NO18G00160.1, NO18G00160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00160.1
Unique NameNO18G00160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1812
Alignment locationchr18:65824..67635 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:65824..67635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00160.1 vs.
Match: CBN76713.1 (hypothetical protein Esi_0000_0516 [Ectocarpus siliculosus])

HSP 1 Score: 158.7 bits (400), Expect = 5.700e-35
Identity = 151/556 (27.16%), Postives = 235/556 (42.27%), Query Frame = 0 
Query:    2 WEANSRLLAVGGFAPSAELRDNNQVSTLLSLWVRSCLEEYNLASGDFVGSVTDHGSDVK-RCCTAGDCLDFKHEWCSPHMFSRAIVEGVEYSEAREDTANENGRKLLMEVRKMITHISKRGRALMKAVFDESQTELFGKSL--KLTNMAMQRWSSTERTLYLALGDWRAILRTYHVRSKRVQLGKKRQELVELYSLFYRVNLLLKDSQGSSVTSGPLLVMRVILLLQNELALDKPLIVIDPAVVEKKDEAVDLEERGAGPVLPRGHTAVRAAALTDVGTKSRRLLRESIIKRFVKSRYHSTGDCGKPSYLVDAAALAHPGLMKMKWVDKMADSKGHATLVESKIEDVIIVMLEELHFNKWLGVGGGEEFEDENISSQPPKRTLPEYRKATTSDIAAMMSDDEDDCQAV----------------ASGPMTSYAWARAKLVEFFDWCGGKGDKVDIAKKMQWKDISSWWLMTGSGMFPELAQIFQALLSMPRGAASLGRDFSIASNVLTVHCAQLDQAFVEMTMLQNMNIDKIPPLSDIRELTVTEAKEVMPRRLRN 539
            W   SRLLAV  F P+ E+ +N ++S +L  ++   LEE+ L       + +D GSDVK R C     +    + C  HM + ++VE +          N   RK+++ V+K++ HI +      KA+F E Q   + + L  KL N+A QRWS     L   + +   I   Y        L     E+ ELYSL   V  L+   Q + V +G   V+ +  L  +   +D  L V+ P   +   E     ER A  V PR H       LT VG  +R  L  ++ +R+    Y S        ++ D     HP    +++VDK+  ++ HA  V+  I D II +  EL   +      G E +DE+++    KR  P     +     A   + +DD                    AS   T    ARA+L        G      +   +  + +  WW   G  ++P LA+  + +   P  AA L RDF+ A  ++    +  D  +VEM +  + N+D IP    I EL   + +  +P RL N
Sbjct:  102 WRLKSRLLAVRQFNPTLEMFENERLSAVLEKYLTDVLEEFGLDVSMLFSATSDAGSDVKHRLCHT--LIPRLWKSCVCHMLNCSLVEAIGTRVDSRKPGNPAARKVVLAVKKVVEHIRRSKSPGAKAIFQEEQVRHYSQCLHRKLVNVAPQRWSGVSGVLEATIVNRVGIDGVYAREGSVNPLAPHENEIDELYSLIKPVAELIVTCQQTHVPTGQAAVLGLATLKLSTFNVDARLDVLTPVRAQGWPEGTGGGERKATSV-PRLHN-----HLTQVGRDAREHLASALDRRYFDRCYKSADSEKTTDFVFDMQMGLHPTTADLQYVDKLTSTEVHAAFVKKSITDKIIALAVELAEKEMERKQAGPE-QDESVA----KRARPAAAPGSLQTAVAKARNKKDDAATAKFASLGLFKKRRGGGEASQQPTFEPMARAELETLRGVEAG-----TLTDDLSCEGVLEWWKKWGR-LYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIP--EQIPELRDEDVQAKIPGRLSN 636
The following BLAST results are available for this feature:
