NO17G02940.1, NO17G02940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02940.1
Unique NameNO17G02940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2434
Alignment locationchr17:862621..866632 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:862621..866632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02940.1 vs.
Match: EWM24107.1 (hypothetical protein Naga_100286g4 [Nannochloropsis gaditana])

HSP 1 Score: 299.3 bits (765), Expect = 1.200e-77
Identity = 153/258 (59.30%), Postives = 190/258 (73.64%), Query Frame = 0 
Query:    1 MARLFRSAVALAIFAFAGLATAESPMRRRQTFIKNGLFSQQMTTGALKDMLPAYKPDAELTMMQDAWRNGLDVMSVFTSNFQSEGMKAVLDNAEIQHTIMEKLPLLAAFDGFKQITGRRLDAEGTKAGFAAGINAMMTALPDMLKTMKDPTISTRVLSELLADDADGFSEVFNDASSGDKEAMAKVEAAVNEKLFPGINTSALKAVSEGNPLKSLLDNKEVMRLIDSDPVTSMALRANSPEEMDEFVKNYAANRRFRF 259
            MAR+ RS   +A+  FA LA AESPMRR Q+    G+ S       ++D LPAYKPDAELTMMQD W+NGLD+M +F ++F S GMKA+LD+ E QH IME LPLLAAFDGFK+ITGRRLD  GT AGF AG+N+++  LPDMLKTMKDP+ISTR LSELLA+DA+  SE F  AS+GD  AM  V  A+N+KL+PG+NT  LK VS  +PL  +  N E+MRLI+ DP+ + AL    P ++D FVK+YAA+RRFRF
Sbjct:    1 MARIMRSVATMAMLTFASLAVAESPMRRMQSL--TGVLSGA-AKDVMEDTLPAYKPDAELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAALTERDPAKLDAFVKDYAASRRFRF 255
The following BLAST results are available for this feature:
BLAST of NO17G02940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24107.11.200e-7759.30hypothetical protein Naga_100286g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02940NO17G02940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02940.1NO17G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02940.1.cds1NO17G02940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02940.1.cds2NO17G02940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02940.1.cds3NO17G02940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02940.1.cds4NO17G02940.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02940.1.cds5NO17G02940.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02940.1.cds6NO17G02940.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02940.1.cds7NO17G02940.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02940.1.cds8NO17G02940.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02940.1.cds9NO17G02940.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02940.1.cds10NO17G02940.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02940.1 ID=NO17G02940.1|Name=NO17G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2434bp
