NO17G02230.1, NO17G02230.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G02230.1
Unique Name	NO17G02230.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2253
Alignment location	chr17:651235..653487 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:651235..653487 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO17G02230.1 vs.
Match: EWM24183.1 (RNA helicase, DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 635.6 bits (1638), Expect = 2.000e-178
Identity = 367/626 (58.63%), Postives = 448/626 (71.57%), Query Frame = 0

Query:  121 MKSSSNKKKRKKGAATAAANGAAPQSAAASTLQLFNKADNQEGTKKGAQIPQASSSSSFFDQDKDSDGNDSDDSSSHSSSSPGRHGRTQNDDDEMRAFRRRLRIKVTGENIPDCLPSFSLLPSLLSSSFLSSSSSSLVQTLLQNVEASHWKEPTPIQMQALPILLLGRDLLASSPTGTGKTAAFIIPTLLRLGAPISKGRPKHTKEEAAAAGGNRRGPRALFLAPTRELAAQIYREVERLSQGKKFKIGLLSKALAATRGEGGREGGVLGAYDVLVATPMRLVQVVREGGIDLGNVLSVVLDEADKLLELGREGRRDEEGHVLQPDKSFLGQVDEILAACSHPQVQRALFSATLPPLIEDLARSILRDPLSVSIGLYAASLTNNYQGGAAVPDTVTQSLLFVGREEGKLLALRQILREGVLPPVLVFLQTKERARELYHELCYDNFKVEVMHADRSPEQRAELLHKVRTGEVWVLLCTDICSRGLDLRTVNMVINYDLPSSCVAYVHRVGRTGRAGRKGRAVSFWTEGDMLEGKGLRSIANVIKLSGGDVPTWMTALKPTNSKGMGGRRKEGGREGGKGPTFRRERISTGTAWDRERAKRKSKVWGKGKHIKGEGGERGRGGEEGK 747
            +++ +  KK  +  A AAAN         ++L L + + +  G          S++  FF      D    +          GR G  ++++DEMRAFRRRLRIK  GEN+PDCLPSFSLLP            +SL +TLL+N+E+S WKEPTPIQMQALP+L +GRDLLA++PTG+GKTAAF++PTLLRL              E A A   R GPRAL LAPTRELA+QI  EV+RL+ G+ FK+ ++SKALAAT+ E G+  GV   YD+LVATPMRL+Q +REG +DL  V +VVLDEADKL ELGREG+++  G  L+PDKSFLGQVDEILAAC++P+VQRALFSATLPPLI+DLA S+LRDP+SVS+GL   S  +NY   AAVP++VTQ L+FVGREEGKLLALRQ+L++GVLPP+LVFL+ KERARELYHELCYD+ +V+VMHADRS EQRA LL KVR G VWVLLCTD+C+RGLDLR VN+V+NYDLP SCV YVHRVGRTGRAGR GRAV+FWTE DM EG  LR+IANVIKLSGG VP+WM  LK    KG   + +EGGREGG+G    R RIST TAWD E+AKR+            EG  +G GG + K
Sbjct:    8 LRAGTKFKKTSQPGACAAAN---KHHGTRTSLSLSSPSLSTCGPPTNTNTSSPSAALDFFRSAALPD----EQKKKRPRGGGGRMGE-KHEEDEMRAFRRRLRIKARGENVPDCLPSFSLLPC---------PDASLKRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRL--------------EKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDEAGQ--GVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGL--PSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAVWVLLCTDLCARGLDLRAVNVVVNYDLPPSCVTYVHRVGRTGRAGRAGRAVTFWTERDMEEGGSLRAIANVIKLSGGQVPSWMAGLK----KGGKKKGREGGREGGRG----RGRISTRTAWDVEKAKRRK-----------EGRAQGGGGMKKK 579

The following BLAST results are available for this feature:

BLAST of NO17G02230.1 vs.

BLAST of NO17G02230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24183.1	2.000e-178	58.63	RNA helicase, DEAD-box type [Nannochloropsis gadit...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G02230	NO17G02230	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G02230.1	NO17G02230.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G02230.1.cds1	NO17G02230.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:651235..653487-
coding sequence from alignment at chr17:651235..653487-

