NO17G02230, NO17G02230 (gene) Nannochloropsis oceanica

Overview
NameNO17G02230
Unique NameNO17G02230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2253
Alignment locationchr17:651235..653487 -

Link to JBrowse

Properties
Property NameValue
DescriptionRNA helicase, DEAD-box type
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:651235..653487 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of NO17G02230 vs. NCBI_GenBank
Match: EWM24183.1 (RNA helicase, DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 584.7 bits (1506), Expect = 4.000e-163
Identity = 327/514 (63.62%), Postives = 388/514 (75.49%), Query Frame = 0
Query:  215 MRAFRRRLRIKVTGENIPDCLPSFSLLPSLLSSSFLSXXXSSLVQTLLQNVEASHWKEPTPIQMQALPILLLGRDLLASSPTGTGKTAAFIIPTLLRLGAPISKGRPKHTKEEAAAAGGNRRGPRALFLAPTRELAAQIYREVERLSQGKKFKIGLLSKALAATRGEGGREGGVLGAYDVLVATPMRLVQVVREGGIDLGNVLSVVLDEADKLLELGREGRRDEEGHVLQPDKSFLGQVDEILAACSHPQVQRALFSATLPPLIEDLARSILRDPLSVSIGLYAASLTNNYQGGAAVPDTVTQSLLFVGREEGKLLALRQILREGVLPPVLVFLQTKERARELYHELCYDNFKVEVMHADRSPEQRAELLHKVRTGEVWVLLCTDICSRGLDLRTVNMVINYDLPSSCVAYVHXXXXXXXXXXXXXAVSFWTEGDMLEGKGLRSIANVIKLSGGDVPTWMTALKPTNSKGMGGRRKEGGREGGKGPTFRRERISTGTAWDRERAKRKSKVWGKG 729
            MRAFRRRLRIK  GEN+PDCLPSFSLLP            +SL +TLL+N+E+S WKEPTPIQMQALP+L +GRDLLA++PTG+GKTAAF++PTLLRL              E A A   R GPRAL LAPTRELA+QI  EV+RL+ G+ FK+ ++SKALAAT+ E G+  GV   YD+LVATPMRL+Q +REG +DL  V +VVLDEADKL ELGREG+++  G  L+PDKSFLGQVDEILAAC++P+VQRALFSATLPPLI+DLA S+LRDP+SVS+GL   S  +NY   AAVP++VTQ L+FVGREEGKLLALRQ+L++GVLPP+LVFL+ KERARELYHELCYD+ +V+VMHADRS EQRA LL KVR G VWVLLCTD+C+RGLDLR VN+V+NYDLP SCV YVHXXXXXXXXXXXXX  +FWTE DM EG  LR+IANVIKLSGG VP+WM  LK                                TAWD E+AKR+ +   +G
Sbjct:   94 MRAFRRRLRIKARGENVPDCLPSFSLLP---------CPDASLKRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRL--------------EKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDEAGQ--GVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGL--PSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAVWVLLCTDLCARGLDLRAVNVVVNYDLPPSCVTYVHXXXXXXXXXXXXXXXTFWTERDMEEGGSLRAIANVIKLSGGQVPSWMAGLK--------XXXXXXXXXXXXXXXXXXXXXXXXTAWDVEKAKRRKEGRAQG 572          
BLAST of NO17G02230 vs. NCBI_GenBank
Match: CBJ26121.1 (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 406.0 bits (1042), Expect = 2.600e-109
Identity = 238/452 (52.65%), Postives = 315/452 (69.69%), Query Frame = 0
Query:  218 FRRRLRIKVTGENIPDCLPSFSLLPSLLSSSFLSXXXSSLVQTLLQNVEASHWKEPTPIQMQALPILLLGRDLLASSPTGTGKTAAFIIPTLLRLGAPISKGRPKHTKEEAAAAGGNRRGPRALFLAPTRELAAQIYREVERLSQGKKFKIGLLSKALA--ATRGEGGREGGVLGAYDVLVATPMRLVQVVREGGIDLGNVLSVVLDEADKLLELGREGRRDEEGHVLQPDKSFLGQVDEILAACSHPQVQRALFSATLPPLIEDLARSILRDPLSVSIGLYAASLTNNYQGGAAVPDTVTQSLLFVGREEGKLLALRQILREGVLPPVLVFLQTKERARELYHELCYDNFKVEVMHADRSPEQRAELLHKVRTGEVWVLLCTDICSRGLDLRTVNMVINYDLPSSCVAYVHXXXXXXXXXXXXXAVSFWTEGDMLEGKGLRSIANVIKLSG 668
