NO17G02130, NO17G02130 (gene) Nannochloropsis oceanica

Overview
NameNO17G02130
Unique NameNO17G02130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2196
Alignment locationchr17:618154..620349 -

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Properties
Property NameValue
Descriptionalpha/beta-Hydrolases superfamily protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:618154..620349 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR000073AB_hydrolase_1
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO17G02130 vs. NCBI_GenBank
Match: XP_002297067.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED86795.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 68.6 bits (166), Expect = 8.600e-8
Identity = 89/375 (23.73%), Postives = 142/375 (37.87%), Query Frame = 0
Query:  303 PSLPPSSSPTNIFFVHCNHGFGANSLSYEPVLESLSSTLGQQFPTLAAAHDAPGFGLSESPAEMEDGGGQEEEGLYSFEN------------------NARLGGRLMAALGEEGGREERGEEQHVYIGHSMGSLTSAHMALNKLESQDEEARGREESLEKXXXXXXXXXXXXXXXXXXXXIMPMRRSPSRLPPTGQTFLPRLFPARLLRFIFSKTGPVAHSLLLVLTSFFL---------RSLCYSEKFWRDGLGVAWGVGGPPTSLTLAHYRLPSLKEGWERGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGRLKVLIIHGTKDRVVAMENSRRLAIAMK-EGGKGVVEVVEIEGVGHVPHEE 650
            P++     P +  ++H  HGFGA+SLS+ PVL SL + L  +   +  AHD PGFG ++ P + +  GG E+   Y F N                                   +     +Q    GHSMG+ ++  MAL+  E Q                                  +P  +  S+       F  ++  + +  FI  K     HSL +     FL         R +  +++FWR+GL +AWG     +   +  ++ PS+ +GWE GL                                         KV+I++G+ DRVV ++     A+A K +     ++VV +EG+GH P EE
Sbjct:  290 PNINTKRQPLDAIYLH--HGFGASSLSWLPVLPSLVNRLNAR---VGIAHDTPGFGFTDRP-DPDVVGGLEQ---YGFGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKATTDAKQVAIFGHSMGAKSALLMALSSHEMQ-----------------WKPKLVVLVAPAVEGVALPPLKGRSKASSIDPPFANKM--SGMSGFIKRK----LHSLWVGWRKIFLDYPFRYGLKRLVSGNKQFWREGLSLAWGDSNRLSESDVLRFQWPSIGKGWESGLMAFTRSRLSLGSSSIPDDGQLLKEVASL----------SDTKVVIVYGSNDRVVQIDG----AVAEKIKREYPSIKVVRMEGMGHDPFEE 618          
BLAST of NO17G02130 vs. NCBI_GenBank
Match: PSC74181.1 (stAR-related lipid transfer mitochondrial-like [Micractinium conductrix])

HSP 1 Score: 68.6 bits (166), Expect = 8.600e-8
Identity = 48/149 (32.21%), Postives = 59/149 (39.60%), Query Frame = 0
Query:  515 LRSLCYSEKFWRDGLGVAWGVGGPPTSLTLAHYRLPSLKEGWERGL--SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGRLKVLIIHGTKDRVVAMENSRRLAIAMKEGGKGVVEVVEIEGVGHVPHEEVPGRFVETVVEF 662
