NO17G02560.1, NO17G02560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02560.1
Unique NameNO17G02560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1102
Alignment locationchr17:753865..755411 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:753865..755411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO17G02560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02560NO17G02560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02560.1NO17G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02560.1.cds1NO17G02560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02560.1.cds2NO17G02560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02560.1.cds3NO17G02560.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02560.1.cds4NO17G02560.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02560.1 ID=NO17G02560.1|Name=NO17G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1102bp
ATGACAAGACGCAGGCAAAACACCTCACGCATCCAGCAGCAACTAAAAAA
TGGCGCAAAACAGCTATCCTCTCCTCCTCGCTCCTCCTCCTCCCCTGCTT
CCTCCTCTCCGCCCTCCCTCTCTACCTTCCTGTGGCGTGTCGAATGGGCC
TTTCCCGATGCCACCCCTCCCTCCCTCCCTCCCTCCCTTCCTTTCTCCTC
CTCATCCCCCTCCTCCTCCTCCTCCTCCTCCTTGAAGCTAGTTGATGCCA
TGCACCCGGAGAGCAAGCCTCTCTGGCCCGCCCTCCTTCGGCACCTCAAC
CCACGACCGGGAAACGCCCCTCTCCGGGCTCGACTCAAAGCCTACTGCCG
CCTCCTGTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCACGCGCCACCACCACCATTCCTGCCCTAGGAGGAGGA
GGAGAAGGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGAAGCTTCTCCCCCCCCTCCCTCCCCCCCCTTCCATTTTTACC
TCGAGCGACAACCTCGCCGGGTGCAACGGCCGTGTTACTGGCGTGTGGAC
CCCATGCAGCCGCTGGGAGAGTCGCTCAAGGGGAAGGTCATCATTGAATT
CCCCATCATTCACGTGACCCTCCCCTCCTCCTCTTCCTCTTTCCCCCTTG
CTATTGAAGAGATGGGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAG
GAGGAGGAAAATGAGGAGGAGGGAGAGGAGGAGGAAGAGGAGGAGGAAGA
GGAGGAGAGCAGCAGCGACGAGGATGAGGATGATGATGGCGATGATGATG
AGGAGGAGGAGGAGGACGACGACGACGACAACGACGAGAACAAAGAGGAT
AGAGAGGAAAGGGAAAAAATGAAGGAGGGAGGAGAGGCGGGAATGAAGGA
GGCTCGCTTCGAGCCTGAAGGTGACAGAGTGTGAGTTAAGAGGGGCGAAC
GTCAGAGGAAGGAGGGAGGGGGGAAAAGAGAGAGTGGAAGGAAGGAAAGA
GGGAGGGGAAAGCCTCCTCGCATATTGTAAATCAAGCAACAATCAATAGC
TC
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protein sequence of NO17G02560.1

>NO17G02560.1-protein ID=NO17G02560.1-protein|Name=NO17G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MTRRRQNTSRIQQQLKNGAKQLSSPPRSSSSPASSSPPSLSTFLWRVEWA
FPDATPPSLPPSLPFSSSSPSSSSSSSLKLVDAMHPESKPLWPALLRHLN
PRPGNAPLRARLKAYCRLLSSSSSSSSSSSSSSSSSSSRATTTIPALGGG
GEGEGGGGGEGGGGGGGGGEASPPPPSPPFHFYLERQPRRVQRPCYWRVD
PMQPLGESLKGKVIIEFPIIHVTLPSSSSSFPLAIEEMGEEEEEEEEEEK
EEENEEEGEEEEEEEEEEESSSDEDEDDDGDDDEEEEEDDDDDNDENKED
REEREKMKEGGEAGMKEARFEPEGDRV*
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mRNA from alignment at chr17:753865..755411+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02560.1 ID=NO17G02560.1|Name=NO17G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1547bp|location=Sequence derived from alignment at chr17:753865..755411+ (Nannochloropsis oceanica)