            FRRR+ IKV GE + D + SFS +PS  +S           + LL NVE S WKEPTP+QMQA+PIL+ GRDLLA++PTG+GKTAAF++P +LRLG  + +  P+ +            G R + LAPTRELAAQI+R+V RLS+G++ ++ LL+KA A  A    G      L  YD++V+TPMRLV +VRE  + L +V  VVLDEADKL + G              DK+F+GQVDE+LAACSH QVQRALFSAT+   +++L+ S+LRDP+ +++G      T N   GAA    + Q L++VGREEGKLLA+RQ+++EG+ PPVLVFLQ+K+RA+ L+HEL YD    +VMHA R+ +QR  ++ + RTGE+WVL+CTD+ +RG+D + VNMVINYD P S V+Y+HXXXXXXXXXXXX AV+ +TE DM     LRSIANVI+LSG
Sbjct:   40 FRRRMGIKVKGEEVADPMESFSEMPSATTSE----DAGQTRRVLLHNVEESAWKEPTPVQMQAVPILVAGRDLLAAAPTGSGKTAAFVMPMILRLG--VQRADPQAS------------GVRGILLAPTRELAAQIHRDVVRLSRGRRLRVCLLTKAGATKAAAATGMDSRNALSGYDIVVSTPMRLVALVRERAVCLASVEMVVLDEADKLFDAGAASGGS--------DKAFIGQVDEVLAACSHQQVQRALFSATVGQQVKELSESVLRDPIFLTVG------TQN--AGAA---DIDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGINTDVMHASRTQDQRDNIIQRFRTGEIWVLICTDLVARGIDFKGVNMVINYDFPQSAVSYIHXXXXXXXXXXXXVAVTLFTESDM---NSLRSIANVIRLSG 451          
BLAST of NO17G02230 vs. NCBI_GenBank
Match: GAY00513.1 (Hypothetical protein PINS_008339, partial [Pythium insidiosum])

HSP 1 Score: 393.7 bits (1010), Expect = 1.300e-105
Identity = 229/507 (45.17%), Postives = 322/507 (63.51%), Query Frame = 0
Query:  215 MRAFRRRLRIKVTGENIPDCLPSFSLLPSLLSSSFLSXXXSSLVQTLLQNVEASHWKEPTPIQMQALPILLLGRDLLASSPTGTGKTAAFIIPTLLRLGAPISKGRPKHTKEEAAAAGGNRRGPRALFLAPTRELAAQIYREVERLSQGKKFKIGLLSKALAATRGEGGREGGVLGAYDVLVATPMRLVQVVREGGIDLGNVLSVVLDEADKLLELGREGRRDEEGHVLQPDKSFLGQVDEILAACSHPQVQRALFSATLPPLIEDLARSILRDPLSVSIGLYAASLTNNYQGGAAVPDTVTQSLLFVGREEGKLLALRQILREGVLPPVLVFLQTKERARELYHELCYDNFKVEVMHADRSPEQRAELLHKVRTGEVWVLLCTDICSRGLDLRTVNMVINYDLPSSCVAYVHXXXXXXXXXXXXXAVSFWTEGDMLEGKGLRSIANVIKLSGGDVPTWMTALKPTNSKGMGGRRKEGGREGGKGPTFRRERISTGTAWDRERAKRK 722
            +R FR+++ I+V G ++P  + +F  +        L+     +   LL N+EAS +KEPTPIQMQA+P LLLGRD+LA++PTG+GKTAAF IP L  LGAP                   ++G RA+ L+PTRELA QI+ E +RLS G+KF I LLSKA AAT     +    +  +D+++ATP+RLV +V+E  +DL  V  + LDEAD+L ++G                 F+ Q+DEILAAC+HP+VQRA+FSAT+   +E++A+S+LRDP+ +SIG+  A        GA+   ++ Q L+FVG+EEGKL+A++Q+++EG+  P L+F+Q KERA ELYHEL YD   V  +HADR+ EQR E + + R G+VWVL+CTD+ SRG+D + VNMVINYD P   V+Y+H             AV+F+TE DM     LR+IANV+KLSG DVP WM  LK    K    +RK    +  K P  +R+RIST + +D ++A ++
Sbjct:  174 VRLFRKQMNIRVEGTSVPAPIATFDAMK-------LNATQLKMRSVLLHNIEASEYKEPTPIQMQAIPSLLLGRDVLATAPTGSGKTAAFAIPMLANLGAP------------------QQQGIRAVVLSPTRELAVQIFHEFQRLSAGRKFHIVLLSKATAATMISSIKNNCTVN-HDLVIATPLRLVHLVQEAKLDLSMVEMICLDEADRLFDMG-----------------FVEQIDEILAACTHPRVQRAMFSATMLQGVEEMAQSVLRDPVKISIGVKNA--------GAS---SIEQKLVFVGKEEGKLVAMKQLIQEGLRLPALLFVQNKERANELYHELLYDGINVGAVHADRTKEQRDETIRQFRAGQVWVLICTDLMSRGIDFKAVNMVINYDFPQDAVSYIHRIGRTGRGGRKGLAVTFFTEDDMAY---LRTIANVMKLSGCDVPDWMLTLK----KASATKRK----QLLKAPP-QRKRISTVSGYDLQKAHKR 614          
BLAST of NO17G02230 vs. NCBI_GenBank
