NO17G02940, NO17G02940 (gene) Nannochloropsis oceanica

Overview
NameNO17G02940
Unique NameNO17G02940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4012
Alignment locationchr17:862621..866632 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:862621..866632 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO17G02940 vs. NCBI_GenBank
Match: EWM24107.1 (hypothetical protein Naga_100286g4 [Nannochloropsis gaditana])

HSP 1 Score: 302.4 bits (773), Expect = 1.300e-78
Identity = 155/255 (60.78%), Postives = 191/255 (74.90%), Query Frame = 0 
Query:    1 MARLFRSAVALAIFAFAGLATAESPMRRRQQMT---TGALKDM----LPAYKPDAELTMMQDAWRNGLDVMSVFTSNFQSEGMKAVLDNAEIQHTIMEKLPLLAAFDGFKQITGRRLDAEGTKAGFAAGINAMMTALPDMLKTMKDPTISTRVLSELLADDADGFSEVFNDASSGDKEAMAKVEAAVNEKLFPGINTSALKAVSEGNPLKSLLDNKEVMRLIDSDPVTSMALRANSPEEMDEFVKNYAANRRFRF 249
            MAR+ RS   +A+  FA LA AESPMRR Q +T   +GA KD+    LPAYKPDAELTMMQD W+NGLD+M +F ++F S GMKA+LD+ E QH IME LPLLAAFDGFK+ITGRRLD  GT AGF AG+N+++  LPDMLKTMKDP+ISTR LSELLA+DA+  SE F  AS+GD  AM  V  A+N+KL+PG+NT  LK VS  +PL  +  N E+MRLI+ DP+ + AL    P ++D FVK+YAA+RRFRF
Sbjct:    1 MARIMRSVATMAMLTFASLAVAESPMRRMQSLTGVLSGAAKDVMEDTLPAYKPDAELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAALTERDPAKLDAFVKDYAASRRFRF 255
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BLAST of NO17G02940 vs. NCBI_GenBank
Match: XP_005853961.1 (hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526] >EKU22395.1 hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 300.8 bits (769), Expect = 3.900e-78
Identity = 154/255 (60.39%), Postives = 190/255 (74.51%), Query Frame = 0 
Query:    1 MARLFRSAVALAIFAFAGLATAESPMRRRQQMT---TGALKDM----LPAYKPDAELTMMQDAWRNGLDVMSVFTSNFQSEGMKAVLDNAEIQHTIMEKLPLLAAFDGFKQITGRRLDAEGTKAGFAAGINAMMTALPDMLKTMKDPTISTRVLSELLADDADGFSEVFNDASSGDKEAMAKVEAAVNEKLFPGINTSALKAVSEGNPLKSLLDNKEVMRLIDSDPVTSMALRANSPEEMDEFVKNYAANRRFRF 249
            MAR+ RS   +A+  FA LA AESPMRR Q +T   +GA KD+    LPAYKPD ELTMMQD W+NGLD+M +F ++F S GMKA+LD+ E QH IME LPLLAAFDGFK+ITGRRLD  GT AGF AG+N+++  LPDMLKTMKDP+ISTR LSELLA+DA+  SE F  AS+GD  AM  V  A+N+KL+PG+NT  LK VS  +PL  +  N E+MRLI+ DP+ + AL    P ++D FVK+YAA+RRFRF
Sbjct:    1 MARIMRSVATMAMLTFASLAVAESPMRRMQSLTGVLSGAAKDVMEDTLPAYKPDGELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAALTERDPAKLDAFVKDYAASRRFRF 255
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BLAST of NO17G02940 vs. NCBI_GenBank
Match: EWM25436.1 (hypothetical protein Naga_100005g87 [Nannochloropsis gaditana])