            LR L  S +FW  GL  AW  G   T   +  YR   L  GWE G+                                      +   +KVLI+HG  D +V   NSRRLA  +        E+V  E  GH+P EE P RFV+TV  F
Sbjct: 1071 LRRLIRSRRFWERGLASAWHDGRRVTRDYVNAYRSGQLVRGWEGGILRFLSARFAEKHGFWGSLREAVQGDGHLTQAERLARAIKRHNIKVLIVHGASDALVPCANSRRLAALLPN-----AELVVFEKCGHMPQEECPERFVQTVQRF 1214          
BLAST of NO17G02130 vs. NCBI_GenBank
Match: XP_005706159.1 (hydrolase, alpha/beta fold family protein [Galdieria sulphuraria] >EME29639.1 hydrolase, alpha/beta fold family protein [Galdieria sulphuraria])

HSP 1 Score: 66.6 bits (161), Expect = 3.300e-7
Identity = 85/360 (23.61%), Postives = 125/360 (34.72%), Query Frame = 0
Query:  321 HGFGANSLSYEPVLESLSSTLGQQFPTLAAAHDAPGFGLSESPAEMEDGGGQEEEGLYSFENNARLGGRLMAALGEEGGREERGEEQHVYIGHSMGSLTSAHMAL------------------NKLESQDEEARGREESLEKXXXXXXXXXXXXXXXXXXXXIMPMRRSPSRLPPTGQTFLPRLFPARLLRFIFSKTGPVAHSLLLVLTSFFLRSLCYSEKFWRDGLGVAWGVGGPPTSLTLAHYRLPSLKEGWERGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGRLKVLIIHGTKDRVVAMENSRRLAIAMKEGGKGVVEVVEIEGVGHVPHEEVPGRFVETVVEFV 663
            HGFG+   +Y     +L    G+Q        D P FG S  P  ME          YS      L    M  L       + G   HV +GHSMG LT+A  +L                  N   S+  ++   E S  +                                      L R+F   L+R IF +   +A  ++  +  F L  L   E FW+ GL +AW      T   +  YRLP+L + W+RG                                      +  + +L+IHG +DR++ +E S +LA  + +       +V I   GHVP EE P R    + +F+
Sbjct:  166 HGFGSWLYTY----HALWGAYGKQLDCALIGFDRPAFGFSSRPRNME---------YYSQHFAVYLVHFFMDRL------SQLGISNHVIVGHSMGGLTAALASLKYPQRVKALILIAAAIPINPPSSKSNDSGSVESSTGRMDSVHVVVWKSLHWVGLLV-----------------VTLIRIFRNGLIR-IFVR---LAALVIQPVMYFSLSLLVSQEMFWKRGLAMAWYSIEKLTDKVIEQYRLPTLVKDWQRGF--------IKFVFANRNKTPFYSSSSLEEQDIVDQLSKSNIPILLIHGKEDRIIPLERSLQLAANIPQ-----ARLVTIPHCGHVPQEEQPERVYNVIRQFL 472          
BLAST of NO17G02130 vs. NCBI_GenBank
Match: OEU20567.1 (alpha/beta-hydrolase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 66.2 bits (160), Expect = 4.300e-7
Identity = 82/353 (23.23%), Postives = 133/353 (37.68%), Query Frame = 0
Query:  317 VHCNHGFGANSLSYEPVLESLSSTLGQQFPTLAAAHDAPGFGLSESPAEMEDGGGQEEEGLYSFENNARLGGR-LMAALGEEGGREERGEEQHV----YIGHSMGSLTSAHMALNKLESQDEEARGREESLEKXXXXXXXXXXXXXXXXXXXXIMPMRRSPSRLPPTGQTFLPRLFPARLLRFIFSKTGPVAHSLLLVLTSFFLRSLCYSEKFWRDGLGVAWGVGGPPTSLTLAHYRLPSLKEGWERGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGRLKVLIIHGTKDRVVAMENSRRLAIAMK--EGGKGVVEVVEIEGVGHVPHEEVPGRFVETVVEFV 663