BLAST of NO18G00160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN76713.15.700e-3527.16hypothetical protein Esi_0000_0516 [Ectocarpus sil... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00160NO18G00160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00160.1NO18G00160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00160.1.cds1NO18G00160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00160.1 ID=NO18G00160.1|Name=NO18G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp
ATGTGGGAGGCGAATTCCCGGTTACTGGCTGTTGGAGGCTTTGCCCCCTC
CGCGGAACTCCGCGACAACAACCAGGTCTCTACCTTGCTCTCCCTGTGGG
TAAGATCTTGTCTTGAGGAGTACAACCTTGCTTCCGGAGATTTTGTGGGC
TCCGTGACAGACCATGGCAGCGATGTGAAGCGGTGCTGTACGGCCGGAGA
TTGCTTGGATTTCAAACATGAGTGGTGCAGCCCACATATGTTCAGCCGTG
CGATTGTGGAAGGGGTGGAATATTCAGAGGCAAGGGAAGATACGGCAAAC
GAGAATGGGAGGAAACTGCTAATGGAGGTGCGGAAGATGATCACACATAT
CTCTAAGAGAGGCAGAGCTCTGATGAAAGCTGTGTTTGACGAGTCGCAGA
CGGAATTGTTCGGCAAGTCCCTCAAGCTCACCAACATGGCCATGCAGCGG
TGGTCATCTACTGAGCGAACGCTCTATCTTGCGCTTGGAGATTGGAGAGC
AATCCTGAGGACATATCATGTGCGGAGCAAGCGGGTGCAGCTCGGGAAAA
AGAGGCAGGAATTGGTGGAACTATATAGCCTGTTTTACAGGGTCAATCTC
CTTTTGAAGGACTCGCAGGGCTCCTCTGTCACGTCAGGGCCCCTCCTCGT
CATGCGTGTCATCCTCCTCCTACAAAACGAGCTTGCTTTGGACAAGCCTC
TAATTGTGATTGACCCTGCCGTCGTGGAGAAAAAGGATGAGGCAGTGGAC
CTAGAGGAACGAGGAGCGGGGCCTGTGCTGCCTCGCGGTCACACGGCTGT
ACGCGCAGCTGCTCTGACGGATGTTGGAACAAAGAGCAGGAGGCTGCTGC
GTGAGAGCATTATCAAGCGTTTTGTGAAGAGCAGGTACCATTCCACCGGA
GATTGTGGAAAGCCCTCCTACCTCGTTGATGCAGCGGCTTTGGCACACCC
TGGCCTAATGAAGATGAAGTGGGTAGATAAGATGGCGGACTCCAAAGGGC
ACGCTACGCTGGTGGAAAGCAAGATCGAAGACGTAATCATTGTTATGTTG
GAGGAATTGCATTTCAACAAATGGTTGGGGGTGGGTGGAGGTGAGGAATT
TGAGGATGAGAACATTTCCAGCCAACCGCCGAAGAGGACCTTGCCTGAAT
ACAGAAAGGCGACTACCAGTGACATCGCTGCCATGATGTCTGACGATGAG
GATGACTGTCAGGCTGTAGCGTCTGGCCCCATGACCTCGTACGCATGGGC
TAGGGCGAAACTGGTTGAGTTTTTTGATTGGTGCGGGGGGAAGGGCGACA
AAGTAGACATTGCGAAAAAAATGCAGTGGAAAGACATCTCCAGCTGGTGG
CTCATGACAGGGAGCGGCATGTTCCCTGAACTTGCTCAGATCTTTCAAGC
TCTCCTCTCCATGCCTCGTGGTGCCGCGTCGCTCGGGCGAGACTTTAGCA
TTGCGAGCAACGTGTTGACCGTACACTGCGCTCAGCTAGATCAGGCATTT
GTGGAGATGACCATGCTTCAAAACATGAACATAGACAAAATTCCGCCCCT
CTCCGACATCCGGGAGCTGACAGTTACGGAGGCGAAAGAAGTAATGCCAC
GACGACTGCGAAACAAGGATGATTTTCAGAAGTTTCTTCATTTGGATGAG
TCTGTGACGAAGGAGGGGGAGAAGGAAGACGACGCCGAGGCCGAGGAGAA
TGATAAACAGGCGACGGAAACAACGAGGTATGGAGCCAATGATGGTGCAG
ATGATGATGAGATTGACGACGGTTATGATGATAATGATGATGACGATGAT
GGTGATGCGTAA
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protein sequence of NO18G00160.1

>NO18G00160.1-protein ID=NO18G00160.1-protein|Name=NO18G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MWEANSRLLAVGGFAPSAELRDNNQVSTLLSLWVRSCLEEYNLASGDFVG