Match: XP_005855760.1 (putative dead box rna helicase [Nannochloropsis gaditana CCMP526] >EKU20601.1 putative dead box rna helicase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 386.7 bits (992), Expect = 1.600e-103
Identity = 204/307 (66.45%), Postives = 247/307 (80.46%), Query Frame = 0
Query:  286 LGRDLLASSPTGTGKTAAFIIPTLLRLGAPISKGRPKHTKEEAAAAGGNRRGPRALFLAPTRELAAQIYREVERLSQGKKFKIGLLSKALAATRGEGGREGGVLGAYDVLVATPMRLVQVVREGGIDLGNVLSVVLDEADKLLELGREGRRDEEGHVLQPDKSFLGQVDEILAACSHPQVQRALFSATLPPLIEDLARSILRDPLSVSIGLYAASLTNNYQGGAAVPDTVTQSLLFVGREEGKLLALRQILREGVLPPVLVFLQTKERARELYHELCYDNFKVEVMHADRSPEQRAELLHKVRTGEV 593
            +GRDLLA++PTG+GKTAAF++PTLLRL              E A A   R GPRAL LAPTRELA+QI  EV+RL+ G+ FK+ ++SKALAAT+ E G+  GV   YD+LVATPMRL+Q +REG +DL  V +VVLDEADKL ELGREG+++  G  L+PDKSFLGQVDEILAAC++P+VQRALFSATLPPLI+DLA S+LRDP+SVS+GL   S  +NY   AAVP++VTQ L+FVGREEGKLLALRQ+L++GVLPP+LVFL+ KERARELYHELCYD+ +V+VMHADRS EQRA LL KVR G V
Sbjct:    1 MGRDLLATAPTGSGKTAAFVLPTLLRL--------------EKAEARLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDEAGQ--GVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGL--PSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAV 289          
BLAST of NO17G02230 vs. NCBI_GenBank
Match: ETI36081.1 (hypothetical protein F443_17720 [Phytophthora parasitica P1569] >ETL82973.1 hypothetical protein L917_16977 [Phytophthora parasitica])

HSP 1 Score: 379.8 bits (974), Expect = 2.000e-101
Identity = 247/518 (47.68%), Postives = 334/518 (64.48%), Query Frame = 0
Query:  215 MRAFRRRLRIKVTGENIPDCLPSFSLLPSLLSSSFLSXXXSSLVQTLLQNVEASHWKEPTPIQMQALPILLLGRDLLASSPTGTGKTAAFIIPTLLRLGAPISKGRPKHTKEEAAAAGGNRRGPRALFLAPTRELAAQIYREVERLSQGKKFKIGLLSKALAATRGEGGREGGVLGAYDVLVATPMRLVQVVREGGIDLGNVLSVVLDEADKLLELGREGRRDEEGHVLQPDKSFLGQVDEILAACSHPQVQRALFSATLPPLIEDLARSILRDPLSVSIGLYAASLTNNYQGGAAVPDTVTQSLLFVGREEGKLLALRQILREGVLPPVLVFLQTKERARELYHELCYDNFKVEVMHADRSPEQRAELLHKVRTGEVWVLLCTDICSRGLDLRTVNMVINYDLPSSCVAYVHXXXXXXXXXXXXXAVSFWTEGDMLEGKGLRSIANVIKLSGGDVPTWMTALKPTNSKGMGGRRKEGGREGGKGPTFRRERISTGTAWDRERAKRKSKVWGKGKHIK 733
            ++  RR+L I+V+G ++P  + SF+ +    S+S        + + LLQN+E S +KEPT +QMQA+P  LL RD+LA++PTG+GKTAAF IP L  L                AA  G   G R++ LAPTR+LA QI  E  RL+ GKK  I LLSKA AAT     +    +  +DVL+ATP+RLV +++E  +DL  V  V LDEAD+LLELG                 F+ QVDEI AAC+HP+VQRA+FSAT+   +E+LA+++LRDP+ V++G      T N     A   T+ Q L+FVG+EEGKL+A++Q+L+EG+  P L+F+Q KERA ELYHEL YD   +  +HADR+ EQR +++ + RTGEVWVL+CTD+ SRG+D + VNMVINYD P S V+Y  XXXXXXXXXXXXXAV+F+TE DM+    LR+IANV+K+SG +VP WM +LK    K    +RKE  +     PT  R RI+T + +D ++A R  K   + KH K
Sbjct:  218 VQMLRRQLGIRVSGVSVPAPITSFADMRLDSSAS-----AQQMKRLLLQNIERSEYKEPTSVQMQAIPSFLLRRDVLATAPTGSGKTAAFAIPILANL----------------AAGSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQTKSKLAVN-HDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELG-----------------FVEQVDEIFAACTHPRVQRAMFSATMLEGVEELAQTVLRDPVKVAVG------TKN-----AGASTIDQKLVFVGKEEGKLVAMKQLLQEGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNMVINYDFPQSAVSYXXXXXXXXXXXXXXXAVTFFTEDDMVY---LRTIANVMKISGCEVPDWMLSLK----KASVSKRKELLK---APPT--RHRINTVSGYDLQKANR-LKQMKQAKHKK 672          
