NO17G02920, NO17G02920 (gene) Nannochloropsis oceanica

Overview
NameNO17G02920
Unique NameNO17G02920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4416
Alignment locationchr17:852484..856899 +

Link to JBrowse

Properties
Property NameValue
DescriptionProtein kinase, catalytic domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:852484..856899 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO:0016310phosphorylation
GO:0006468protein phosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0016301kinase activity
GO:0005524ATP binding
GO:0004672protein kinase activity
Vocabulary: INTERPRO
TermDefinition
IPR011009Kinase-like_dom
IPR000719Prot_kinase_dom
Homology
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BLAST of NO17G02920 vs. NCBI_GenBank
Match: EWM24112.1 (Protein kinase, catalytic domain protein [Nannochloropsis gaditana])

HSP 1 Score: 362.5 bits (929), Expect = 3.700e-96
Identity = 239/535 (44.67%), Postives = 293/535 (54.77%), Query Frame = 0 
Query:  385 LVFCPASSLLTHPSSFSVISCAQGSDRWAEPLRLSPPSLG------EERLRQVWVPERHIFP-----PSLPPSLSLCSAR--------------------------------PCLDGSSERKTVLTRASLAARGLLVTLPLDSPSRPEERGREEGKEGGGAR--------EHLSPLVKTGEGHLYTFSLPSSSSPFVLKRYHKHAAGKALKELHALLLLSA-----PSSLXXXXXXFLVALRGVVWE--------EGKGGKEGGGVSKPSALVLEQVLLNGIEAPHRVDLHSFLAYRRSQIQQQQQSLALPPXXXXXXXXXXXXXXXXXXXXXFLHERGLCHKDLHSGNILLTHLEELDVPPSAASAAATTLTPLPASLP-RPLLGIKVADFGLSCPFNPLRAQLDMRALAYVLMEAAHDGVDRSS--MEKKDXXXXXXXXXXXXXXXXXKEWPLPARLTAKWSLSFPPPPEQGPFFSMHDLPPSLLSALDPVFHGAFGEGGKEGKR--EGGSGEG-----QQWTPLGVAMWARR 846
            LV+CPAS   THP++F+V++CA+ SD W+ PLRL+ P  G      +ERLRQVW+PERH  P      S   SLS CSA                                 P  DG   R   +T + L+ARGLL +LP+   +R EE  R +G               +   PL +TGEG LYTFS+    S +VLKRYHKHAAGKALKEL  LL LSA     PSS       FL +L GVVW         EG+ G +    S+PSALVLE+VLLNG +  +RVDL +FL +RR     + Q  +LPP                     F+H +GLCH+D+HSGNILL+H EE  +P S      + + PL  S P RPLL IK+ADFGL+C FNPLRA LD+RALAYVL EAAHDGVDR+    + +                  K+WPLPARLTAKWSLS P P EQ  FFSMHDL P    +L P+  G FG GG++ ++  EGG          QWTPLGVA WARR
Sbjct:   58 LVYCPASCFFTHPATFTVLACAENSDEWSLPLRLTRPRSGLSEEDRQERLRQVWIPERHTLPYPSTLTSSSSSLSSCSAAINAPHGPTPSSSLRLPSLRASTPSCSLPTPLPPSPDGQGTRGERITPSFLSARGLLFSLPIPRSTRREEIERRDGXXXXXXXXXXXXXXDKVFHPLAETGEGKLYTFSV--GHSHYVLKRYHKHAAGKALKELAVLLHLSASIRACPSSAPSVHPPFLASLCGVVWNHNNTEAGGEGESGSKEEKASRPSALVLERVLLNGQKTENRVDLRAFLVHRR-----EAQEASLPPFLPLPLPHLLTLAEALGEALAFVHGKGLCHRDVHSGNILLSHFEEDTLPIS-----GSVVNPLTLSCPQRPLLRIKLADFGLACSFNPLRAWLDLRALAYVLTEAAHDGVDRTGGFGDTEGASERLKQWEDFDPSERKKQWPLPARLTAKWSLSLPSPAEQVSFFSMHDLSPYFRRSLAPLLLGVFG-GGEDRRQPAEGGXXXXXXXXCTQWTPLGVAAWARR 579