CCCGAGCCACACCCAAACGACCGCCTTTGGCAGTTATTACTCCCAACGCC
TCTCACGAGCACCGTACTGCTCCCAAAACTCGTTCGTGCTCTACTCCTCC
CGAAATAAAAAACACCCATAAAAATGGGGCTTTATGTCTTGATCCTCTTC
CCCCTGCCTCGCTTTGTCATACCTATTTTTGGGGGTCCATGCCCAGTTCT
TCTTGGTTGCATTGACAAGAAACGCCTGGTTTGGCAGGGCTTGCTGAGAA
CATGAAGTTATGGGCCTACCTAGGCATTCTTCTTTGCGCATCCGGCGCGC
TTTCTCAGGGGCGGTCATTGTTGGGCGCGAGATTACTGCTCGCGGAGAGA
GGCTCGCGGAGTTGTGCTTGGGCTTGGCCTCTTCCTTCATTTTAGAGGCT
CCTCGCAGCTATCAATCCAAAGATGGTATTTGTCTCTCGAGCATCCTCCC
CACTCCCCTTTGCTTGCTCCCTCTCTCCAAAGGTGCAGCACACTGATCGG
AGGGCTTAGCTCACCAAGCGATTGGTAGCTGTTGACACTGCCTACCTATC
CGACTGTGTTTTGGAGGAAAATTAGCACTCATAGAGCCGCCAGGGAGATT
AGGGCGGCTCCACACAACCAAGACACGCTACCCATCATCCACAAGCTACA
TATACAATGGCTCGTCTGTTTCGTTCCGCGGTCGCTCTGGCCATATTCGC
CTTTGCTGGCCTCGCCACTGCCGAGAGCCCCATGCGCCGCAGGCAGACAT
TCATCAAAAACGGGCTCTTCTCTCAGCAAATGACCACCGGTGCCCTGAAG
GACATGCTCCCCGCCTACAAGCCCGACGCCGAGCTCACCATGATGCAGGA
CGCCTGGCGCAACGGCCTGGATGTCATGTCCGTGTTCACGAGCAACTTCC
AGTCGGAGGGGATGAAGGCCGTCCTCGACAACGCCGAGATCCAGCACACG
ATCATGGAGAAGCTGCCCCTCCTCGCGGCCTTCGACGGTTTCAAGCAGAT
CACCGGCCGCCGCCTTGATGCCGAAGGGACCAAGGCGGGCTTTGCCGCTG
GCATCAATGCGATGATGACTGCCTTGCCTGACATGCTCAAGACCATGAAG
GACCCCACCATCTCCACCCGCGTCTTGTCCGAGTTGCTGGCCGACGACGC
CGACGGCTTCAGTGAGGTCTTCAACGACGCCTCCTCGGGCGACAAGGAGG
CCATGGCCAAGGTCGAGGCTGCGGTCAACGAGAAGCTCTTCCCCGGCATT
AACACCAGCGCGCTCAAGGCCGTGTCCGAAGGCAACCCCCTCAAGTCCCT
TCTCGACAACAAGGAGGTCATGCGCCTCATCGACTCTGATCCAGTCACGT
CCATGGCCCTCCGCGCGAACTCCCCCGAAGAGATGGATGAATTTGTAAAG
AATTACGCCGCCAACCGCCGCTTCCGATTCTAAACTCGTGAACGAGGGCC
ACGAGAATGGGAAGAGATGGAGGGAGAGATGGCTCTGTGATGGAGCGTGC
CGATGGACGGCACCCACTCCTGTGTATTTTATGAGGGCAAGCAGGAAGGG
AGGGAGGGAAAGACAAGACCATGTACCATCATTTCCTAACGTTTTGATTT
GTACGTTCGTGGATGGAGGGTGCTCGGACGGGGGGAGGGAGGATGAGGCG
GAGGGCTGGCTAATTGTGACGTGTCACTCACTACTCAAACAGTACGATTA
CGATGGAAAGGCGACCGGACGGAGGGAGGGAGGGACGGAGAGAAGAGGAG
CTATGGACCATGACAGCGGGAAGGATGGAGGGAGGGACGGAGGATTGCGT
CTCTAGTAGGCGCATCAACGCGTGCTCTCCCTTTTCCTCCTCTGCCTCTT
TCCGTTTCAGAATCTCTTGTCCTGCGCTTCTTTATGTGATAAATAAATTT