BLAST of NO17G02230 vs. NCBI_GenBank
Match: XP_008896209.1 (hypothetical protein PPTG_04135 [Phytophthora parasitica INRA-310] >ETN18561.1 hypothetical protein PPTG_04135 [Phytophthora parasitica INRA-310])

HSP 1 Score: 379.8 bits (974), Expect = 2.000e-101
Identity = 243/506 (48.02%), Postives = 329/506 (65.02%), Query Frame = 0
Query:  215 MRAFRRRLRIKVTGENIPDCLPSFSLLPSLLSSSFLSXXXSSLVQTLLQNVEASHWKEPTPIQMQALPILLLGRDLLASSPTGTGKTAAFIIPTLLRLGAPISKGRPKHTKEEAAAAGGNRRGPRALFLAPTRELAAQIYREVERLSQGKKFKIGLLSKALAATRGEGGREGGVLGAYDVLVATPMRLVQVVREGGIDLGNVLSVVLDEADKLLELGREGRRDEEGHVLQPDKSFLGQVDEILAACSHPQVQRALFSATLPPLIEDLARSILRDPLSVSIGLYAASLTNNYQGGAAVPDTVTQSLLFVGREEGKLLALRQILREGVLPPVLVFLQTKERARELYHELCYDNFKVEVMHADRSPEQRAELLHKVRTGEVWVLLCTDICSRGLDLRTVNMVINYDLPSSCVAYVHXXXXXXXXXXXXXAVSFWTEGDMLEGKGLRSIANVIKLSGGDVPTWMTALKPTNSKGMGGRRKEGGREGGKGPTFRRERISTGTAWDRERAKR 721
            ++  RR+L I+V+G ++P  + SF+ +    S+S        + + LLQN+E S +KEPT +QMQA+P  LL RD+LA++PTG+GKTAAF IP L  L                AA  G   G R++ LAPTR+LA QI  E  RL+ GKK  I LLSKA AAT     +    +  +DVL+ATP+RLV +++E  +DL  V  V LDEAD+LLELG                 F+ QVDEI AAC+HP+VQRA+FSAT+   +E+LA+++LRDP+ V++G      T N     A   T+ Q L+FVG+EEGKL+A++Q+L+EG+  P L+F+Q KERA ELYHEL YD   +  +HADR+ EQR +++ + RTGEVWVL+CTD+ SRG+D + VNMVINYD P S V+Y  XXXXXXXXXXXXXAV+F+TE DM+    LR+IANV+K+SG +VP WM +LK    K    +RKE  +     PT  R RI+T + +D ++A R
Sbjct:  218 VQMLRRQLGIRVSGVSVPAPITSFADMRLDSSAS-----AQQMKRLLLQNIERSEYKEPTSVQMQAIPSFLLRRDVLATAPTGSGKTAAFAIPILANL----------------AAGSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQTKSKLAVN-HDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELG-----------------FVEQVDEIFAACTHPRVQRAMFSATMLEGVEELAQTVLRDPVKVAVG------TKN-----AGASTIDQKLVFVGKEEGKLVAMKQLLQEGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNMVINYDFPQSAVSYXXXXXXXXXXXXXXXAVTFFTEDDMVY---LRTIANVMKISGCEVPDWMLSLK----KASVSKRKELLK---APPT--RHRINTVSGYDLQKANR 661          
BLAST of NO17G02230 vs. NCBI_GenBank
Match: ETP34012.1 (hypothetical protein F442_17576 [Phytophthora parasitica P10297])

HSP 1 Score: 379.8 bits (974), Expect = 2.000e-101
Identity = 243/506 (48.02%), Postives = 329/506 (65.02%), Query Frame = 0
Query:  215 MRAFRRRLRIKVTGENIPDCLPSFSLLPSLLSSSFLSXXXSSLVQTLLQNVEASHWKEPTPIQMQALPILLLGRDLLASSPTGTGKTAAFIIPTLLRLGAPISKGRPKHTKEEAAAAGGNRRGPRALFLAPTRELAAQIYREVERLSQGKKFKIGLLSKALAATRGEGGREGGVLGAYDVLVATPMRLVQVVREGGIDLGNVLSVVLDEADKLLELGREGRRDEEGHVLQPDKSFLGQVDEILAACSHPQVQRALFSATLPPLIEDLARSILRDPLSVSIGLYAASLTNNYQGGAAVPDTVTQSLLFVGREEGKLLALRQILREGVLPPVLVFLQTKERARELYHELCYDNFKVEVMHADRSPEQRAELLHKVRTGEVWVLLCTDICSRGLDLRTVNMVINYDLPSSCVAYVHXXXXXXXXXXXXXAVSFWTEGDMLEGKGLRSIANVIKLSGGDVPTWMTALKPTNSKGMGGRRKEGGREGGKGPTFRRERISTGTAWDRERAKR 721