mRNA sequence

>NO17G02230.1 ID=NO17G02230.1|Name=NO17G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2253bp
ATGGACGAGCTCTTCCAAGCTCTCCGGGCCGGGACGCGGTGTAAAAAAAA
AACTGCCAAGACTTCTGCCGCGGCTGCTGCGAATGGCAATGCTGCGGCCG
CCCTCTCGGCCTCCATCTCTCCTTACAAGCACGCCTCGAAGCTTCCTTCT
TCTTCTTCGTATGCCCCTGCCGCAGTATCAACAACATCCACTTTGGATTT
CTTTCGGTCGGCCGGCGCGATCAAGGTCAAGGGTGTGGAGCAGGAGCACC
AGAAGCGAAAGAGGCCGCGGCGGGCACGTGAAGAGGACTCGGAGGAGGAC
GACGATGGAAAGGAGGAGATAAGCAAGAAGTTGCTGGTCGAAGGCCAACA
TCAGAATGGCATGAAAAGCTCATCAAATAAGAAGAAGAGGAAGAAGGGCG
CAGCTACTGCTGCCGCGAATGGTGCTGCTCCCCAAAGTGCTGCTGCCTCC
ACCTTGCAACTTTTCAACAAAGCAGATAACCAAGAGGGCACGAAGAAGGG
CGCACAGATTCCACAGGCGTCCTCGTCCTCCTCCTTTTTCGATCAAGATA
AAGACAGTGATGGAAACGATAGCGATGATTCATCCTCCCATTCCTCTTCC
TCCCCCGGTCGGCATGGCCGCACCCAAAATGACGATGATGAAATGCGCGC
CTTCCGCCGCCGGCTTCGAATCAAAGTCACCGGCGAAAACATTCCAGACT
GCCTCCCCTCCTTCTCCCTCCTCCCCTCCCTTCTCTCCTCCTCCTTTCTT
TCCTCGTCTTCCTCCTCCCTCGTCCAAACCCTCCTTCAGAACGTGGAGGC
GTCGCACTGGAAGGAACCAACTCCGATTCAGATGCAAGCCCTGCCCATCC
TCCTCCTCGGTCGCGACCTACTTGCTTCCTCCCCCACTGGCACGGGAAAG
ACGGCGGCATTCATTATCCCGACCCTCCTTCGTCTAGGGGCGCCCATAAG
CAAAGGAAGACCGAAGCACACAAAGGAAGAAGCAGCCGCAGCAGGCGGAA
ACAGGAGGGGACCTCGGGCGTTGTTTTTAGCCCCAACCCGCGAGCTCGCG
GCGCAGATATACAGGGAAGTCGAACGTCTGTCGCAAGGCAAAAAGTTCAA
AATTGGGCTCCTGTCCAAGGCCTTGGCCGCCACCAGGGGGGAGGGCGGGA
GGGAGGGAGGGGTATTGGGGGCGTACGACGTGTTGGTGGCGACCCCGATG
AGGCTGGTGCAGGTGGTGAGGGAGGGAGGGATAGACCTCGGCAATGTCCT
GTCCGTCGTGCTGGACGAGGCGGACAAGCTGCTTGAGTTGGGGAGGGAGG
GAAGGAGGGACGAGGAAGGGCATGTCTTGCAACCGGACAAGAGCTTCTTG
GGTCAAGTCGATGAGATCTTGGCCGCCTGCTCCCACCCTCAGGTGCAGCG
TGCCTTGTTCTCCGCCACCCTTCCTCCCTTGATCGAGGATTTAGCACGGT
CCATCTTACGGGACCCTCTCTCCGTCTCCATCGGCCTTTATGCCGCTTCC
CTAACCAACAACTACCAAGGAGGCGCCGCCGTGCCTGACACGGTGACACA
ATCCCTTCTGTTTGTAGGGCGAGAGGAAGGGAAACTCCTGGCCTTGCGAC
AGATTTTGCGCGAAGGTGTCCTACCCCCCGTGCTCGTGTTTCTCCAAACG
AAAGAGCGGGCGCGTGAGCTGTATCATGAATTGTGCTACGACAATTTTAA
GGTCGAGGTCATGCACGCCGACCGCAGCCCCGAGCAGCGGGCCGAATTGT
TGCATAAAGTGCGGACAGGGGAGGTTTGGGTGCTTCTCTGCACGGATATA
TGCTCCCGGGGACTGGACCTAAGGACTGTCAACATGGTGATTAATTACGA
CTTGCCCTCGTCGTGTGTAGCGTACGTGCATCGGGTGGGGAGGACAGGGA
GGGCTGGGAGGAAAGGAAGGGCGGTGAGTTTCTGGACGGAGGGGGATATG
CTGGAAGGAAAGGGCCTGCGTTCCATAGCCAATGTGATAAAATTGAGTGG
GGGGGACGTACCGACGTGGATGACAGCGTTGAAACCTACCAACAGCAAGG
GGATGGGGGGGAGACGGAAGGAGGGAGGGAGGGAGGGAGGGAAGGGGCCT
ACATTTAGACGGGAAAGGATCTCGACAGGCACGGCCTGGGATCGGGAAAG
GGCGAAGCGGAAGAGCAAGGTGTGGGGGAAGGGGAAACACATAAAGGGGG
AAGGAGGAGAGAGAGGAAGAGGAGGGGAAGAAGGAAAGAGGGGGAGTGCA
TGA