            ++  HGFGA+SLS+ P+   L+  LG +    A  HDA GFG ++ P         ++   Y+ + +A +  + L+  +  +           V     +GHSMGSL+   +A     +  +                                 P     SR  P+ +T  P+ +  R  R +      + H + L +T + LR    ++  WR GL +A+G     T   +  Y  PS+  GWE GL                                         KV+II G+KD++V  +   +    +K     + VV ++E+EG+GH   EE    F   V E V
Sbjct:  185 IYFQHGFGASSLSWLPLFAPLAHKLGAR---TALGHDAVGFGFTDRP---------KDTRWYTSKQSASIAQQILLQNIAADANNXXXXXXXXVLPVALVGHSMGSLSILRLATQLPHNMPK---------------------------LIILSSPALGLLSRKKPSNKT-SPQSWMGRRRRDV---GFAIQHRVTLPITRYILRRAVGTKNSWRTGLSLAYGNKNTVTDSDVLRYAWPSIGHGWEDGLLNFAAAQQMPQEDELDDDIKLMRRVLELP----------NTKVVIILGSKDKIVPSKLVYKFVENVKATTTDEVVVPIIEMEGLGHCAFEEDADAFCLKVGELV 484          
The following BLAST results are available for this feature:
BLAST of NO17G02130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
XP_002297067.18.600e-823.73predicted protein [Thalassiosira pseudonana CCMP13... [more]
PSC74181.18.600e-832.21stAR-related lipid transfer mitochondrial-like [Mi... [more]
XP_005706159.13.300e-723.61hydrolase, alpha/beta fold family protein [Galdier... [more]
OEU20567.14.300e-723.23alpha/beta-hydrolase [Fragilariopsis cylindrus CCM... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002996NSK002996Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02130.1NO17G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|165776gene_7674Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100253g8gene6273Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02130.1NO17G02130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02130 ID=NO17G02130|Name=NO17G02130|organism=Nannochloropsis oceanica|type=gene|length=2196bp
AACCATAAGAACAGGGAGCATTGATTCATGCCAAGATGTCATCAGAAATG
TTTCCTGGCCGTCATCGTTACATCAGCGCAAGGCCGTCACTAATCCTCTG
TCTCATTACGCTCGTCTCCTTCCCAATGACCGCAAGCACCTCGCTGTTCA
TCCCCACTACTGTAAGCGCCATGGTTTTGCTGCAGCGGCCTTTCTCCCTC
CAAAGTATGTGTCTCGCACGAAAACTGTCTCTGTCACCCACTCCTTTTTC
AAACACCATGCTTTTCAATCGTTGTGGCGGCGGCATCAGTAGCAGCAGCC
CCAATCTGGCGGCGTCTTCTCGCTCGTCCAACACCCGCCTCTACAGCAGT
GCCTCAGCCCCCGTACCCCTCTCCTCCCCCCCTCCTGCTTCCTCTTCAAC
CTCTACCCCGTCTATCTGCGGGTCTGCCTCTGAAATCATTCTCTCAGACG
GGCGTGCCCTTACACTTAACTTCCGACCCCGCTCATGGTTTAGCCGCTTG
TTTGCCTACAGTACAGCTGCGTTGCTCGCGGTGGGTCGACGGAAGTTTTT
GCCGTTCTCCCCTAAATTCAGGTGGCATTTCAAGGCCTTAGAAAAGGTAG
CACATCCTCGTCTTGCCGGAGGGTTGTTCATGGTGCTATTCGTATTGATG
GAAGCGTATGTGTACATGATTCCATTGAGACAAGTGCAGTTACAGAGCTT
CTTTCTACCCGAGGTGGTGCCGGCGGAGAAGTTGGGACTACCCGCATCAC