CGATACAATTACGTACATACGTCTATATATTTATAATGTGCGCTCAGGGA
GGGAGGGAGGGAGAAAGTGTCCGCTGGCCTCTTGCTCGGTCTCCTTGTGA
GACGGGAGGGAGGTCGGCGTGTCGGCCACTGGCGAAGGCGAAAGAGGGAG
GAGTAAGACGGAAAGGATCAAAGAAACAAGGGATAGTGAGAGTACACACA
CACACGCGCGCTGATTTCTATAGTGGCTCTGGCTGCGAGAAAACGACACG
GTCTGTCGATCTTTGATTTGTCACAGCCGTTGTTGCTGCTGCGACTTTTT
CCTAATTCCTTCCGGAACGGCCTCTGGGGCCTGTTGGGGTTTCTTTTTCT
TTAAGGGGGAGGCTCCTTCTCAATAAGGCTTAAAGGCGTGAATGGAAAAT
ATCTTCCTTCTTCCCACCTCCTCACTCTTCCCTCCATCCTCCTACTCTCC
CTCCCCCTCTGCTGTGGGGGATACGAAATGTTACCTTGACTCAATGGAAT
GTGTAGCGCTTGTTGATCGCCTCAGTCACGTCCC
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protein sequence of NO17G02940.1

>NO17G02940.1-protein ID=NO17G02940.1-protein|Name=NO17G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MARLFRSAVALAIFAFAGLATAESPMRRRQTFIKNGLFSQQMTTGALKDM
LPAYKPDAELTMMQDAWRNGLDVMSVFTSNFQSEGMKAVLDNAEIQHTIM
EKLPLLAAFDGFKQITGRRLDAEGTKAGFAAGINAMMTALPDMLKTMKDP
TISTRVLSELLADDADGFSEVFNDASSGDKEAMAKVEAAVNEKLFPGINT
SALKAVSEGNPLKSLLDNKEVMRLIDSDPVTSMALRANSPEEMDEFVKNY
AANRRFRF*
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mRNA from alignment at chr17:862621..866632+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02940.1 ID=NO17G02940.1|Name=NO17G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=4012bp|location=Sequence derived from alignment at chr17:862621..866632+ (Nannochloropsis oceanica)
CCCGAGCCACACCCAAACGACCGCCTTTGGCAGTTATTACTCCCAACGCC
TCTCACGAGCACCGTACTGCTCCCAAAACTCGTTCGTGCTCTACTCCTCC
CGAAATAAAAAACACCCATAAAAATGGGGCTTTATGTCTTGATCCTCTTC
CCCCTGCCTCGCTTTGTCATACCTATTTTTGGGGGTCCATGCCCAGTTCT
TCTTGGTTGCATTGACAAGAAACGCCTGGTTTGGCAGGGCTTGCTGAGAA
CATGAAGTTATGGGCCTACCTAGGCATTCTTCTTTGCGCATCCGGCGCGC
TTTCTCAGGGGCGGTCATTGTTGGGCGCGAGATTACTGCTCGCGGAGAGA
GGCTCGCGGAGTTGTGCTTGGGCTTGGCCTCTTCCTTCATTTTAGAGGCT
CCTCGCAGCTATCAATCCAAAGATGGTATTTGTCTCTCGAGCATCCTCCC
CACTCCCCTTTGCTTGCTCCCTCTCTCCAAAGGTGCAGCACACTGATCGG
AGGGCTTAGCTCACCAAGCGATTGGTAGCTGTTGACACTGCCTACCTATC
CGACTGTGTTTTGGAGGAAAATTAGCACTCATAGAGCCGCCAGGGAGATT
AGGGCGGCTCCACACAACGTAAGCTATCTGTCACAAGTGTCTTGCCCTTA
CTGGCAAGCCGTCGTGATAGCAGCCATGTTTCTTGTCAATGAATGGGCTC
TGGGGAGGCTAGGCCATACACACTCAGACACACATCCTCCCATACCGGGT
CTCACCCAACTCCCTTTCGTTCCACCCCTCCGCAGCAAGACACGCTACCC
