NO17G02130.1, NO17G02130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02130.1
Unique NameNO17G02130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2196
Alignment locationchr17:618154..620349 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:618154..620349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02130.1 vs.
Match: EWM24194.1 (hypothetical protein Naga_100253g8 [Nannochloropsis gaditana])

HSP 1 Score: 487.3 bits (1253), Expect = 7.800e-134
Identity = 289/594 (48.65%), Postives = 377/594 (63.47%), Query Frame = 0 
Query:   97 SSNTRLYSSASAPVPLSSPPPASSSTSTPSICGSASEIILSDGRALTLNFRPRSWFSRLFAYSTAALLAVGRRKFLPFSPKFRWHFKALEKVAHPRLAGGLFMVLFVLMEAYVYMIPLRQVQLQSFFLPEVVPAEKLGLPASRFMPVLRREKRNSSVGRLTPAAASDAAASSTSAFASPFAQSTAPASKPSQTSHLKLHALVHRHRPSLPPSSSPTNI------FFVHCNHGFGANSLSYEPVLESLSSTLGQQFPTLAAAHDAPGFGLSESPAE--MEDGGGQEEEGLYSFENNARLGGRLMAALGEEGGRE---------ERGEEQHVYIGHSMGSLTSAHMALNKLESQDEEARGREESLEKGRGTPSPPPPPVILILVAPAIMPMRRSPSRLPPTGQTFLPRLFPARLLRFIFSKTGPVAHSLLLVLTSFFLRSLCYSEKFWRDGLGVAWGVGGPPTSLTLAHYRLPSLKEGWERGLSRFLLAPLFAGRRNGGREG---GKEGEERGLVKALAERVREGRLKVLIIHGTKDRVVAMENSRRLAIAMK----EGG--KGVVEVVEIEGVGHVPHEEVPGRFVETVVEFVKR 665
            S +TRL+SS++  VPL+        +S+P++ GS   I+  DGR L+  F+PR   SR+   STA  LA+ RR  +PF  K+RWH   L    +  L   L  + FVL+EAYVY++PLRQ+QLQ F+ P +VP E L  P S+F                           + SA   P +    P+S P  +  LKLHALVHR  P L   SS +        + VHCNHGFGAN+ S+EPVL  L+  LG+  P LA AHDAPGFGL+E P E   E+G G  E  L++FE+NARLGGRLM  LG EG R+         + G E+ V++GHSMG+LTSA+MA+  ++        +E   + GR   S    PV L+++APAIMPMR+SPSRLPP G+ FL RLFP R+ R+IF KTGP   + LL LT+ FLR+LCYS+KFW DGL +AWG GGPP   T+AHYRLPSLK GWE GLSRF+LAPLFAGRR         G+ GE+  ++KALA  V+EGRL+VL++HG +DRVV + N+RRLA A++    EGG  +G VEVVE+EGVGHVPHEEVP RFV+ V++++++
Sbjct:   75 SFSTRLFSSSTNAVPLAV-------SSSPTLQGSGRGIVFPDGRVLSFGFKPRPRISRVALQSTAVFLAIARRMLVPFK-KWRWHITGLP---YSHLTSPLISLAFVLLEAYVYLVPLRQLQLQLFYAPSLVPPEMLRFPTSQF--------------------------RTLSAEDLPSSSPRLPSSPPPSSPILKLHALVHREGPGLGAPSSTSRSRSRGARYLVHCNHGFGANAFSFEPVLAPLARLLGRTHPALAVAHDAPGFGLTEVPKEGGRENGAGGGEGELFTFEHNARLGGRLMEELGREGERDGGKGMAEEADEGGERRVFLGHSMGALTSAYMAVRHVQ--------QEGGGDGGREAESGVTAPVTLVMIAPAIMPMRQSPSRLPPAGRFFLGRLFPERVARYIFRKTGPALRASLLFLTASFLRALCYSDKFWMDGLSLAWGDGGPPPPSTVAHYRLPSLKAGWEGGLSRFVLAPLFAGRRRKEEPAVGEGRNGEKGDVLKALASGVKEGRLRVLLVHGERDRVVPLSNTRRLAAALRGQVGEGGGREGGVEVVELEGVGHVPHEEVPERFVQAVMDYLRK 623