            ++  RR+L I+V+G ++P  + SF+ +    S+S        + + LLQN+E S +KEPT +QMQA+P  LL RD+LA++PTG+GKTAAF IP L  L                AA  G   G R++ LAPTR+LA QI  E  RL+ GKK  I LLSKA AAT     +    +  +DVL+ATP+RLV +++E  +DL  V  V LDEAD+LLELG                 F+ QVDEI AAC+HP+VQRA+FSAT+   +E+LA+++LRDP+ V++G      T N     A   T+ Q L+FVG+EEGKL+A++Q+L+EG+  P L+F+Q KERA ELYHEL YD   +  +HADR+ EQR +++ + RTGEVWVL+CTD+ SRG+D + VNMVINYD P S V+Y  XXXXXXXXXXXXXAV+F+TE DM+    LR+IANV+K+SG +VP WM +LK    K    +RKE  +     PT  R RI+T + +D ++A R
Sbjct:  218 VQMLRRQLGIRVSGVSVPAPITSFADMRLDSSAS-----AQQMKRLLLQNIERSEYKEPTSVQMQAIPSFLLRRDVLATAPTGSGKTAAFAIPILANL----------------AAGSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQTKSKLAVN-HDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELG-----------------FVEQVDEIFAACTHPRVQRAMFSATMLEGVEELAQTVLRDPVKVAVG------TKN-----AGASTIDQKLVFVGKEEGKLVAMKQLLQEGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNMVINYDFPQSAVSYXXXXXXXXXXXXXXXAVTFFTEDDMVY---LRTIANVMKISGCEVPDWMLSLK----KASVSKRKELLK---APPT--RHRINTVSGYDLQKANR 661          
BLAST of NO17G02230 vs. NCBI_GenBank
Match: KUF73085.1 (ATP-dependent RNA helicase ddx52 [Phytophthora nicotianae])

HSP 1 Score: 379.8 bits (974), Expect = 2.000e-101
Identity = 243/506 (48.02%), Postives = 329/506 (65.02%), Query Frame = 0
Query:  215 MRAFRRRLRIKVTGENIPDCLPSFSLLPSLLSSSFLSXXXSSLVQTLLQNVEASHWKEPTPIQMQALPILLLGRDLLASSPTGTGKTAAFIIPTLLRLGAPISKGRPKHTKEEAAAAGGNRRGPRALFLAPTRELAAQIYREVERLSQGKKFKIGLLSKALAATRGEGGREGGVLGAYDVLVATPMRLVQVVREGGIDLGNVLSVVLDEADKLLELGREGRRDEEGHVLQPDKSFLGQVDEILAACSHPQVQRALFSATLPPLIEDLARSILRDPLSVSIGLYAASLTNNYQGGAAVPDTVTQSLLFVGREEGKLLALRQILREGVLPPVLVFLQTKERARELYHELCYDNFKVEVMHADRSPEQRAELLHKVRTGEVWVLLCTDICSRGLDLRTVNMVINYDLPSSCVAYVHXXXXXXXXXXXXXAVSFWTEGDMLEGKGLRSIANVIKLSGGDVPTWMTALKPTNSKGMGGRRKEGGREGGKGPTFRRERISTGTAWDRERAKR 721
            ++  RR+L I+V+G ++P  + SF+ +    S+S        + + LLQN+E S +KEPT +QMQA+P  LL RD+LA++PTG+GKTAAF IP L  L                AA  G   G R++ LAPTR+LA QI  E  RL+ GKK  I LLSKA AAT     +    +  +DVL+ATP+RLV +++E  +DL  V  V LDEAD+LLELG                 F+ QVDEI AAC+HP+VQRA+FSAT+   +E+LA+++LRDP+ V++G      T N     A   T+ Q L+FVG+EEGKL+A++Q+L+EG+  P L+F+Q KERA ELYHEL YD   +  +HADR+ EQR +++ + RTGEVWVL+CTD+ SRG+D + VNMVINYD P S V+Y  XXXXXXXXXXXXXAV+F+TE DM+    LR+IANV+K+SG +VP WM +LK    K    +RKE  +     PT  R RI+T + +D ++A R
Sbjct:  515 VQMLRRQLGIRVSGVSVPAPITSFADMRLDSSAS-----AQQMKRLLLQNIERSEYKEPTSVQMQAIPSFLLRRDVLATAPTGSGKTAAFAIPILANL----------------AAGSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQTKSKLAVN-HDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELG-----------------FVEQVDEIFAACTHPRVQRAMFSATMLEGVEELAQTVLRDPVKVAVG------TKN-----AGASTIDQKLVFVGKEEGKLVAMKQLLQEGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNMVINYDFPQSAVSYXXXXXXXXXXXXXXXAVTFFTEDDMVY---LRTIANVMKISGCEVPDWMLSLK----KASVSKRKELLK---APPT--RHRINTVSGYDLQKANR 958          