ATGACAAGACGCAGGCAAAACACCTCACGGTAGAGAGGAAGGAAGGAAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGATAAGTAAGAGA
AAACAATGAGTAGTTTGAGGAAACACACCCACAACCCTCCCCCCCTCCCT
CCCTCCCTTTCTCCCTCCCTCCCTTACTTTCATTCACACATCACACAGCA
TCCAGCAGCAACTAAAAAATGGCGCAAAACAGCTATCCTCTCCTCCTCGC
TCCTCCTCCTCCCCTGCTTCCTCCTCTCCGCCCTCCCTCTCTACCTTCCT
GTGGCGTGTCGAATGGGCCTTTCCCGATGCCACCCCTCCCTCCCTCCCTC
CCTCCCTTCCTTTCTCCTCCTCATCCCCCTCCTCCTCCTCCTCCTCCTCC
TTGAAGCTAGTTGATGCCATGCACCCGGAGAGCAAGCCTCTCTGGCCCGC
CCTCCTTCGGCACCTCAACCCACGACCGGTACCTCCCTCCCTCTCTCCTG
CCCTCCGATATTCCGTCAGTGCGTTTCACATTTGCAACATTTATCCTCAC
CCTCCTTCCCGCTTCCCTTCTTCCCTCCTTCCTTCCCTCCCTCCCTTGCT
CCCTAGGGAAACGCCCCTCTCCGGGCTCGACTCAAAGCCTACTGCCGCCT
CCTGTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCACGCGCCACCACCACCATTCCTGCCCTAGGAGGAGGAGGA
GAAGGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGAAGCTTCTCCCCCCCCTCCCTCCCCCCCCTTCCATTTTTACCTCG
AGCGACAACCTCGCCGGGTGCAACGGCCGTGTTACTGGCGTGTGGACCCC
ATGCAGCCGCTGGGAGAGTCGCTCAAGGGGAAGGTGAGGCAGGGAGGGAT
GGGGGGAAGGGAGGGAGGGAGGGAGGAAGGGAAGGTTGAGTTACCCTCAT
CTGTTTTGCTCTTGACTCTTCTAATTTCCTCTTTCATTCCCTCCATCCCT
CCTTCGCTTCCTCCCTTAATCCTTACCCCAGGTCATCATTGAATTCCCCA
TCATTCACGTGACCCTCCCCTCCTCCTCTTCCTCTTTCCCCCTTGCTATT
GAAGAGATGGGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGA
GGAAAATGAGGAGGAGGGAGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGG
AGAGCAGCAGCGACGAGGATGAGGATGATGATGGCGATGATGATGAGGAG
GAGGAGGAGGACGACGACGACGACAACGACGAGAACAAAGAGGATAGAGA
GGAAAGGGAAAAAATGAAGGAGGGAGGAGAGGCGGGAATGAAGGAGGCTC
GCTTCGAGCCTGAAGGTGACAGAGTGTGAGTTAAGAGGGGCGAACGTCAG
AGGAAGGAGGGAGGGGGGAAAAGAGAGAGTGGAAGGAAGGAAAGAGGGAG
GGGAAAGCCTCCTCGCATATTGTAAATCAAGCAACAATCAATAGCTC
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Coding sequence (CDS) from alignment at chr17:753865..755411+

>NO17G02560.1 ID=NO17G02560.1|Name=NO17G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at chr17:753865..755411+ (Nannochloropsis oceanica)
ATGACAAGACGCAGGCAAAACACCTCACGCATCCAGCAGCAACTAAAAAA
TGGCGCAAAACAGCTATCCTCTCCTCCTCGCTCCTCCTCCTCCCCTGCTT
CCTCCTCTCCGCCCTCCCTCTCTACCTTCCTGTGGCGTGTCGAATGGGCC
TTTCCCGATGCCACCCCTCCCTCCCTCCCTCCCTCCCTTCCTTTCTCCTC
CTCATCCCCCTCCTCCTCCTCCTCCTCCTCCTTGAAGCTAGTTGATGCCA
TGCACCCGGAGAGCAAGCCTCTCTGGCCCGCCCTCCTTCGGCACCTCAAC
CCACGACCGGGAAACGCCCCTCTCCGGGCTCGACTCAAAGCCTACTGCCG
CCTCCTGTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCACGCGCCACCACCACCATTCCTGCCCTAGGAGGAGGA
GGAGAAGGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGAAGCTTCTCCCCCCCCTCCCTCCCCCCCCTTCCATTTTTACC
TCGAGCGACAACCTCGCCGGGTGCAACGGCCGTGTTACTGGCGTGTGGAC
CCCATGCAGCCGCTGGGAGAGTCGCTCAAGGGGAAGGTCATCATTGAATT
CCCCATCATTCACGTGACCCTCCCCTCCTCCTCTTCCTCTTTCCCCCTTG
CTATTGAAGAGATGGGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAG
GAGGAGGAAAATGAGGAGGAGGGAGAGGAGGAGGAAGAGGAGGAGGAAGA
GGAGGAGAGCAGCAGCGACGAGGATGAGGATGATGATGGCGATGATGATG
AGGAGGAGGAGGAGGACGACGACGACGACAACGACGAGAACAAAGAGGAT
AGAGAGGAAAGGGAAAAAATGAAGGAGGGAGGAGAGGCGGGAATGAAGGA
GGCTCGCTTCGAGCCTGAAGGTGACAGAGTGTGA
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Synonyms
Publications