HSP 1 Score: 122.1 bits (305), Expect = 2.500e-24
Identity = 68/205 (33.17%), Postives = 112/205 (54.63%), Query Frame = 0 
Query:   27 RRRQQMTTGALKDMLPAYKPDAELTMMQDAWRNGLDVMSVFTSNFQSEGMKAVLDNAEIQHTIMEKLPLLAAFDGFKQITGRRLDAEGTKAGFAAGINAMMTALPDMLKTMKDPTISTRVLSELLADDADGFSEVFNDASSGDKEAMAKVEAAVNEKLFPGINTSALKAVSEGNPLKSLLDNKEVMRLIDSDPVTSMALRANSPE 232
            RR QQ  +G  + +    +P+ ++  +Q   +  +D + +FT   +S+  +AVL N EIQH I++++PLLAAFDGF+QITGRRL A  T  GFA G+  ++         +KDP  +   ++++ AD       +F  A  GD  A+ +++   N+  FPG++   L+ V   +  + LL   E+MR ID +   S   R++  E
Sbjct:  104 RRLQQAASGFDQPL----RPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQITGRRLSARETMEGFAIGVQNVIDFAKVAFIKVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFIDRNEFASNFFRSDIKE 304
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BLAST of NO17G02940 vs. NCBI_GenBank
Match: EWM23494.1 (hypothetical protein Naga_100198g11 [Nannochloropsis gaditana])

HSP 1 Score: 107.5 bits (267), Expect = 6.200e-20
Identity = 58/207 (28.02%), Postives = 103/207 (49.76%), Query Frame = 0 
Query:   22 AESPMRRRQQMTTGALKDMLPAYKPDAELTMMQDAWRNGLDVMSVFTSNFQSEGMKAVLDNAEIQHTIMEKLPLLAAFDGFKQITGRRLDAEGTKAGFAAGINAMMTALPDMLKTMKDPTISTRVLSELLADDADGFSEVFNDASSGDKEAMAKVEAAVNEKLFPGINTSALKAVSEGNPLKSLLDNKEVMRLIDSDPVTSMALRAN 229
            A    + R +    +L+ +        +    Q   ++G+D + +F + F+S+  +++L+N EIQH I+E +P+L A  GF++  GRRL  + T AGF+ G+  ++       K   +PT+    ++EL   D     ++F  AS  D+ ++ +++      L+PG++   L+ V        LLD  E+ R ID DP  S   R N
Sbjct:  104 AGEKFKERTEEVKSSLQGLFDPVGSPGKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHALNPTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYISRVFRMN 310
[Close]
BLAST of NO17G02940 vs. NCBI_GenBank
Match: EWM22205.1 (hypothetical protein Naga_100291g6 [Nannochloropsis gaditana])

HSP 1 Score: 79.7 bits (195), Expect = 1.400e-11
Identity = 47/176 (26.70%), Postives = 87/176 (49.43%), Query Frame = 0 
Query:   45 KPDAELTMMQDAWRNGLDVMSVFTSNFQSEGMKAVLDNAEIQHTIMEKLPLLAAFDGFKQI-TGRRLDAEGTKAGFAAGINAMMTALPD-MLKTMKDPTISTRVLSELLADDADGFSEVFNDASSGDKEAMAKVEAAVNEKLFPGINTSALKAVSEGNPLKSLLDNKEVMRLIDSD 219
            KP +    + +  +N  + + VF     ++G KA+LDN +IQH +++  PLL A  GF  I   RRL AE TK  F+ G+N ++    D     + +P   +  L+++ A    G   +F  A +G++ A+ +++     + + G++  A + +S+ +         E+M  I  D
Sbjct:   70 KPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKD 245
[Close]
BLAST of NO17G02940 vs. NCBI_GenBank