protein sequence of NO17G02230.1

>NO17G02230.1-protein ID=NO17G02230.1-protein|Name=NO17G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=751bp
MDELFQALRAGTRCKKKTAKTSAAAAANGNAAAALSASISPYKHASKLPS
SSSYAPAAVSTTSTLDFFRSAGAIKVKGVEQEHQKRKRPRRAREEDSEED
DDGKEEISKKLLVEGQHQNGMKSSSNKKKRKKGAATAAANGAAPQSAAAS
TLQLFNKADNQEGTKKGAQIPQASSSSSFFDQDKDSDGNDSDDSSSHSSS
SPGRHGRTQNDDDEMRAFRRRLRIKVTGENIPDCLPSFSLLPSLLSSSFL
SSSSSSLVQTLLQNVEASHWKEPTPIQMQALPILLLGRDLLASSPTGTGK
TAAFIIPTLLRLGAPISKGRPKHTKEEAAAAGGNRRGPRALFLAPTRELA
AQIYREVERLSQGKKFKIGLLSKALAATRGEGGREGGVLGAYDVLVATPM
RLVQVVREGGIDLGNVLSVVLDEADKLLELGREGRRDEEGHVLQPDKSFL
GQVDEILAACSHPQVQRALFSATLPPLIEDLARSILRDPLSVSIGLYAAS
LTNNYQGGAAVPDTVTQSLLFVGREEGKLLALRQILREGVLPPVLVFLQT
KERARELYHELCYDNFKVEVMHADRSPEQRAELLHKVRTGEVWVLLCTDI
CSRGLDLRTVNMVINYDLPSSCVAYVHRVGRTGRAGRKGRAVSFWTEGDM
LEGKGLRSIANVIKLSGGDVPTWMTALKPTNSKGMGGRRKEGGREGGKGP
TFRRERISTGTAWDRERAKRKSKVWGKGKHIKGEGGERGRGGEEGKRGSA
*

