NO17G02560, NO17G02560 (gene) Nannochloropsis oceanica

Overview
NameNO17G02560
Unique NameNO17G02560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1547
Alignment locationchr17:753865..755411 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:753865..755411 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO17G02560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL160nonsL160Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR029ngnoR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02560.1NO17G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02560.1NO17G02560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02560 ID=NO17G02560|Name=NO17G02560|organism=Nannochloropsis oceanica|type=gene|length=1547bp
ATGACAAGACGCAGGCAAAACACCTCACGgtagagaggaaggaaggaagg
gagggagggagggagggagggagggagggagggagaggataagtaagaga
aaacaatgagtagtttgaggaaacacacccacaaccctccccccctccct
ccctccctttctccctccctcccttactttcattcacacatcacacagCA
TCCAGCAGCAACTAAAAAATGGCGCAAAACAGCTATCCTCTCCTCCTCGC
TCCTCCTCCTCCCCTGCTTCCTCCTCTCCGCCCTCCCTCTCTACCTTCCT
GTGGCGTGTCGAATGGGCCTTTCCCGATGCCACCCCTCCCTCCCTCCCTC
CCTCCCTTCCTTTCTCCTCCTCATCCCCCTCCTCCTCCTCCTCCTCCTCC
TTGAAGCTAGTTGATGCCATGCACCCGGAGAGCAAGCCTCTCTGGCCCGC
CCTCCTTCGGCACCTCAACCCACGACCGgtacctccctccctctctcctg
ccctccgatattccgtcagtgcgtttcacatttgcaacatttatcctcac
cctccttcccgcttcccttcttccctccttccttccctccctcccttgct
ccctagGGAAACGCCCCTCTCCGGGCTCGACTCAAAGCCTACTGCCGCCT
CCTGTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCACGCGCCACCACCACCATTCCTGCCCTAGGAGGAGGAGGA
GAAGGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGAAGCTTCTCCCCCCCCTCCCTCCCCCCCCTTCCATTTTTACCTCG
AGCGACAACCTCGCCGGGTGCAACGGCCGTGTTACTGGCGTGTGGACCCC
ATGCAGCCGCTGGGAGAGTCGCTCAAGGGGAAGgtgaggcagggagggat
ggggggaagggagggagggagggaggaagggaaggttgagttaccctcat
ctgttttgctcttgactcttctaatttcctctttcattccctccatccct
ccttcgcttcctcccttaatccttaccccagGTCATCATTGAATTCCCCA
TCATTCACGTGACCCTCCCCTCCTCCTCTTCCTCTTTCCCCCTTGCTATT
GAAGAGATGGGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGA
GGAAAATGAGGAGGAGGGAGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGG
AGAGCAGCAGCGACGAGGATGAGGATGATGATGGCGATGATGATGAGGAG
GAGGAGGAGGACGACGACGACGACAACGACGAGAACAAAGAGGATAGAGA
GGAAAGGGAAAAAATGAAGGAGGGAGGAGAGGCGGGAATGAAGGAGGCTC
GCTTCGAGCCTGAAGGTGACAGAGTGTGAGTTAAGAGGGGCGAACGTCAG
AGGAAGGAGGGAGGGGGGAAAAGAGAGAGTGGAAGGAAGGAAAGAGGGAG
GGGAAAGCCTCCTCGCATATTGTAAATCAAGCAACAATCAATAGCTC
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protein sequence of NO17G02560.1

>NO17G02560.1-protein ID=NO17G02560.1-protein|Name=NO17G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MTRRRQNTSRIQQQLKNGAKQLSSPPRSSSSPASSSPPSLSTFLWRVEWA
FPDATPPSLPPSLPFSSSSPSSSSSSSLKLVDAMHPESKPLWPALLRHLN
PRPGNAPLRARLKAYCRLLSSSSSSSSSSSSSSSSSSSRATTTIPALGGG
GEGEGGGGGEGGGGGGGGGEASPPPPSPPFHFYLERQPRRVQRPCYWRVD
PMQPLGESLKGKVIIEFPIIHVTLPSSSSSFPLAIEEMGEEEEEEEEEEK
EEENEEEGEEEEEEEEEEESSSDEDEDDDGDDDEEEEEDDDDDNDENKED
REEREKMKEGGEAGMKEARFEPEGDRV*
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Synonyms
Publications