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BLAST of NO17G02920 vs. NCBI_GenBank
Match: XP_005853962.1 (hypothetical protein NGA_0461800 [Nannochloropsis gaditana CCMP526] >EKU22396.1 hypothetical protein NGA_0461800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 89.0 bits (219), Expect = 8.000e-14
Identity = 63/132 (47.73%), Postives = 76/132 (57.58%), Query Frame = 0 
Query:  498 EGGGAREHLSPLVKTGEGHLYTFSLPSSSSPFVLKRYHKHAAGKALKELHALLLLSA-----PSSLXXXXXXFLVALRGVVWE--------EGKGGKEGGGVSKPSALVLEQVLLNGIEAPHRVDLHSFLAY 617
            EGG   +   PL + G G LYTFS+    S +VLKRYHKHAAGKALKEL  LL LSA     PSS       FL +L GVVW         EG+ G +    S+PSALVLE+    G +  +RVDL +FL +
Sbjct:    2 EGGNEDKVFHPLAERG-GKLYTFSV--GHSHYVLKRYHKHAAGKALKELAVLLHLSASIRACPSSAPSVHPPFLASLCGVVWNHNNTEAGGEGESGSKEEKASRPSALVLER----GQKTENRVDLRAFLVH 126
The following BLAST results are available for this feature:
BLAST of NO17G02920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24112.13.700e-9644.67Protein kinase, catalytic domain protein [Nannochl... [more]
XP_005853962.18.000e-1447.73hypothetical protein NGA_0461800 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008450NSK008450Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02920.1NO17G02920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G02920.2NO17G02920.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100660g2gene6357Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02920.1NO17G02920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G02920.2NO17G02920.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02920 ID=NO17G02920|Name=NO17G02920|organism=Nannochloropsis oceanica|type=gene|length=4416bp
ACCACAGGCCGGATCACCACCATGCCGCCCGGGTGACGTCCAACCTCCCC
CCACTCTGCTGCCCCGCTTAAAGGGCATGATAAACCGCAAGAAAGTCAAG
GGCAGTCCAGCCTTGTCCTGTCCGTCCGCGTCCTTTCCGTCATCTTTTCC
TCTGGATGCAGCCTTCTCCCTGTCCCTTCTCCAGTCGTCCCGGTGCCTCA
CCCTTGCCCTCCCCTTCCCTCCCTCCCTCAGCCTGTCCCACCTTGCTTCG
TCTTCCTCGTCGTTTTATTCTTCCTGGGTGACGGGAGAGAGGGTAGAGGG
GGCGTTAGGTCTGCCTCCTTCCTCCTCGGCCTTGGCATCCTTCGTTGCTG
TCCCAATGGAGAGGAAGGAGGGAGTGAAAGAGGGAGGGGTATGTGCGTTG
TGGAACCCAGCATTGGACGTATGCCTTGCCCCAAAAGCGGCGGTAACAAA
GGACGGAGGAGCTGCTGGGTGGGAGATGGGGCTGAGAGATCGGGAGGACA
GGAGGCAGACGGAGGAAGGAGGAGGTGGAGGGAGGAGAGGGTGCGGGGGA
TGGACATGGCGGGAGGGAGGGCGGGTGGTGTGGGTTGAGGAAGGAGAGGA
GGAACGGGTGCTGGGTTGGAAGGAGAGGGAAGGAGGAAGGGAAGGGGAGT
GGAGGTTGCTGACGCCGGCTGAGGAGGAAAAGGAGGAGAAGAAGAAGGGC
TGTGGTGACAGCTGTCGTCTCGAGGTAGTGCGACACGAATGGATGGgtaa
gaagcaacgggagggaataggggggaaagtgacgacgacctggaccagct
cagcatcaacagcagcagcgcctacggactatttcaacttagagaagatt
gcatctcccaatgttgatgcctaccctccctttctccctccctccctcct
cagGCCACGACGACGGCGGTCCCTTCCGCCTCGTGTGCGCCTCGTCCCTG