Match: XP_005854240.1 (hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526] >EKU22120.1 hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 68.2 bits (165), Expect = 4.200e-8
Identity = 34/115 (29.57%), Postives = 63/115 (54.78%), Query Frame = 0 
Query:   22 AESPMRRRQQMTTGALKDMLPAYKPDAELTMMQDAWRNGLDVMSVFTSNFQSEGMKAVLDNAEIQHTIMEKLPLLAAFDGFKQITGRRLDAEGTKAGFAAGINAMMTALPDMLKT 137
            A    + R +    +L+ +        +    Q   ++G+D + +F + F+S+  +++L+N EIQH I+E +P+L A  GF++  GRRL  + T AGF+ G+  ++    +M KT
Sbjct:   50 AGEKFKERTEEVKSSLQGLFDPVGSPGKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLL----EMFKT 160
The following BLAST results are available for this feature:
BLAST of NO17G02940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM24107.11.300e-7860.78hypothetical protein Naga_100286g4 [Nannochloropsi... [more]
XP_005853961.13.900e-7860.39hypothetical protein NGA_0461700 [Nannochloropsis ... [more]
EWM25436.12.500e-2433.17hypothetical protein Naga_100005g87 [Nannochlorops... [more]
EWM23494.16.200e-2028.02hypothetical protein Naga_100198g11 [Nannochlorops... [more]
EWM22205.11.400e-1126.70hypothetical protein Naga_100291g6 [Nannochloropsi... [more]
XP_005854240.14.200e-829.57hypothetical protein NGA_0024302 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008453NSK008453Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100286g4gene6360Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02940.1NO17G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G02940.2NO17G02940.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G02940.3NO17G02940.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02940.1NO17G02940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G02940.2NO17G02940.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G02940.3NO17G02940.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02940 ID=NO17G02940|Name=NO17G02940|organism=Nannochloropsis oceanica|type=gene|length=4012bp
CCCGAGCCACACCCAAACGACCGCCTTTGGCAGTTATTACTCCCAACGCC
TCTCACGAGCACCGTACTGCTCCCAAAACTCGTTCGTGCTCTACTCCTCC
CGAAATAAAAAACACCCATAAAAATGGGGCTTTATGTCTTGATCCTCTTC
CCCCTGCCTCGCTTTGTCATACCTATTTTTGGGGGTCCATGCCCAGTTCT
TCTTGGTTGCATTGACAAGAAACGCCTGGTTTGGCAGGGCTTGCTGAGAA
CATGAAGTTATGGGCCTACCTAGGCATTCTTCTTTGCGCATCCGGCGCGC
TTTCTCAGGGGCGGTCATTGTTGGGCGCGAGATTACTGCTCGCGGAGAGA
GGCTCGCGGAGTTGTGCTTGGGCTTGGCCTCTTCCTTCATTTTAGAGGCT
CCTCGCAGCTATCAATCCAAAGATGGTATTTGTCTCTCGAGCATCCTCCC
CACTCCCCTTTGCTTGCTCCCTCTCTCCAAAGGTGCAGCACACTGATCGG
AGGGCTTAGCTCACCAAGCGATTGGTAGCTGTTGACACTGCCTACCTATC
CGACTGTGTTTTGGAGGAAAATTAGCACTCATAGAGCCGCCAGGGAGATT