The following BLAST results are available for this feature:
BLAST of NO17G02130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24194.17.800e-13448.65hypothetical protein Naga_100253g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02130NO17G02130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02130.1NO17G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02130.1.cds1NO17G02130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02130.1 ID=NO17G02130.1|Name=NO17G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2196bp
AACCATAAGAACAGGGAGCATTGATTCATGCCAAGATGTCATCAGAAATG
TTTCCTGGCCGTCATCGTTACATCAGCGCAAGGCCGTCACTAATCCTCTG
TCTCATTACGCTCGTCTCCTTCCCAATGACCGCAAGCACCTCGCTGTTCA
TCCCCACTACTGTAAGCGCCATGGTTTTGCTGCAGCGGCCTTTCTCCCTC
CAAAGTATGTGTCTCGCACGAAAACTGTCTCTGTCACCCACTCCTTTTTC
AAACACCATGCTTTTCAATCGTTGTGGCGGCGGCATCAGTAGCAGCAGCC
CCAATCTGGCGGCGTCTTCTCGCTCGTCCAACACCCGCCTCTACAGCAGT
GCCTCAGCCCCCGTACCCCTCTCCTCCCCCCCTCCTGCTTCCTCTTCAAC
CTCTACCCCGTCTATCTGCGGGTCTGCCTCTGAAATCATTCTCTCAGACG
GGCGTGCCCTTACACTTAACTTCCGACCCCGCTCATGGTTTAGCCGCTTG
TTTGCCTACAGTACAGCTGCGTTGCTCGCGGTGGGTCGACGGAAGTTTTT
GCCGTTCTCCCCTAAATTCAGGTGGCATTTCAAGGCCTTAGAAAAGGTAG
CACATCCTCGTCTTGCCGGAGGGTTGTTCATGGTGCTATTCGTATTGATG
GAAGCGTATGTGTACATGATTCCATTGAGACAAGTGCAGTTACAGAGCTT
CTTTCTACCCGAGGTGGTGCCGGCGGAGAAGTTGGGACTACCCGCATCAC
GCTTTATGCCGGTTTTGAGGAGGGAAAAGAGGAACAGTAGCGTTGGACGT
CTTACACCTGCTGCTGCTTCTGATGCTGCCGCTTCCTCCACCTCCGCATT
TGCCTCTCCTTTCGCCCAATCTACTGCTCCTGCTTCGAAACCCAGCCAAA
CAAGCCACCTCAAACTCCACGCCCTCGTCCATCGTCATCGGCCCTCCCTC
CCCCCATCTTCCTCTCCAACCAATATTTTTTTTGTCCATTGCAACCATGG
TTTTGGCGCCAATTCTCTCTCATACGAGCCTGTCCTCGAGTCCCTCTCTT
CTACTCTCGGTCAACAATTTCCTACTCTTGCTGCTGCCCACGACGCGCCT
GGTTTCGGTCTTAGTGAGTCACCAGCGGAGATGGAGGACGGGGGAGGACA
AGAGGAAGAAGGGTTATATTCATTCGAAAACAATGCGAGGTTAGGAGGGA
GGTTGATGGCGGCGTTGGGGGAGGAGGGAGGGAGGGAGGAAAGGGGGGAG
GAGCAGCATGTCTACATAGGGCATTCAATGGGTAGTCTAACTTCCGCACA
CATGGCCTTGAACAAACTCGAGAGCCAAGACGAAGAGGCCAGAGGGAGGG