BLAST of NO17G02230 vs. NCBI_GenBank
Match: XP_002905243.1 (DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] >EEY53625.1 DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 379.4 bits (973), Expect = 2.600e-101
Identity = 243/506 (48.02%), Postives = 328/506 (64.82%), Query Frame = 0
Query:  215 MRAFRRRLRIKVTGENIPDCLPSFSLLPSLLSSSFLSXXXSSLVQTLLQNVEASHWKEPTPIQMQALPILLLGRDLLASSPTGTGKTAAFIIPTLLRLGAPISKGRPKHTKEEAAAAGGNRRGPRALFLAPTRELAAQIYREVERLSQGKKFKIGLLSKALAATRGEGGREGGVLGAYDVLVATPMRLVQVVREGGIDLGNVLSVVLDEADKLLELGREGRRDEEGHVLQPDKSFLGQVDEILAACSHPQVQRALFSATLPPLIEDLARSILRDPLSVSIGLYAASLTNNYQGGAAVPDTVTQSLLFVGREEGKLLALRQILREGVLPPVLVFLQTKERARELYHELCYDNFKVEVMHADRSPEQRAELLHKVRTGEVWVLLCTDICSRGLDLRTVNMVINYDLPSSCVAYVHXXXXXXXXXXXXXAVSFWTEGDMLEGKGLRSIANVIKLSGGDVPTWMTALKPTNSKGMGGRRKEGGREGGKGPTFRRERISTGTAWDRERAKR 721
            ++  RR+L I+V+G ++P  + SF+ +    S+S        + + LLQN+E S +KEPT +QMQA+P LLL RD+LA++PTG+GKTAAF IP L  L                AA  G   G R++ LAPTR+LA QI  E  RL+ GKK  I LLSKA AAT     +    +  +DVL+ATP+RLV +++E  +DL  V  V LDEAD+LLELG                 F+ QVDEI AAC+HP+VQRA+FSAT+   +E+LA+++LRDP+ V++G      T N     A   T+ Q L+FVG+EEGKL+A++Q+L++G+  P L+F+Q KERA ELYHEL YD   +  +HADR+ EQR +++ + RTGEVWVL+CTD+ SRG+D + VNMVINYD P S V+Y  XXXXXXXXXXXXXAV+ +TE DM+    LR+IANV+K+SG +VP WM +LK    K    +RK    E  K P   R RI+T + +D +RA R
Sbjct:  218 VQMLRRQLGIRVSGVSVPAPITSFADMRLDSSAS-----AQQMKRLLLQNIERSEYKEPTSVQMQAIPSLLLRRDVLATAPTGSGKTAAFAIPILANL----------------AAGSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQTKSKLAVN-HDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELG-----------------FVEQVDEIFAACTHPKVQRAMFSATMLEGVEELAQTVLRDPVKVAVG------TKN-----AGASTIDQKLVFVGKEEGKLVAMKQLLQQGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNMVINYDFPQSAVSYXXXXXXXXXXXXXXXAVTLFTEDDMVY---LRTIANVMKISGCEVPDWMLSLK----KASVSKRK----ELLKAPPM-RHRINTVSGYDLQRANR 661          
BLAST of NO17G02230 vs. NCBI_GenBank
Match: ETK76304.1 (hypothetical protein L915_17254 [Phytophthora parasitica])

HSP 1 Score: 378.6 bits (971), Expect = 4.400e-101
Identity = 242/506 (47.83%), Postives = 329/506 (65.02%), Query Frame = 0
Query:  215 MRAFRRRLRIKVTGENIPDCLPSFSLLPSLLSSSFLSXXXSSLVQTLLQNVEASHWKEPTPIQMQALPILLLGRDLLASSPTGTGKTAAFIIPTLLRLGAPISKGRPKHTKEEAAAAGGNRRGPRALFLAPTRELAAQIYREVERLSQGKKFKIGLLSKALAATRGEGGREGGVLGAYDVLVATPMRLVQVVREGGIDLGNVLSVVLDEADKLLELGREGRRDEEGHVLQPDKSFLGQVDEILAACSHPQVQRALFSATLPPLIEDLARSILRDPLSVSIGLYAASLTNNYQGGAAVPDTVTQSLLFVGREEGKLLALRQILREGVLPPVLVFLQTKERARELYHELCYDNFKVEVMHADRSPEQRAELLHKVRTGEVWVLLCTDICSRGLDLRTVNMVINYDLPSSCVAYVHXXXXXXXXXXXXXAVSFWTEGDMLEGKGLRSIANVIKLSGGDVPTWMTALKPTNSKGMGGRRKEGGREGGKGPTFRRERISTGTAWDRERAKR 721