AGGGCGGCTCCACACAACgtaagctatctgtcacaagtgtcttgccctta
ctggcaagccgtcgtgatagcagccatgtttcttgtcaatgaatgggctc
tggggaggctaggccatacacactcagacacacatcctcccataccgggt
ctcacccaactccctttcgttccacccctccgcagCAAGACACGCTACCC
ATCATCCACAAGCTACATATACAATGGCTCGTCTGTTTCGTTCCGCGGTC
GCTCTGGCCATATTCGCCTTTGCTGGCCTCGCCACTGCCGAGAGCCCCAT
GCGCCGCAGGCAGgtaaagaaaaagagggacaaggaggaagggaatagga
acggaggaagatagaaatgcatgtcattaaagacgatttgttttgacacg
ctggcgtcatcaggaactgtattaaatcaggcgttatttgggtgagatgc
atatgtacactcaccgaaatcttccttctccctctctgccctcctctttc
ctgcctgctcgttcgctcgtctaagacattcatcaaaaacgggctcttct
ctcaggtgccgtgccctagaaggacggacatccatcgcaccgacaatccc
attcactcctcttcctccgtccctcccattctctcttccatagCAAATGA
CCACCGGTGCCCTGAAGGACATGCTCCCCGCCTACAAGCCCGACGCCGAG
CTCACCATGATGCAGgtaggaggatgacgtagaaatgcagtcggaaggtg
aaacgatatcctgtctgtggagagccctgtcaaacatcgccttattattg
aatgaatgtagaaaagctcacgcctgtcgtttctctccacctcccttctt
tcatacgtagGACGCCTGGCGCAACGGCCTGGATGTCATGTCCGTGTTCA
CGAGCAACTTCCAGTCGGAGGGGATGAAGgtaagtggaacggaggtgggt
cctcttctagaccgcgccgagattcggcaacacctctctcatgaaatgac
ttcctccctccgtcgccttagGCCGTCCTCGACAACGCCGAGATCCAGCA
CACGATCATGGAGAAGCTGCCCCTCCTCGCGGCCTTCGACGGTTTCAAGC
AGATCACCGGCCGCCGCCTTGATGCCGAAGGGgtaaggaaatagaatgag
ggaggaaaacgttctggtctgattccttctcaagaaatatacatgcgtcc
agcttacacctaccctccctcccatccctccctcctccctccctccccta
gACCAAGGCGGGCTTTGCCGCTGGCATCAATGCGATGATGACTGCCTTGC
CTGACATGCTCAAGACCATGAAGGACCCCACCATCTCCACCCGCGTCTTG
TCCGAGTTGCTGGCCGACGACGCCGACGGCTTCAGTgtatggagggaggg
agggaggaaggggtgacacgaatcttgagagatttctagttctactggcc
gtggctgcctctcccctttgcgagagaagatgttgatttcttgatgtttt
ggactctttggtcttttccgtaggagctggataccacaagtcccttgtaa
atgtatggacgccacccttttatgtgtgtgttcatctctcttttttatcc
tctgccattcctgctttttctcctcacagGAGGTCTTCAACGACGCCTCC
TCGGGCGACAAGGAGGCCATGGCCAAGGTCGAGGCTGCGGTCAACGAGAA
GCTCTTCCCCGGCATTAACACCAGCGCGCTCAAGgtaagcaacaaaacct
tcagacacgggggagggagggagaaagttgtgtcgactcatgtttccaat
acccgttgaatatcgtcgaggcctgaggcatgaaatgaaagtacagaaag
accgtgtgcgctgtgtgtatggggaggcattacctttatcatcactactc
tcgtcctttttgcaatgaagaaaataggatgaagaaagcttgttctagct
accccgtcccttacgcctctcattcctccgccttattccttctcccttcc
caccacagGCCGTGTCCGAAGGCAACCCCCTCAAGTCCCTTCTCGACAAC
AAGGAGgtacgaggaagagaggaagaaaagaaggggaactggagaagact
gtctttattttccatttaatcactcaaaacaatcacgtgctgatccctcc
ctccctccctcttcctcctcccagGTCATGCGCCTCATCGACTCTGATCC
AGTCACGTCCATGGCCCTCCGCGCGAACTCCCCCGAAGAGATGGATGAAT
TTGTAAAGAATTACGCCGCCAACCGCCGCTTCCGATTCTgtgcgtagtct
tttttcctgcccaccttcctcctctccctcccttccttttcttttcggct
tgtctaccgtcggctcacctgccctccatgtctttctcgctctttccctc
