAGGTACCATTCCACCGGA
GATTGTGGAAAGCCCTCCTACCTCGTTGATGCAGCGGCTTTGGCACACCC
TGGCCTAATGAAGATGAAGTGGGTAGATAAGATGGCGGACTCCAAAGGGC
ACGCTACGCTGGTGGAAAGCAAGATCGAAGACGTAATCATTGTTATGTTG
GAGGAATTGCATTTCAACAAATGGTTGGGGGTGGGTGGAGGTGAGGAATT
TGAGGATGAGAACATTTCCAGCCAACCGCCGAAGAGGACCTTGCCTGAAT
ACAGAAAGGCGACTACCAGTGACATCGCTGCCATGATGTCTGACGATGAG
GATGACTGTCAGGCTGTAGCGTCTGGCCCCATGACCTCGTACGCATGGGC
TAGGGCGAAACTGGTTGAGTTTTTTGATTGGTGCGGGGGGAAGGGCGACA
AAGTAGACATTGCGAAAAAAATGCAGTGGAAAGACATCTCCAGCTGGTGG
CTCATGACAGGGAGCGGCATGTTCCCTGAACTTGCTCAGATCTTTCAAGC
TCTCCTCTCCATGCCTCGTGGTGCCGCGTCGCTCGGGCGAGACTTTAGCA
TTGCGAGCAACGTGTTGACCGTACACTGCGCTCAGCTAGATCAGGCATTT
GTGGAGATGACCATGCTTCAAAACATGAACATAGACAAAATTCCGCCCCT
CTCCGACATCCGGGAGCTGACAGTTACGGAGGCGAAAGAAGTAATGCCAC
GACGACTGCGAAACAAGGATGATTTTCAGAAGTTTCTTCATTTGGATGAG
TCTGTGACGAAGGAGGGGGAGAAGGAAGACGACGCCGAGGCCGAGGAGAA
TGATAAACAGGCGACGGAAACAACGAGGTATGGAGCCAATGATGGTGCAG
ATGATGATGAGATTGACGACGGTTATGATGATAATGATGATGACGATGAT
GGTGATGCGTAA
back to top

protein sequence of NO18G00160.1

>NO18G00160.1-protein ID=NO18G00160.1-protein|Name=NO18G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MWEANSRLLAVGGFAPSAELRDNNQVSTLLSLWVRSCLEEYNLASGDFVG
SVTDHGSDVKRCCTAGDCLDFKHEWCSPHMFSRAIVEGVEYSEAREDTAN
ENGRKLLMEVRKMITHISKRGRALMKAVFDESQTELFGKSLKLTNMAMQR
WSSTERTLYLALGDWRAILRTYHVRSKRVQLGKKRQELVELYSLFYRVNL
LLKDSQGSSVTSGPLLVMRVILLLQNELALDKPLIVIDPAVVEKKDEAVD
LEERGAGPVLPRGHTAVRAAALTDVGTKSRRLLRESIIKRFVKSRYHSTG
DCGKPSYLVDAAALAHPGLMKMKWVDKMADSKGHATLVESKIEDVIIVML
EELHFNKWLGVGGGEEFEDENISSQPPKRTLPEYRKATTSDIAAMMSDDE
DDCQAVASGPMTSYAWARAKLVEFFDWCGGKGDKVDIAKKMQWKDISSWW
LMTGSGMFPELAQIFQALLSMPRGAASLGRDFSIASNVLTVHCAQLDQAF
VEMTMLQNMNIDKIPPLSDIRELTVTEAKEVMPRRLRNKDDFQKFLHLDE
SVTKEGEKEDDAEAEENDKQATETTRYGANDGADDDEIDDGYDDNDDDDD
GDA*
back to top
Synonyms
Publications