            ++  RR+L I+V+G ++P  + SF+ +    S+S        + + LLQN+E S +KEPT +QMQA+P  LL RD+LA++PTG+GKTAAF IP L  L                AA  G   G R++ LAPTR+LA QI  E  RL+ GKK  I LLSKA AAT     +    +  +DVL+ATP+RLV +++E  +DL  V  V LDEAD+LLELG                 F+ QVDEI AAC+HP+VQRA+FSAT+   +E+LA+++LRDP+ V++G      T N     A   T+ Q L+FVG+EEGKL+A++Q+L+EG+  P L+F+Q KERA ELYHEL YD   +  +HADR+ EQR +++ + RTGEVWVL+CTD+ SRG+D + VNMVINYD P S V+Y  XXXXXXXXXXXXXAV+F+TE DM+    LR+IANV+K+SG +VP WM +L+    K    +RKE  +     PT  R RI+T + +D ++A R
Sbjct:  218 VQMLRRQLGIRVSGVSVPAPITSFADMRLDSSAS-----AQQMKRLLLQNIERSEYKEPTSVQMQAIPSFLLRRDVLATAPTGSGKTAAFAIPILANL----------------AAGSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQTKSKLAVN-HDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELG-----------------FVEQVDEIFAACTHPRVQRAMFSATMLEGVEELAQTVLRDPVKVAVG------TKN-----AGASTIDQKLVFVGKEEGKLVAMKQLLQEGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNMVINYDFPQSAVSYXXXXXXXXXXXXXXXAVTFFTEDDMVY---LRTIANVMKISGCEVPDWMLSLR----KASVSKRKELLK---APPT--RHRINTVSGYDLQKANR 661          
The following BLAST results are available for this feature:
BLAST of NO17G02230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24183.14.000e-16363.62RNA helicase, DEAD-box type [Nannochloropsis gadit... [more]
CBJ26121.12.600e-10952.65DEAD box helicase [Ectocarpus siliculosus][more]
GAY00513.11.300e-10545.17Hypothetical protein PINS_008339, partial [Pythium... [more]
XP_005855760.11.600e-10366.45putative dead box rna helicase [Nannochloropsis ga... [more]
ETI36081.12.000e-10147.68hypothetical protein F443_17720 [Phytophthora para... [more]
XP_008896209.12.000e-10148.02hypothetical protein PPTG_04135 [Phytophthora para... [more]
ETP34012.12.000e-10148.02hypothetical protein F442_17576 [Phytophthora para... [more]
KUF73085.12.000e-10148.02ATP-dependent RNA helicase ddx52 [Phytophthora nic... [more]
XP_002905243.12.600e-10148.02DEAD/DEAH box RNA helicase, putative [Phytophthora... [more]
ETK76304.14.400e-10147.83hypothetical protein L915_17254 [Phytophthora para... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003008NSK003008Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02230.1NO17G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|654178gene_7663Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100390g2gene6284Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02230.1NO17G02230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02230 ID=NO17G02230|Name=NO17G02230|organism=Nannochloropsis oceanica|type=gene|length=2253bp
ATGGACGAGCTCTTCCAAGCTCTCCGGGCCGGGACGCGGTGTAAAAAAAA
AACTGCCAAGACTTCTGCCGCGGCTGCTGCGAATGGCAATGCTGCGGCCG
CCCTCTCGGCCTCCATCTCTCCTTACAAGCACGCCTCGAAGCTTCCTTCT
TCTTCTTCGTATGCCCCTGCCGCAGTATCAACAACATCCACTTTGGATTT
CTTTCGGTCGGCCGGCGCGATCAAGGTCAAGGGTGTGGAGCAGGAGCACC
AGAAGCGAAAGAGGCCGCGGCGGGCACGTGAAGAGGACTCGGAGGAGGAC
GACGATGGAAAGGAGGAGATAAGCAAGAAGTTGCTGGTCGAAGGCCAACA
TCAGAATGGCATGAAAAGCTCATCAAATAAGAAGAAGAGGAAGAAGGGCG