AGGAATCATTGGAAAAAGGGCGAGGTACTCCTTCTCCCCCTCCTCCACCA
GTAATCCTCATCTTGGTGGCCCCGGCCATCATGCCAATGCGTCGTTCTCC
CTCCCGTCTTCCCCCCACCGGGCAGACCTTCCTCCCTCGGCTCTTCCCTG
CGCGTCTCCTCCGATTCATCTTCTCCAAAACTGGCCCTGTGGCCCACTCC
CTCCTCCTCGTCCTCACCTCTTTCTTTCTTCGTTCCCTCTGTTATTCCGA
GAAGTTTTGGAGGGATGGGTTAGGAGTGGCGTGGGGGGTGGGAGGGCCTC
CCACCTCCTTGACTCTGGCTCACTATCGACTGCCAAGCCTGAAGGAGGGG
TGGGAGAGGGGATTGAGTCGCTTTCTGCTTGCCCCGCTATTCGCTGGAAG
GAGGAATGGAGGGAGAGAAGGAGGAAAGGAAGGGGAGGAAAGAGGGTTGG
TAAAGGCGCTGGCGGAGAGGGTGAGGGAGGGGAGATTAAAGGTTTTGATT
ATACATGGCACGAAGGACCGAGTGGTTGCCATGGAGAATAGCAGGAGGCT
GGCCATTGCGATGAAGGAGGGAGGGAAGGGAGTGGTGGAGGTGGTGGAGA
TCGAGGGGGTGGGGCACGTGCCGCATGAAGAGGTGCCGGGTCGCTTTGTA
GAGACAGTGGTGGAATTTGTGAAGAGGGGGAGGTAGAGGGCAGCAGGTAG
CGGGTAAGGAAGAAGGGAATGTTGAAAAAATGAGAACCGATAATCGATAA
AGGACGGAGGTAAACGTGAATTGTAGACAGAACGGGATGAGGCAGAGAGA
AGATGAATTTCGGAGTATCATCGAATATATGTCATCGGGCAATTTG
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protein sequence of NO17G02130.1

>NO17G02130.1-protein ID=NO17G02130.1-protein|Name=NO17G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=667bp
MSSEMFPGRHRYISARPSLILCLITLVSFPMTASTSLFIPTTVSAMVLLQ
RPFSLQSMCLARKLSLSPTPFSNTMLFNRCGGGISSSSPNLAASSRSSNT
RLYSSASAPVPLSSPPPASSSTSTPSICGSASEIILSDGRALTLNFRPRS
WFSRLFAYSTAALLAVGRRKFLPFSPKFRWHFKALEKVAHPRLAGGLFMV
LFVLMEAYVYMIPLRQVQLQSFFLPEVVPAEKLGLPASRFMPVLRREKRN
SSVGRLTPAAASDAAASSTSAFASPFAQSTAPASKPSQTSHLKLHALVHR
HRPSLPPSSSPTNIFFVHCNHGFGANSLSYEPVLESLSSTLGQQFPTLAA
AHDAPGFGLSESPAEMEDGGGQEEEGLYSFENNARLGGRLMAALGEEGGR
EERGEEQHVYIGHSMGSLTSAHMALNKLESQDEEARGREESLEKGRGTPS
PPPPPVILILVAPAIMPMRRSPSRLPPTGQTFLPRLFPARLLRFIFSKTG
PVAHSLLLVLTSFFLRSLCYSEKFWRDGLGVAWGVGGPPTSLTLAHYRLP
SLKEGWERGLSRFLLAPLFAGRRNGGREGGKEGEERGLVKALAERVREGR
LKVLIIHGTKDRVVAMENSRRLAIAMKEGGKGVVEVVEIEGVGHVPHEEV
PGRFVETVVEFVKRGR*
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mRNA from alignment at chr17:618154..620349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02130.1 ID=NO17G02130.1|Name=NO17G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2196bp|location=Sequence derived from alignment at chr17:618154..620349- (Nannochloropsis oceanica)
AACCATAAGAACAGGGAGCATTGATTCATGCCAAGATGTCATCAGAAATG
TTTCCTGGCCGTCATCGTTACATCAGCGCAAGGCCGTCACTAATCCTCTG