GCTTTATGCCGGTTTTGAGGAGGGAAAAGAGGAACAGTAGCGTTGGACGT
CTTACACCTGCTGCTGCTTCTGATGCTGCCGCTTCCTCCACCTCCGCATT
TGCCTCTCCTTTCGCCCAATCTACTGCTCCTGCTTCGAAACCCAGCCAAA
CAAGCCACCTCAAACTCCACGCCCTCGTCCATCGTCATCGGCCCTCCCTC
CCCCCATCTTCCTCTCCAACCAATATTTTTTTTGTCCATTGCAACCATGG
TTTTGGCGCCAATTCTCTCTCATACGAGCCTGTCCTCGAGTCCCTCTCTT
CTACTCTCGGTCAACAATTTCCTACTCTTGCTGCTGCCCACGACGCGCCT
GGTTTCGGTCTTAGTGAGTCACCAGCGGAGATGGAGGACGGGGGAGGACA
AGAGGAAGAAGGGTTATATTCATTCGAAAACAATGCGAGGTTAGGAGGGA
GGTTGATGGCGGCGTTGGGGGAGGAGGGAGGGAGGGAGGAAAGGGGGGAG
GAGCAGCATGTCTACATAGGGCATTCAATGGGTAGTCTAACTTCCGCACA
CATGGCCTTGAACAAACTCGAGAGCCAAGACGAAGAGGCCAGAGGGAGGG
AGGAATCATTGGAAAAAGGGCGAGGTACTCCTTCTCCCCCTCCTCCACCA
GTAATCCTCATCTTGGTGGCCCCGGCCATCATGCCAATGCGTCGTTCTCC
CTCCCGTCTTCCCCCCACCGGGCAGACCTTCCTCCCTCGGCTCTTCCCTG
CGCGTCTCCTCCGATTCATCTTCTCCAAAACTGGCCCTGTGGCCCACTCC
CTCCTCCTCGTCCTCACCTCTTTCTTTCTTCGTTCCCTCTGTTATTCCGA
GAAGTTTTGGAGGGATGGGTTAGGAGTGGCGTGGGGGGTGGGAGGGCCTC
CCACCTCCTTGACTCTGGCTCACTATCGACTGCCAAGCCTGAAGGAGGGG
TGGGAGAGGGGATTGAGTCGCTTTCTGCTTGCCCCGCTATTCGCTGGAAG
GAGGAATGGAGGGAGAGAAGGAGGAAAGGAAGGGGAGGAAAGAGGGTTGG
TAAAGGCGCTGGCGGAGAGGGTGAGGGAGGGGAGATTAAAGGTTTTGATT
ATACATGGCACGAAGGACCGAGTGGTTGCCATGGAGAATAGCAGGAGGCT
GGCCATTGCGATGAAGGAGGGAGGGAAGGGAGTGGTGGAGGTGGTGGAGA
TCGAGGGGGTGGGGCACGTGCCGCATGAAGAGGTGCCGGGTCGCTTTGTA
GAGACAGTGGTGGAATTTGTGAAGAGGGGGAGGTAGAGGGCAGCAGGTAG
CGGGTAAGGAAGAAGGGAATGTTGAAAAAATGAGAACCGATAATCGATAA
AGGACGGAGGTAAACGTGAATTGTAGACAGAACGGGATGAGGCAGAGAGA
AGATGAATTTCGGAGTATCATCGAATATATGTCATCGGGCAATTTG
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protein sequence of NO17G02130.1

>NO17G02130.1-protein ID=NO17G02130.1-protein|Name=NO17G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=667bp
MSSEMFPGRHRYISARPSLILCLITLVSFPMTASTSLFIPTTVSAMVLLQ
RPFSLQSMCLARKLSLSPTPFSNTMLFNRCGGGISSSSPNLAASSRSSNT
RLYSSASAPVPLSSPPPASSSTSTPSICGSASEIILSDGRALTLNFRPRS
WFSRLFAYSTAALLAVGRRKFLPFSPKFRWHFKALEKVAHPRLAGGLFMV
LFVLMEAYVYMIPLRQVQLQSFFLPEVVPAEKLGLPASRFMPVLRREKRN
SSVGRLTPAAASDAAASSTSAFASPFAQSTAPASKPSQTSHLKLHALVHR
HRPSLPPSSSPTNIFFVHCNHGFGANSLSYEPVLESLSSTLGQQFPTLAA
AHDAPGFGLSESPAEMEDGGGQEEEGLYSFENNARLGGRLMAALGEEGGR
EERGEEQHVYIGHSMGSLTSAHMALNKLESQDEEARGREESLEKGRGTPS
PPPPPVILILVAPAIMPMRRSPSRLPPTGQTFLPRLFPARLLRFIFSKTG
PVAHSLLLVLTSFFLRSLCYSEKFWRDGLGVAWGVGGPPTSLTLAHYRLP
SLKEGWERGLSRFLLAPLFAGRRNGGREGGKEGEERGLVKALAERVREGR
LKVLIIHGTKDRVVAMENSRRLAIAMKEGGKGVVEVVEIEGVGHVPHEEV
PGRFVETVVEFVKRGR*
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Synonyms
Publications