mRNA from alignment at chr17:651235..653487-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G02230.1 ID=NO17G02230.1|Name=NO17G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2253bp|location=Sequence derived from alignment at chr17:651235..653487- (Nannochloropsis oceanica)
ATGGACGAGCTCTTCCAAGCTCTCCGGGCCGGGACGCGGTGTAAAAAAAA
AACTGCCAAGACTTCTGCCGCGGCTGCTGCGAATGGCAATGCTGCGGCCG
CCCTCTCGGCCTCCATCTCTCCTTACAAGCACGCCTCGAAGCTTCCTTCT
TCTTCTTCGTATGCCCCTGCCGCAGTATCAACAACATCCACTTTGGATTT
CTTTCGGTCGGCCGGCGCGATCAAGGTCAAGGGTGTGGAGCAGGAGCACC
AGAAGCGAAAGAGGCCGCGGCGGGCACGTGAAGAGGACTCGGAGGAGGAC
GACGATGGAAAGGAGGAGATAAGCAAGAAGTTGCTGGTCGAAGGCCAACA
TCAGAATGGCATGAAAAGCTCATCAAATAAGAAGAAGAGGAAGAAGGGCG
CAGCTACTGCTGCCGCGAATGGTGCTGCTCCCCAAAGTGCTGCTGCCTCC
ACCTTGCAACTTTTCAACAAAGCAGATAACCAAGAGGGCACGAAGAAGGG
CGCACAGATTCCACAGGCGTCCTCGTCCTCCTCCTTTTTCGATCAAGATA
AAGACAGTGATGGAAACGATAGCGATGATTCATCCTCCCATTCCTCTTCC
TCCCCCGGTCGGCATGGCCGCACCCAAAATGACGATGATGAAATGCGCGC
CTTCCGCCGCCGGCTTCGAATCAAAGTCACCGGCGAAAACATTCCAGACT
GCCTCCCCTCCTTCTCCCTCCTCCCCTCCCTTCTCTCCTCCTCCTTTCTT
TCCTCGTCTTCCTCCTCCCTCGTCCAAACCCTCCTTCAGAACGTGGAGGC
GTCGCACTGGAAGGAACCAACTCCGATTCAGATGCAAGCCCTGCCCATCC
TCCTCCTCGGTCGCGACCTACTTGCTTCCTCCCCCACTGGCACGGGAAAG
ACGGCGGCATTCATTATCCCGACCCTCCTTCGTCTAGGGGCGCCCATAAG
CAAAGGAAGACCGAAGCACACAAAGGAAGAAGCAGCCGCAGCAGGCGGAA
ACAGGAGGGGACCTCGGGCGTTGTTTTTAGCCCCAACCCGCGAGCTCGCG
GCGCAGATATACAGGGAAGTCGAACGTCTGTCGCAAGGCAAAAAGTTCAA
AATTGGGCTCCTGTCCAAGGCCTTGGCCGCCACCAGGGGGGAGGGCGGGA
GGGAGGGAGGGGTATTGGGGGCGTACGACGTGTTGGTGGCGACCCCGATG
AGGCTGGTGCAGGTGGTGAGGGAGGGAGGGATAGACCTCGGCAATGTCCT
GTCCGTCGTGCTGGACGAGGCGGACAAGCTGCTTGAGTTGGGGAGGGAGG
GAAGGAGGGACGAGGAAGGGCATGTCTTGCAACCGGACAAGAGCTTCTTG
GGTCAAGTCGATGAGATCTTGGCCGCCTGCTCCCACCCTCAGGTGCAGCG
TGCCTTGTTCTCCGCCACCCTTCCTCCCTTGATCGAGGATTTAGCACGGT
CCATCTTACGGGACCCTCTCTCCGTCTCCATCGGCCTTTATGCCGCTTCC
CTAACCAACAACTACCAAGGAGGCGCCGCCGTGCCTGACACGGTGACACA
ATCCCTTCTGTTTGTAGGGCGAGAGGAAGGGAAACTCCTGGCCTTGCGAC
AGATTTTGCGCGAAGGTGTCCTACCCCCCGTGCTCGTGTTTCTCCAAACG
AAAGAGCGGGCGCGTGAGCTGTATCATGAATTGTGCTACGACAATTTTAA
GGTCGAGGTCATGCACGCCGACCGCAGCCCCGAGCAGCGGGCCGAATTGT
TGCATAAAGTGCGGACAGGGGAGGTTTGGGTGCTTCTCTGCACGGATATA
TGCTCCCGGGGACTGGACCTAAGGACTGTCAACATGGTGATTAATTACGA
CTTGCCCTCGTCGTGTGTAGCGTACGTGCATCGGGTGGGGAGGACAGGGA
GGGCTGGGAGGAAAGGAAGGGCGGTGAGTTTCTGGACGGAGGGGGATATG
CTGGAAGGAAAGGGCCTGCGTTCCATAGCCAATGTGATAAAATTGAGTGG
GGGGGACGTACCGACGTGGATGACAGCGTTGAAACCTACCAACAGCAAGG
GGATGGGGGGGAGACGGAAGGAGGGAGGGAGGGAGGGAGGGAAGGGGCCT
ACATTTAGACGGGAAAGGATCTCGACAGGCACGGCCTGGGATCGGGAAAG
GGCGAAGCGGAAGAGCAAGGTGTGGGGGAAGGGGAAACACATAAAGGGGG
AAGGAGGAGAGAGAGGAAGAGGAGGGGAAGAAGGAAAGAGGGGGAGTGCA
TGA