TCTCATTACGCTCGTCTCCTTCCCAATGACCGCAAGCACCTCGCTGTTCA
TCCCCACTACTGTAAGCGCCATGGTTTTGCTGCAGCGGCCTTTCTCCCTC
CAAAGTATGTGTCTCGCACGAAAACTGTCTCTGTCACCCACTCCTTTTTC
AAACACCATGCTTTTCAATCGTTGTGGCGGCGGCATCAGTAGCAGCAGCC
CCAATCTGGCGGCGTCTTCTCGCTCGTCCAACACCCGCCTCTACAGCAGT
GCCTCAGCCCCCGTACCCCTCTCCTCCCCCCCTCCTGCTTCCTCTTCAAC
CTCTACCCCGTCTATCTGCGGGTCTGCCTCTGAAATCATTCTCTCAGACG
GGCGTGCCCTTACACTTAACTTCCGACCCCGCTCATGGTTTAGCCGCTTG
TTTGCCTACAGTACAGCTGCGTTGCTCGCGGTGGGTCGACGGAAGTTTTT
GCCGTTCTCCCCTAAATTCAGGTGGCATTTCAAGGCCTTAGAAAAGGTAG
CACATCCTCGTCTTGCCGGAGGGTTGTTCATGGTGCTATTCGTATTGATG
GAAGCGTATGTGTACATGATTCCATTGAGACAAGTGCAGTTACAGAGCTT
CTTTCTACCCGAGGTGGTGCCGGCGGAGAAGTTGGGACTACCCGCATCAC
GCTTTATGCCGGTTTTGAGGAGGGAAAAGAGGAACAGTAGCGTTGGACGT
CTTACACCTGCTGCTGCTTCTGATGCTGCCGCTTCCTCCACCTCCGCATT
TGCCTCTCCTTTCGCCCAATCTACTGCTCCTGCTTCGAAACCCAGCCAAA
CAAGCCACCTCAAACTCCACGCCCTCGTCCATCGTCATCGGCCCTCCCTC
CCCCCATCTTCCTCTCCAACCAATATTTTTTTTGTCCATTGCAACCATGG
TTTTGGCGCCAATTCTCTCTCATACGAGCCTGTCCTCGAGTCCCTCTCTT
CTACTCTCGGTCAACAATTTCCTACTCTTGCTGCTGCCCACGACGCGCCT
GGTTTCGGTCTTAGTGAGTCACCAGCGGAGATGGAGGACGGGGGAGGACA
AGAGGAAGAAGGGTTATATTCATTCGAAAACAATGCGAGGTTAGGAGGGA
GGTTGATGGCGGCGTTGGGGGAGGAGGGAGGGAGGGAGGAAAGGGGGGAG
GAGCAGCATGTCTACATAGGGCATTCAATGGGTAGTCTAACTTCCGCACA
CATGGCCTTGAACAAACTCGAGAGCCAAGACGAAGAGGCCAGAGGGAGGG
AGGAATCATTGGAAAAAGGGCGAGGTACTCCTTCTCCCCCTCCTCCACCA
GTAATCCTCATCTTGGTGGCCCCGGCCATCATGCCAATGCGTCGTTCTCC
CTCCCGTCTTCCCCCCACCGGGCAGACCTTCCTCCCTCGGCTCTTCCCTG
CGCGTCTCCTCCGATTCATCTTCTCCAAAACTGGCCCTGTGGCCCACTCC
CTCCTCCTCGTCCTCACCTCTTTCTTTCTTCGTTCCCTCTGTTATTCCGA
GAAGTTTTGGAGGGATGGGTTAGGAGTGGCGTGGGGGGTGGGAGGGCCTC
CCACCTCCTTGACTCTGGCTCACTATCGACTGCCAAGCCTGAAGGAGGGG
TGGGAGAGGGGATTGAGTCGCTTTCTGCTTGCCCCGCTATTCGCTGGAAG
GAGGAATGGAGGGAGAGAAGGAGGAAAGGAAGGGGAGGAAAGAGGGTTGG
TAAAGGCGCTGGCGGAGAGGGTGAGGGAGGGGAGATTAAAGGTTTTGATT
ATACATGGCACGAAGGACCGAGTGGTTGCCATGGAGAATAGCAGGAGGCT
GGCCATTGCGATGAAGGAGGGAGGGAAGGGAGTGGTGGAGGTGGTGGAGA
TCGAGGGGGTGGGGCACGTGCCGCATGAAGAGGTGCCGGGTCGCTTTGTA
GAGACAGTGGTGGAATTTGTGAAGAGGGGGAGGTAGAGGGCAGCAGGTAG
CGGGTAAGGAAGAAGGGAATGTTGAAAAAATGAGAACCGATAATCGATAA
AGGACGGAGGTAAACGTGAATTGTAGACAGAACGGGATGAGGCAGAGAGA
AGATGAATTTCGGAGTATCATCGAATATATGTCATCGGGCAATTTG