SVTDHGSDVKRCCTAGDCLDFKHEWCSPHMFSRAIVEGVEYSEAREDTAN
ENGRKLLMEVRKMITHISKRGRALMKAVFDESQTELFGKSLKLTNMAMQR
WSSTERTLYLALGDWRAILRTYHVRSKRVQLGKKRQELVELYSLFYRVNL
LLKDSQGSSVTSGPLLVMRVILLLQNELALDKPLIVIDPAVVEKKDEAVD
LEERGAGPVLPRGHTAVRAAALTDVGTKSRRLLRESIIKRFVKSRYHSTG
DCGKPSYLVDAAALAHPGLMKMKWVDKMADSKGHATLVESKIEDVIIVML
EELHFNKWLGVGGGEEFEDENISSQPPKRTLPEYRKATTSDIAAMMSDDE
DDCQAVASGPMTSYAWARAKLVEFFDWCGGKGDKVDIAKKMQWKDISSWW
LMTGSGMFPELAQIFQALLSMPRGAASLGRDFSIASNVLTVHCAQLDQAF
VEMTMLQNMNIDKIPPLSDIRELTVTEAKEVMPRRLRNKDDFQKFLHLDE
SVTKEGEKEDDAEAEENDKQATETTRYGANDGADDDEIDDGYDDNDDDDD
GDA*
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mRNA from alignment at chr18:65824..67635-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00160.1 ID=NO18G00160.1|Name=NO18G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp|location=Sequence derived from alignment at chr18:65824..67635- (Nannochloropsis oceanica)
ATGTGGGAGGCGAATTCCCGGTTACTGGCTGTTGGAGGCTTTGCCCCCTC
CGCGGAACTCCGCGACAACAACCAGGTCTCTACCTTGCTCTCCCTGTGGG
TAAGATCTTGTCTTGAGGAGTACAACCTTGCTTCCGGAGATTTTGTGGGC
TCCGTGACAGACCATGGCAGCGATGTGAAGCGGTGCTGTACGGCCGGAGA
TTGCTTGGATTTCAAACATGAGTGGTGCAGCCCACATATGTTCAGCCGTG
CGATTGTGGAAGGGGTGGAATATTCAGAGGCAAGGGAAGATACGGCAAAC
GAGAATGGGAGGAAACTGCTAATGGAGGTGCGGAAGATGATCACACATAT
CTCTAAGAGAGGCAGAGCTCTGATGAAAGCTGTGTTTGACGAGTCGCAGA
CGGAATTGTTCGGCAAGTCCCTCAAGCTCACCAACATGGCCATGCAGCGG
TGGTCATCTACTGAGCGAACGCTCTATCTTGCGCTTGGAGATTGGAGAGC
AATCCTGAGGACATATCATGTGCGGAGCAAGCGGGTGCAGCTCGGGAAAA
AGAGGCAGGAATTGGTGGAACTATATAGCCTGTTTTACAGGGTCAATCTC
CTTTTGAAGGACTCGCAGGGCTCCTCTGTCACGTCAGGGCCCCTCCTCGT
CATGCGTGTCATCCTCCTCCTACAAAACGAGCTTGCTTTGGACAAGCCTC
TAATTGTGATTGACCCTGCCGTCGTGGAGAAAAAGGATGAGGCAGTGGAC
CTAGAGGAACGAGGAGCGGGGCCTGTGCTGCCTCGCGGTCACACGGCTGT
ACGCGCAGCTGCTCTGACGGATGTTGGAACAAAGAGCAGGAGGCTGCTGC
GTGAGAGCATTATCAAGCGTTTTGTGAAGAGCAGGTACCATTCCACCGGA
GATTGTGGAAAGCCCTCCTACCTCGTTGATGCAGCGGCTTTGGCACACCC
TGGCCTAATGAAGATGAAGTGGGTAGATAAGATGGCGGACTCCAAAGGGC
ACGCTACGCTGGTGGAAAGCAAGATCGAAGACGTAATCATTGTTATGTTG
GAGGAATTGCATTTCAACAAATGGTTGGGGGTGGGTGGAGGTGAGGAATT
TGAGGATGAGAACATTTCCAGCCAACCGCCGAAGAGGACCTTGCCTGAAT
ACAGAAAGGCGACTACCAGTGACATCGCTGCCATGATGTCTGACGATGAG
GATGACTGTCAGGCTGTAGCGTCTGGCCCCATGACCTCGTACGCATGGGC
TAGGGCGAAACTGGTTGAGTTTTTTGATTGGTGCGGGGGGAAGGGCGACA
AAGTAGACATTGCGAAAAAAATGCAGTGGAAAGACATCTCCAGCTGGTGG
CTCATGACAGGGAGCGGCATGTTCCCTGAACTTGCTCAGATCTTTCAAGC
TCTCCTCTCCATGCCTCGTGGTGCCGCGTCGCTCGGGCGAGACTTTAGCA
TTGCGAGCAACGTGTTGACCGTACACTGCGCTCAGCTAGATCAGGCATTT
GTGGAGATGACCATGCTTCAAAACATGAACATAGACAAAATTCCGCCCCT