CAGCTACTGCTGCCGCGAATGGTGCTGCTCCCCAAAGTGCTGCTGCCTCC
ACCTTGCAACTTTTCAACAAAGCAGATAACCAAGAGGGCACGAAGAAGGG
CGCACAGATTCCACAGGCGTCCTCGTCCTCCTCCTTTTTCGATCAAGATA
AAGACAGTGATGGAAACGATAGCGATGATTCATCCTCCCATTCCTCTTCC
TCCCCCGGTCGGCATGGCCGCACCCAAAATGACGATGATGAAATGCGCGC
CTTCCGCCGCCGGCTTCGAATCAAAGTCACCGGCGAAAACATTCCAGACT
GCCTCCCCTCCTTCTCCCTCCTCCCCTCCCTTCTCTCCTCCTCCTTTCTT
TCCTCGTCTTCCTCCTCCCTCGTCCAAACCCTCCTTCAGAACGTGGAGGC
GTCGCACTGGAAGGAACCAACTCCGATTCAGATGCAAGCCCTGCCCATCC
TCCTCCTCGGTCGCGACCTACTTGCTTCCTCCCCCACTGGCACGGGAAAG
ACGGCGGCATTCATTATCCCGACCCTCCTTCGTCTAGGGGCGCCCATAAG
CAAAGGAAGACCGAAGCACACAAAGGAAGAAGCAGCCGCAGCAGGCGGAA
ACAGGAGGGGACCTCGGGCGTTGTTTTTAGCCCCAACCCGCGAGCTCGCG
GCGCAGATATACAGGGAAGTCGAACGTCTGTCGCAAGGCAAAAAGTTCAA
AATTGGGCTCCTGTCCAAGGCCTTGGCCGCCACCAGGGGGGAGGGCGGGA
GGGAGGGAGGGGTATTGGGGGCGTACGACGTGTTGGTGGCGACCCCGATG
AGGCTGGTGCAGGTGGTGAGGGAGGGAGGGATAGACCTCGGCAATGTCCT
GTCCGTCGTGCTGGACGAGGCGGACAAGCTGCTTGAGTTGGGGAGGGAGG
GAAGGAGGGACGAGGAAGGGCATGTCTTGCAACCGGACAAGAGCTTCTTG
GGTCAAGTCGATGAGATCTTGGCCGCCTGCTCCCACCCTCAGGTGCAGCG
TGCCTTGTTCTCCGCCACCCTTCCTCCCTTGATCGAGGATTTAGCACGGT
CCATCTTACGGGACCCTCTCTCCGTCTCCATCGGCCTTTATGCCGCTTCC
CTAACCAACAACTACCAAGGAGGCGCCGCCGTGCCTGACACGGTGACACA
ATCCCTTCTGTTTGTAGGGCGAGAGGAAGGGAAACTCCTGGCCTTGCGAC
AGATTTTGCGCGAAGGTGTCCTACCCCCCGTGCTCGTGTTTCTCCAAACG
AAAGAGCGGGCGCGTGAGCTGTATCATGAATTGTGCTACGACAATTTTAA
GGTCGAGGTCATGCACGCCGACCGCAGCCCCGAGCAGCGGGCCGAATTGT
TGCATAAAGTGCGGACAGGGGAGGTTTGGGTGCTTCTCTGCACGGATATA
TGCTCCCGGGGACTGGACCTAAGGACTGTCAACATGGTGATTAATTACGA
CTTGCCCTCGTCGTGTGTAGCGTACGTGCATCGGGTGGGGAGGACAGGGA
GGGCTGGGAGGAAAGGAAGGGCGGTGAGTTTCTGGACGGAGGGGGATATG
CTGGAAGGAAAGGGCCTGCGTTCCATAGCCAATGTGATAAAATTGAGTGG
GGGGGACGTACCGACGTGGATGACAGCGTTGAAACCTACCAACAGCAAGG
GGATGGGGGGGAGACGGAAGGAGGGAGGGAGGGAGGGAGGGAAGGGGCCT
ACATTTAGACGGGAAAGGATCTCGACAGGCACGGCCTGGGATCGGGAAAG
GGCGAAGCGGAAGAGCAAGGTGTGGGGGAAGGGGAAACACATAAAGGGGG
AAGGAGGAGAGAGAGGAAGAGGAGGGGAAGAAGGAAAGAGGGGGAGTGCA
TGA
back to top

protein sequence of NO17G02230.1

>NO17G02230.1-protein ID=NO17G02230.1-protein|Name=NO17G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=751bp
MDELFQALRAGTRCKKKTAKTSAAAAANGNAAAALSASISPYKHASKLPS
SSSYAPAAVSTTSTLDFFRSAGAIKVKGVEQEHQKRKRPRRAREEDSEED
DDGKEEISKKLLVEGQHQNGMKSSSNKKKRKKGAATAAANGAAPQSAAAS
TLQLFNKADNQEGTKKGAQIPQASSSSSFFDQDKDSDGNDSDDSSSHSSS
SPGRHGRTQNDDDEMRAFRRRLRIKVTGENIPDCLPSFSLLPSLLSSSFL
SSSSSSLVQTLLQNVEASHWKEPTPIQMQALPILLLGRDLLASSPTGTGK
TAAFIIPTLLRLGAPISKGRPKHTKEEAAAAGGNRRGPRALFLAPTRELA
AQIYREVERLSQGKKFKIGLLSKALAATRGEGGREGGVLGAYDVLVATPM
RLVQVVREGGIDLGNVLSVVLDEADKLLELGREGRRDEEGHVLQPDKSFL
GQVDEILAACSHPQVQRALFSATLPPLIEDLARSILRDPLSVSIGLYAAS
LTNNYQGGAAVPDTVTQSLLFVGREEGKLLALRQILREGVLPPVLVFLQT
KERARELYHELCYDNFKVEVMHADRSPEQRAELLHKVRTGEVWVLLCTDI
CSRGLDLRTVNMVINYDLPSSCVAYVHRVGRTGRAGRKGRAVSFWTEGDM
LEGKGLRSIANVIKLSGGDVPTWMTALKPTNSKGMGGRRKEGGREGGKGP
TFRRERISTGTAWDRERAKRKSKVWGKGKHIKGEGGERGRGGEEGKRGSA
*
back to top
Synonyms
Publications