CGCTGCCTTTGCGACTGCACAGACGGCAACGCCAAGgcacgtgccctccc
tccctcccttccttcctccctcagatcgtccttgccgccccatcggtgct
actgagatgaaggagagaacgtttttcccacgtacaccacccacatccca
caatacctccctccataccccttccctccttcctctcctccctccctccc
tcctccctcagGTCCTCTGTCTGTGCCGTCGCCACCTCTCCGACGGCGGC
AAGTGGGAGTACAGGCCTTGGGTTCAAGCGCTCGTGGAAAGGCGGAGTGG
GAGGGCCGTGGGTGTGAGGAACGAGGAAGGGCTGCAGgtaggtaggtagg
gagggagggagggagggaggacgacggaaaacaaataaagagagagctgt
ctggctcacttgcttctccccccctcactctccaacctgcccagCTTGAC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCGTCCGCCCGCCTCGTTTTCTGTCCAGCCTCCTCCCTCCTCACC
CACCCTTCCTCCTTCTCCGTCATTTCCTGTGCCCAAGGCAGCGATCGATG
GGCTGAGCCTCTCCGTCTCTCCCCTCCCTCTTTAGGGGAAGAGAGGCTGC
GGCAGgtagggagggaggtagggagggagggagggagggagggagggagg
gagggagggagggagggggtaagtgagtgagtgagggagggaggggggaa
gggagggaggggggaagggagggaggggggaagggaggtccacgtgttaa
tgttgctctttaacgacagGTTTGGGTGCCGGAACGCCATATCTTTCCTC
CCTCCCTCCCTCCCTCCCTCTCTCTGTGCTCTGCTCGTCCTTGTCTTGAT
GGAAGCAGCGAGAGGAAGACGGTCCTCACCCGCGCCTCCCTTGCCGCCCG
CGGTCTGCTCGTCACCCTCCCTCTCGACAGCCCTTCCAGGCCCGAGGAGA
GAGGGAGGGAGGAAGGGAAGGAGGGGGGGGGGGCGAGAGAGCACCTCTCG
CCTCTTGTCAAGACGGGGGAGGGTCATCTTTACACCTTCTCGCTTCCCTC
GTCTTCCTCCCCCTTTGTCCTCAAGCGCTACCACAAGCACGCTGCAGgta
ggtagatggccttcttcgctccctccctccctccctacctttccccctcc
ttccctcccaccttctttctagttctctgtatgtccattatcttgctccc
atcgatccctcccttcctccctccctccctccctccctccctcccagGCA
AGGCCCTCAAAGAACTCCACGCGCTGCTCCTGCTCTCTGCCCCCTCCTCC
CTCCCTCCCTCCCTCCCGCCCTTCCTAGTTGCCTTGCGAGGGGTGGTGTG
GGAGGAGGGGAAGGGCGGGAAGGAGGGGGGGGGGGTTTCGAAGCCTTCTG
CCCTGGTATTGGAGCAAGTGCTGCTGAATgtacgagaggagggagggagg
gagggagggagggagggagggagggagggagggaggggtagactcgaagg
agattgatctgtcatccactttccactcgtcccttactccctccctcctc
ccctcccctccctcctctttccctccctccctccagGGTATAGAGGCCCC
GCACCGCGTGGATCTGCACTCCTTCCTTGCATATCGTCGCTCACAAATAC
AGCAGCAGCAGCAGTCCCTTGCCCTCCCTCCCGCCCTCCCTCTCTCCCTC
CCTCACCTCCTCGCGCTGGCCGAGGCCCTTGGGGACGCCCTCGGGTTTCT
CCACGAAAGAGGATTGTGCCACAAGGACCTGCACAGgtgggggggggagg
gagggagggagggagggatttaggagggggggatgatgtaccgggaggga
gggagggagggacggacggacggagagggggaggataaggaaacgtcatc
gatgcattggctgcctatttcaattgtgtatgctcgtctgcttcctaaat
cttttcctccctccttaaatcccttcctccttccctccctccctccttcc
cttcctccctcggtgcagCGGGAATATCCTCCTCACTCACTTGGAGGAGC
TCGACGTCCCACCCTCAGCAGCATCAGCAGCAGCAACAACATTAACACCC
CTCCCTGCCTCCCTCCCTCGCCCCCTCCTTGGCATCAAGGTGGCGGATTT
TGGTCTCTCCTGCCCTTTCAATCCCCTGAGGGCCCAGCTGGACATGCGGG
CGCTGGgtagggagggagggagggagggagggaggaagtaaaggaagaag
cgaggggaggaggaccacaaacgtttttttcaacacaatgtgaggcggtc
tctaatcgtgtctaccttcctcttccactctttcccttcctttccgacag
CCTACGTGCTGATGGAGGCGGCGCACGATGGGGTGGATCGCTCCTCAATG
GAGAAGAAAGACGAAGGACCTGAGGAAGGGAGGGAGGAAGGGAGGGAGGA
GCTGAACAAGGAGAAGGAGTGGCCACTGCCAGCCCGTCTGACGGCCAAgt
acggagggaggggggaagggaaggaagggggggcgggggctatgcggctg