CTCCGACATCCGGGAGCTGACAGTTACGGAGGCGAAAGAAGTAATGCCAC
GACGACTGCGAAACAAGGATGATTTTCAGAAGTTTCTTCATTTGGATGAG
TCTGTGACGAAGGAGGGGGAGAAGGAAGACGACGCCGAGGCCGAGGAGAA
TGATAAACAGGCGACGGAAACAACGAGGTATGGAGCCAATGATGGTGCAG
ATGATGATGAGATTGACGACGGTTATGATGATAATGATGATGACGATGAT
GGTGATGCGTAA
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Coding sequence (CDS) from alignment at chr18:65824..67635-

>NO18G00160.1 ID=NO18G00160.1|Name=NO18G00160.1|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at chr18:65824..67635- (Nannochloropsis oceanica)
ATGTGGGAGGCGAATTCCCGGTTACTGGCTGTTGGAGGCTTTGCCCCCTC
CGCGGAACTCCGCGACAACAACCAGGTCTCTACCTTGCTCTCCCTGTGGG
TAAGATCTTGTCTTGAGGAGTACAACCTTGCTTCCGGAGATTTTGTGGGC
TCCGTGACAGACCATGGCAGCGATGTGAAGCGGTGCTGTACGGCCGGAGA
TTGCTTGGATTTCAAACATGAGTGGTGCAGCCCACATATGTTCAGCCGTG
CGATTGTGGAAGGGGTGGAATATTCAGAGGCAAGGGAAGATACGGCAAAC
GAGAATGGGAGGAAACTGCTAATGGAGGTGCGGAAGATGATCACACATAT
CTCTAAGAGAGGCAGAGCTCTGATGAAAGCTGTGTTTGACGAGTCGCAGA
CGGAATTGTTCGGCAAGTCCCTCAAGCTCACCAACATGGCCATGCAGCGG
TGGTCATCTACTGAGCGAACGCTCTATCTTGCGCTTGGAGATTGGAGAGC
AATCCTGAGGACATATCATGTGCGGAGCAAGCGGGTGCAGCTCGGGAAAA
AGAGGCAGGAATTGGTGGAACTATATAGCCTGTTTTACAGGGTCAATCTC
CTTTTGAAGGACTCGCAGGGCTCCTCTGTCACGTCAGGGCCCCTCCTCGT
CATGCGTGTCATCCTCCTCCTACAAAACGAGCTTGCTTTGGACAAGCCTC
TAATTGTGATTGACCCTGCCGTCGTGGAGAAAAAGGATGAGGCAGTGGAC
CTAGAGGAACGAGGAGCGGGGCCTGTGCTGCCTCGCGGTCACACGGCTGT
ACGCGCAGCTGCTCTGACGGATGTTGGAACAAAGAGCAGGAGGCTGCTGC
GTGAGAGCATTATCAAGCGTTTTGTGAAGAGCAGGTACCATTCCACCGGA
GATTGTGGAAAGCCCTCCTACCTCGTTGATGCAGCGGCTTTGGCACACCC
TGGCCTAATGAAGATGAAGTGGGTAGATAAGATGGCGGACTCCAAAGGGC
ACGCTACGCTGGTGGAAAGCAAGATCGAAGACGTAATCATTGTTATGTTG
GAGGAATTGCATTTCAACAAATGGTTGGGGGTGGGTGGAGGTGAGGAATT
TGAGGATGAGAACATTTCCAGCCAACCGCCGAAGAGGACCTTGCCTGAAT
ACAGAAAGGCGACTACCAGTGACATCGCTGCCATGATGTCTGACGATGAG
GATGACTGTCAGGCTGTAGCGTCTGGCCCCATGACCTCGTACGCATGGGC
TAGGGCGAAACTGGTTGAGTTTTTTGATTGGTGCGGGGGGAAGGGCGACA
AAGTAGACATTGCGAAAAAAATGCAGTGGAAAGACATCTCCAGCTGGTGG
CTCATGACAGGGAGCGGCATGTTCCCTGAACTTGCTCAGATCTTTCAAGC
TCTCCTCTCCATGCCTCGTGGTGCCGCGTCGCTCGGGCGAGACTTTAGCA
TTGCGAGCAACGTGTTGACCGTACACTGCGCTCAGCTAGATCAGGCATTT
GTGGAGATGACCATGCTTCAAAACATGAACATAGACAAAATTCCGCCCCT
CTCCGACATCCGGGAGCTGACAGTTACGGAGGCGAAAGAAGTAATGCCAC
GACGACTGCGAAACAAGGATGATTTTCAGAAGTTTCTTCATTTGGATGAG
TCTGTGACGAAGGAGGGGGAGAAGGAAGACGACGCCGAGGCCGAGGAGAA
TGATAAACAGGCGACGGAAACAACGAGGTATGGAGCCAATGATGGTGCAG
ATGATGATGAGATTGACGACGGTTATGATGATAATGATGATGACGATGAT
GGTGATGCGTAA
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Synonyms
Publications