ATCATCCACAAGCTACATATACAATGGCTCGTCTGTTTCGTTCCGCGGTC
GCTCTGGCCATATTCGCCTTTGCTGGCCTCGCCACTGCCGAGAGCCCCAT
GCGCCGCAGGCAGGTAAAGAAAAAGAGGGACAAGGAGGAAGGGAATAGGA
ACGGAGGAAGATAGAAATGCATGTCATTAAAGACGATTTGTTTTGACACG
CTGGCGTCATCAGGAACTGTATTAAATCAGGCGTTATTTGGGTGAGATGC
ATATGTACACTCACCGAAATCTTCCTTCTCCCTCTCTGCCCTCCTCTTTC
CTGCCTGCTCGTTCGCTCGTCTAAGACATTCATCAAAAACGGGCTCTTCT
CTCAGGTGCCGTGCCCTAGAAGGACGGACATCCATCGCACCGACAATCCC
ATTCACTCCTCTTCCTCCGTCCCTCCCATTCTCTCTTCCATAGCAAATGA
CCACCGGTGCCCTGAAGGACATGCTCCCCGCCTACAAGCCCGACGCCGAG
CTCACCATGATGCAGGTAGGAGGATGACGTAGAAATGCAGTCGGAAGGTG
AAACGATATCCTGTCTGTGGAGAGCCCTGTCAAACATCGCCTTATTATTG
AATGAATGTAGAAAAGCTCACGCCTGTCGTTTCTCTCCACCTCCCTTCTT
TCATACGTAGGACGCCTGGCGCAACGGCCTGGATGTCATGTCCGTGTTCA
CGAGCAACTTCCAGTCGGAGGGGATGAAGGTAAGTGGAACGGAGGTGGGT
CCTCTTCTAGACCGCGCCGAGATTCGGCAACACCTCTCTCATGAAATGAC
TTCCTCCCTCCGTCGCCTTAGGCCGTCCTCGACAACGCCGAGATCCAGCA
CACGATCATGGAGAAGCTGCCCCTCCTCGCGGCCTTCGACGGTTTCAAGC
AGATCACCGGCCGCCGCCTTGATGCCGAAGGGGTAAGGAAATAGAATGAG
GGAGGAAAACGTTCTGGTCTGATTCCTTCTCAAGAAATATACATGCGTCC
AGCTTACACCTACCCTCCCTCCCATCCCTCCCTCCTCCCTCCCTCCCCTA
GACCAAGGCGGGCTTTGCCGCTGGCATCAATGCGATGATGACTGCCTTGC
CTGACATGCTCAAGACCATGAAGGACCCCACCATCTCCACCCGCGTCTTG
TCCGAGTTGCTGGCCGACGACGCCGACGGCTTCAGTGTATGGAGGGAGGG
AGGGAGGAAGGGGTGACACGAATCTTGAGAGATTTCTAGTTCTACTGGCC
GTGGCTGCCTCTCCCCTTTGCGAGAGAAGATGTTGATTTCTTGATGTTTT
GGACTCTTTGGTCTTTTCCGTAGGAGCTGGATACCACAAGTCCCTTGTAA
ATGTATGGACGCCACCCTTTTATGTGTGTGTTCATCTCTCTTTTTTATCC
TCTGCCATTCCTGCTTTTTCTCCTCACAGGAGGTCTTCAACGACGCCTCC
TCGGGCGACAAGGAGGCCATGGCCAAGGTCGAGGCTGCGGTCAACGAGAA
GCTCTTCCCCGGCATTAACACCAGCGCGCTCAAGGTAAGCAACAAAACCT
TCAGACACGGGGGAGGGAGGGAGAAAGTTGTGTCGACTCATGTTTCCAAT
ACCCGTTGAATATCGTCGAGGCCTGAGGCATGAAATGAAAGTACAGAAAG
ACCGTGTGCGCTGTGTGTATGGGGAGGCATTACCTTTATCATCACTACTC
TCGTCCTTTTTGCAATGAAGAAAATAGGATGAAGAAAGCTTGTTCTAGCT
ACCCCGTCCCTTACGCCTCTCATTCCTCCGCCTTATTCCTTCTCCCTTCC
CACCACAGGCCGTGTCCGAAGGCAACCCCCTCAAGTCCCTTCTCGACAAC
AAGGAGGTACGAGGAAGAGAGGAAGAAAAGAAGGGGAACTGGAGAAGACT
GTCTTTATTTTCCATTTAATCACTCAAAACAATCACGTGCTGATCCCTCC
CTCCCTCCCTCTTCCTCCTCCCAGGTCATGCGCCTCATCGACTCTGATCC
AGTCACGTCCATGGCCCTCCGCGCGAACTCCCCCGAAGAGATGGATGAAT
TTGTAAAGAATTACGCCGCCAACCGCCGCTTCCGATTCTGTGCGTAGTCT
TTTTTCCTGCCCACCTTCCTCCTCTCCCTCCCTTCCTTTTCTTTTCGGCT