catttactgaatttccacacccccactttattcgcatgcttcttcccatc
ccttcctttcctccctctttcccccccccctccctcctcctctttttcct
tttacagATGGTCTCTCTCCTTCCCTCCCCCGCCCGAGCAAGGTCCTTTC
TTCTCCATGCACGACCTCCCTCCCTCCCTCCTTTCCGCCCTCGATCCCGT
CTTTCACGGGGCGTTTGGGGAGGGGGGGAAGGAAGGAAAGAGGGAGGGAG
GAAGTGGGGAAGGGCAGCAATGGACACCGTTAGGGGTGGCGATGTGGGCG
CGGAGGGCGGGAGGGAGGAAGGGAGGAAAGGAGAGAGGGGCAGGCGTGGA
AATGACAGGCTAAGGTTCACATAGACATGTGAAGATAGGAAAAAACTGGA
AAGAGGAAAATGATGAGAGAAGTGGCCCCTATGACAAGAGCAAGGGAAGA
GCATGAAGAGCATCACGGAGGAAGCCAGACTCAACTGCCTCGACGGATTT
GTTTATCAGAATGTAACTAGTGATGTGTGTAAGCACCCAATATCTGGTTG
TGAGATGCCGTATATGGTCTAGTCTAGTGACTAGTGATGTGTGTAAGCAC
CCAATATCTGGTTGTGAGATGCCGTATATGGTCTAGTCTAGTGACTAGTG
ATGTGTGTAAGCACCC
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protein sequence of NO17G02920.1

>NO17G02920.1-protein ID=NO17G02920.1-protein|Name=NO17G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=648bp
MKERTFFPRTPPTSHNTSLHTPSLLPLLPPSLLPQVLCLCRRHLSDGGKW
EYRPWVQALVERRSGRAVGVRNEEGLQLDSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSARLVFCPASSLLTHPSSFSVISCAQGSDRWAEPL
RLSPPSLGEERLRQVWVPERHIFPPSLPPSLSLCSARPCLDGSSERKTVL
TRASLAARGLLVTLPLDSPSRPEERGREEGKEGGGAREHLSPLVKTGEGH
LYTFSLPSSSSPFVLKRYHKHAAGKALKELHALLLLSAPSSLPPSLPPFL
VALRGVVWEEGKGGKEGGGVSKPSALVLEQVLLNGIEAPHRVDLHSFLAY
RRSQIQQQQQSLALPPALPLSLPHLLALAEALGDALGFLHERGLCHKDLH
SGNILLTHLEELDVPPSAASAAATTLTPLPASLPRPLLGIKVADFGLSCP
FNPLRAQLDMRALAYVLMEAAHDGVDRSSMEKKDEGPEEGREEGREELNK
EKEWPLPARLTAKWSLSFPPPPEQGPFFSMHDLPPSLLSALDPVFHGAFG
EGGKEGKREGGSGEGQQWTPLGVAMWARRAGGRKGGKERGAGVEMTG*
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protein sequence of NO17G02920.2

>NO17G02920.2-protein ID=NO17G02920.2-protein|Name=NO17G02920.2|organism=Nannochloropsis oceanica|type=polypeptide|length=864bp
MINRKKVKGSPALSCPSASFPSSFPLDAAFSLSLLQSSRCLTLALPFPPS
LSLSHLASSSSSFYSSWVTGERVEGALGLPPSSSALASFVAVPMERKEGV
KEGGVCALWNPALDVCLAPKAAVTKDGGAAGWEMGLRDREDRRQTEEGGG
GGRRGCGGWTWREGGRVVWVEEGEEERVLGWKEREGGREGEWRLLTPAEE
EKEEKKKGCGDSCRLEVVRHEWMGHDDGGPFRLVCASSLRCLCDCTDGNA
KVLCLCRRHLSDGGKWEYRPWVQALVERRSGRAVGVRNEEGLQLDSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSARLVFCPASSLLTHPSSF
SVISCAQGSDRWAEPLRLSPPSLGEERLRQVWVPERHIFPPSLPPSLSLC
SARPCLDGSSERKTVLTRASLAARGLLVTLPLDSPSRPEERGREEGKEGG
GAREHLSPLVKTGEGHLYTFSLPSSSSPFVLKRYHKHAAGKALKELHALL
LLSAPSSLPPSLPPFLVALRGVVWEEGKGGKEGGGVSKPSALVLEQVLLN
GIEAPHRVDLHSFLAYRRSQIQQQQQSLALPPALPLSLPHLLALAEALGD
ALGFLHERGLCHKDLHSGNILLTHLEELDVPPSAASAAATTLTPLPASLP
RPLLGIKVADFGLSCPFNPLRAQLDMRALAYVLMEAAHDGVDRSSMEKKD
EGPEEGREEGREELNKEKEWPLPARLTAKWSLSFPPPPEQGPFFSMHDLP
PSLLSALDPVFHGAFGEGGKEGKREGGSGEGQQWTPLGVAMWARRAGGRK
GGKERGAGVEMTG*
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Synonyms
Publications