caaccacagAAACTCGTGAACGAGGGCCACGAGAATGGGAAGAGATGGAG
GGAGAGATGGCTCTGTGATGGAGCGTGCCGATGGACGGCACCCACTCCTG
TGTATTTTATGAGGGCAAGCAGGAAGGGAGGGAGGGAAAGACAAGACCAT
GTACCATCATTTCCTAACGTTTTGATTTGTACGTTCGTGGATGGAGGGTG
CTCGGACGGGGGGAGGGAGGATGAGGCGGAGGGCTGGCTAATTGTGACGT
GTCACTCACTACTCAAACAGTACGATTACGATGGAAAGGCGACCGGACGG
AGGGAGGGAGGGACGGAGAGAAGAGGAGCTATGGACCATGACAGCGGGAA
GGATGGAGGGAGGGACGGAGGATTGCGTCTCTAGTAGGCGCATCAACGCG
TGCTCTCCCTTTTCCTCCTCTGCCTCTTTCCGTTTCAGAATCTCTTGTCC
TGCGCTTCTTTATGTGATAAATAAATTTCGATACAATTACGTACATACGT
CTATATATTTATAATGTGCGCTCAGGGAGGGAGGGAGGGAGAAAGTGTCC
GCTGGCCTCTTGCTCGGTCTCCTTGTGAGACGGGAGGGAGGTCGGCGTGT
CGGCCACTGGCGAAGGCGAAAGAGGGAGGAGTAAGACGGAAAGGATCAAA
GAAACAAGGGATAGTGAGAGTACACACACACACGCGCGCTGATTTCTATA
GTGGCTCTGGCTGCGAGAAAACGACACGGTCTGTCGATCTTTGATTTGTC
ACAGCCGTTGTTGCTGCTGCGACTTTTTCCTAATTCCTTCCGGAACGGCC
TCTGGGGCCTGTTGGGGTTTCTTTTTCTTTAAGGGGGAGGCTCCTTCTCA
ATAAGGCTTAAAGGCGTGAATGGAAAATATCTTCCTTCTTCCCACCTCCT
CACTCTTCCCTCCATCCTCCTACTCTCCCTCCCCCTCTGCTGTGGGGGAT
ACGAAATGTTACCTTGACTCAATGGAATGTGTAGCGCTTGTTGATCGCCT
CAGTCACGTCCC
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protein sequence of NO17G02940.1

>NO17G02940.1-protein ID=NO17G02940.1-protein|Name=NO17G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MARLFRSAVALAIFAFAGLATAESPMRRRQTFIKNGLFSQQMTTGALKDM
LPAYKPDAELTMMQDAWRNGLDVMSVFTSNFQSEGMKAVLDNAEIQHTIM
EKLPLLAAFDGFKQITGRRLDAEGTKAGFAAGINAMMTALPDMLKTMKDP
TISTRVLSELLADDADGFSEVFNDASSGDKEAMAKVEAAVNEKLFPGINT
SALKAVSEGNPLKSLLDNKEVMRLIDSDPVTSMALRANSPEEMDEFVKNY
AANRRFRF*
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protein sequence of NO17G02940.2

>NO17G02940.2-protein ID=NO17G02940.2-protein|Name=NO17G02940.2|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MARLFRSAVALAIFAFAGLATAESPMRRRQQMTTGALKDMLPAYKPDAEL
TMMQDAWRNGLDVMSVFTSNFQSEGMKAVLDNAEIQHTIMEKLPLLAAFD
GFKQITGRRLDAEGTKAGFAAGINAMMTALPDMLKTMKDPTISTRVLSEL
LADDADGFSEVFNDASSGDKEAMAKVEAAVNEKLFPGINTSALKAVSEGN
PLKSLLDNKEVMRLIDSDPVTSMALRANSPEEMDEFVKNYAANRRFRF*
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protein sequence of NO17G02940.3

>NO17G02940.3-protein ID=NO17G02940.3-protein|Name=NO17G02940.3|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MARLFRSAVALAIFAFAGLATAESPMRRRQQMTTGALKDMLPAYKPDAEL
TMMQDAWRNGLDVMSVFTSNFQSEGMKAVLDNAEIQHTIMEKLPLLAAFD
GFKQITGRRLDAEGTKAGFAAGINAMMTALPDMLKTMKDPTISTRVLSEL
LADDADGFSEVFNDASSGDKEAMAKVEAAVNEKLFPGINTSALKAVSEGN
PLKSLLDNKEVMRLIDSDPVTSMALRANSPEEMDEFVKNYAANRRFRF*
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Synonyms
Publications