Coding sequence (CDS) from alignment at chr17:651235..653487-

>NO17G02230.1 ID=NO17G02230.1|Name=NO17G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=2253bp|location=Sequence derived from alignment at chr17:651235..653487- (Nannochloropsis oceanica)
ATGGACGAGCTCTTCCAAGCTCTCCGGGCCGGGACGCGGTGTAAAAAAAA
AACTGCCAAGACTTCTGCCGCGGCTGCTGCGAATGGCAATGCTGCGGCCG
CCCTCTCGGCCTCCATCTCTCCTTACAAGCACGCCTCGAAGCTTCCTTCT
TCTTCTTCGTATGCCCCTGCCGCAGTATCAACAACATCCACTTTGGATTT
CTTTCGGTCGGCCGGCGCGATCAAGGTCAAGGGTGTGGAGCAGGAGCACC
AGAAGCGAAAGAGGCCGCGGCGGGCACGTGAAGAGGACTCGGAGGAGGAC
GACGATGGAAAGGAGGAGATAAGCAAGAAGTTGCTGGTCGAAGGCCAACA
TCAGAATGGCATGAAAAGCTCATCAAATAAGAAGAAGAGGAAGAAGGGCG
CAGCTACTGCTGCCGCGAATGGTGCTGCTCCCCAAAGTGCTGCTGCCTCC
ACCTTGCAACTTTTCAACAAAGCAGATAACCAAGAGGGCACGAAGAAGGG
CGCACAGATTCCACAGGCGTCCTCGTCCTCCTCCTTTTTCGATCAAGATA
AAGACAGTGATGGAAACGATAGCGATGATTCATCCTCCCATTCCTCTTCC
TCCCCCGGTCGGCATGGCCGCACCCAAAATGACGATGATGAAATGCGCGC
CTTCCGCCGCCGGCTTCGAATCAAAGTCACCGGCGAAAACATTCCAGACT
GCCTCCCCTCCTTCTCCCTCCTCCCCTCCCTTCTCTCCTCCTCCTTTCTT
TCCTCGTCTTCCTCCTCCCTCGTCCAAACCCTCCTTCAGAACGTGGAGGC
GTCGCACTGGAAGGAACCAACTCCGATTCAGATGCAAGCCCTGCCCATCC
TCCTCCTCGGTCGCGACCTACTTGCTTCCTCCCCCACTGGCACGGGAAAG
ACGGCGGCATTCATTATCCCGACCCTCCTTCGTCTAGGGGCGCCCATAAG
CAAAGGAAGACCGAAGCACACAAAGGAAGAAGCAGCCGCAGCAGGCGGAA
ACAGGAGGGGACCTCGGGCGTTGTTTTTAGCCCCAACCCGCGAGCTCGCG
GCGCAGATATACAGGGAAGTCGAACGTCTGTCGCAAGGCAAAAAGTTCAA
AATTGGGCTCCTGTCCAAGGCCTTGGCCGCCACCAGGGGGGAGGGCGGGA
GGGAGGGAGGGGTATTGGGGGCGTACGACGTGTTGGTGGCGACCCCGATG
AGGCTGGTGCAGGTGGTGAGGGAGGGAGGGATAGACCTCGGCAATGTCCT
GTCCGTCGTGCTGGACGAGGCGGACAAGCTGCTTGAGTTGGGGAGGGAGG
GAAGGAGGGACGAGGAAGGGCATGTCTTGCAACCGGACAAGAGCTTCTTG
GGTCAAGTCGATGAGATCTTGGCCGCCTGCTCCCACCCTCAGGTGCAGCG
TGCCTTGTTCTCCGCCACCCTTCCTCCCTTGATCGAGGATTTAGCACGGT
CCATCTTACGGGACCCTCTCTCCGTCTCCATCGGCCTTTATGCCGCTTCC
CTAACCAACAACTACCAAGGAGGCGCCGCCGTGCCTGACACGGTGACACA
ATCCCTTCTGTTTGTAGGGCGAGAGGAAGGGAAACTCCTGGCCTTGCGAC
AGATTTTGCGCGAAGGTGTCCTACCCCCCGTGCTCGTGTTTCTCCAAACG
AAAGAGCGGGCGCGTGAGCTGTATCATGAATTGTGCTACGACAATTTTAA
GGTCGAGGTCATGCACGCCGACCGCAGCCCCGAGCAGCGGGCCGAATTGT
TGCATAAAGTGCGGACAGGGGAGGTTTGGGTGCTTCTCTGCACGGATATA
TGCTCCCGGGGACTGGACCTAAGGACTGTCAACATGGTGATTAATTACGA
CTTGCCCTCGTCGTGTGTAGCGTACGTGCATCGGGTGGGGAGGACAGGGA
GGGCTGGGAGGAAAGGAAGGGCGGTGAGTTTCTGGACGGAGGGGGATATG
CTGGAAGGAAAGGGCCTGCGTTCCATAGCCAATGTGATAAAATTGAGTGG
GGGGGACGTACCGACGTGGATGACAGCGTTGAAACCTACCAACAGCAAGG
GGATGGGGGGGAGACGGAAGGAGGGAGGGAGGGAGGGAGGGAAGGGGCCT
ACATTTAGACGGGAAAGGATCTCGACAGGCACGGCCTGGGATCGGGAAAG
GGCGAAGCGGAAGAGCAAGGTGTGGGGGAAGGGGAAACACATAAAGGGGG
AAGGAGGAGAGAGAGGAAGAGGAGGGGAAGAAGGAAAGAGGGGGAGTGCA
TGA

Synonyms

Publications