TGTCTACCGTCGGCTCACCTGCCCTCCATGTCTTTCTCGCTCTTTCCCTC
CAACCACAGAAACTCGTGAACGAGGGCCACGAGAATGGGAAGAGATGGAG
GGAGAGATGGCTCTGTGATGGAGCGTGCCGATGGACGGCACCCACTCCTG
TGTATTTTATGAGGGCAAGCAGGAAGGGAGGGAGGGAAAGACAAGACCAT
GTACCATCATTTCCTAACGTTTTGATTTGTACGTTCGTGGATGGAGGGTG
CTCGGACGGGGGGAGGGAGGATGAGGCGGAGGGCTGGCTAATTGTGACGT
GTCACTCACTACTCAAACAGTACGATTACGATGGAAAGGCGACCGGACGG
AGGGAGGGAGGGACGGAGAGAAGAGGAGCTATGGACCATGACAGCGGGAA
GGATGGAGGGAGGGACGGAGGATTGCGTCTCTAGTAGGCGCATCAACGCG
TGCTCTCCCTTTTCCTCCTCTGCCTCTTTCCGTTTCAGAATCTCTTGTCC
TGCGCTTCTTTATGTGATAAATAAATTTCGATACAATTACGTACATACGT
CTATATATTTATAATGTGCGCTCAGGGAGGGAGGGAGGGAGAAAGTGTCC
GCTGGCCTCTTGCTCGGTCTCCTTGTGAGACGGGAGGGAGGTCGGCGTGT
CGGCCACTGGCGAAGGCGAAAGAGGGAGGAGTAAGACGGAAAGGATCAAA
GAAACAAGGGATAGTGAGAGTACACACACACACGCGCGCTGATTTCTATA
GTGGCTCTGGCTGCGAGAAAACGACACGGTCTGTCGATCTTTGATTTGTC
ACAGCCGTTGTTGCTGCTGCGACTTTTTCCTAATTCCTTCCGGAACGGCC
TCTGGGGCCTGTTGGGGTTTCTTTTTCTTTAAGGGGGAGGCTCCTTCTCA
ATAAGGCTTAAAGGCGTGAATGGAAAATATCTTCCTTCTTCCCACCTCCT
CACTCTTCCCTCCATCCTCCTACTCTCCCTCCCCCTCTGCTGTGGGGGAT
ACGAAATGTTACCTTGACTCAATGGAATGTGTAGCGCTTGTTGATCGCCT
CAGTCACGTCCC
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Coding sequence (CDS) from alignment at chr17:862621..866632+

>NO17G02940.1 ID=NO17G02940.1|Name=NO17G02940.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr17:862621..866632+ (Nannochloropsis oceanica)
ATGGCTCGTCTGTTTCGTTCCGCGGTCGCTCTGGCCATATTCGCCTTTGC
TGGCCTCGCCACTGCCGAGAGCCCCATGCGCCGCAGGCAGACATTCATCA
AAAACGGGCTCTTCTCTCAGCAAATGACCACCGGTGCCCTGAAGGACATG
CTCCCCGCCTACAAGCCCGACGCCGAGCTCACCATGATGCAGGACGCCTG
GCGCAACGGCCTGGATGTCATGTCCGTGTTCACGAGCAACTTCCAGTCGG
AGGGGATGAAGGCCGTCCTCGACAACGCCGAGATCCAGCACACGATCATG
GAGAAGCTGCCCCTCCTCGCGGCCTTCGACGGTTTCAAGCAGATCACCGG
CCGCCGCCTTGATGCCGAAGGGACCAAGGCGGGCTTTGCCGCTGGCATCA
ATGCGATGATGACTGCCTTGCCTGACATGCTCAAGACCATGAAGGACCCC
ACCATCTCCACCCGCGTCTTGTCCGAGTTGCTGGCCGACGACGCCGACGG
CTTCAGTGAGGTCTTCAACGACGCCTCCTCGGGCGACAAGGAGGCCATGG
CCAAGGTCGAGGCTGCGGTCAACGAGAAGCTCTTCCCCGGCATTAACACC
AGCGCGCTCAAGGCCGTGTCCGAAGGCAACCCCCTCAAGTCCCTTCTCGA
CAACAAGGAGGTCATGCGCCTCATCGACTCTGATCCAGTCACGTCCATGG
CCCTCCGCGCGAACTCCCCCGAAGAGATGGATGAATTTGTAAAGAATTAC
GCCGCCAACCGCCGCTTCCGATTCTAA
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Synonyms
Publications