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Coding sequence (CDS) from alignment at chr17:618154..620349-

>NO17G02130.1 ID=NO17G02130.1|Name=NO17G02130.1|organism=Nannochloropsis oceanica|type=CDS|length=2001bp|location=Sequence derived from alignment at chr17:618154..620349- (Nannochloropsis oceanica)
ATGTCATCAGAAATGTTTCCTGGCCGTCATCGTTACATCAGCGCAAGGCC
GTCACTAATCCTCTGTCTCATTACGCTCGTCTCCTTCCCAATGACCGCAA
GCACCTCGCTGTTCATCCCCACTACTGTAAGCGCCATGGTTTTGCTGCAG
CGGCCTTTCTCCCTCCAAAGTATGTGTCTCGCACGAAAACTGTCTCTGTC
ACCCACTCCTTTTTCAAACACCATGCTTTTCAATCGTTGTGGCGGCGGCA
TCAGTAGCAGCAGCCCCAATCTGGCGGCGTCTTCTCGCTCGTCCAACACC
CGCCTCTACAGCAGTGCCTCAGCCCCCGTACCCCTCTCCTCCCCCCCTCC
TGCTTCCTCTTCAACCTCTACCCCGTCTATCTGCGGGTCTGCCTCTGAAA
TCATTCTCTCAGACGGGCGTGCCCTTACACTTAACTTCCGACCCCGCTCA
TGGTTTAGCCGCTTGTTTGCCTACAGTACAGCTGCGTTGCTCGCGGTGGG
TCGACGGAAGTTTTTGCCGTTCTCCCCTAAATTCAGGTGGCATTTCAAGG
CCTTAGAAAAGGTAGCACATCCTCGTCTTGCCGGAGGGTTGTTCATGGTG
CTATTCGTATTGATGGAAGCGTATGTGTACATGATTCCATTGAGACAAGT
GCAGTTACAGAGCTTCTTTCTACCCGAGGTGGTGCCGGCGGAGAAGTTGG
GACTACCCGCATCACGCTTTATGCCGGTTTTGAGGAGGGAAAAGAGGAAC
AGTAGCGTTGGACGTCTTACACCTGCTGCTGCTTCTGATGCTGCCGCTTC
CTCCACCTCCGCATTTGCCTCTCCTTTCGCCCAATCTACTGCTCCTGCTT
CGAAACCCAGCCAAACAAGCCACCTCAAACTCCACGCCCTCGTCCATCGT
CATCGGCCCTCCCTCCCCCCATCTTCCTCTCCAACCAATATTTTTTTTGT
CCATTGCAACCATGGTTTTGGCGCCAATTCTCTCTCATACGAGCCTGTCC
TCGAGTCCCTCTCTTCTACTCTCGGTCAACAATTTCCTACTCTTGCTGCT
GCCCACGACGCGCCTGGTTTCGGTCTTAGTGAGTCACCAGCGGAGATGGA
GGACGGGGGAGGACAAGAGGAAGAAGGGTTATATTCATTCGAAAACAATG
CGAGGTTAGGAGGGAGGTTGATGGCGGCGTTGGGGGAGGAGGGAGGGAGG
GAGGAAAGGGGGGAGGAGCAGCATGTCTACATAGGGCATTCAATGGGTAG
TCTAACTTCCGCACACATGGCCTTGAACAAACTCGAGAGCCAAGACGAAG
AGGCCAGAGGGAGGGAGGAATCATTGGAAAAAGGGCGAGGTACTCCTTCT
CCCCCTCCTCCACCAGTAATCCTCATCTTGGTGGCCCCGGCCATCATGCC
AATGCGTCGTTCTCCCTCCCGTCTTCCCCCCACCGGGCAGACCTTCCTCC
CTCGGCTCTTCCCTGCGCGTCTCCTCCGATTCATCTTCTCCAAAACTGGC
CCTGTGGCCCACTCCCTCCTCCTCGTCCTCACCTCTTTCTTTCTTCGTTC
CCTCTGTTATTCCGAGAAGTTTTGGAGGGATGGGTTAGGAGTGGCGTGGG
GGGTGGGAGGGCCTCCCACCTCCTTGACTCTGGCTCACTATCGACTGCCA
AGCCTGAAGGAGGGGTGGGAGAGGGGATTGAGTCGCTTTCTGCTTGCCCC
GCTATTCGCTGGAAGGAGGAATGGAGGGAGAGAAGGAGGAAAGGAAGGGG
AGGAAAGAGGGTTGGTAAAGGCGCTGGCGGAGAGGGTGAGGGAGGGGAGA
TTAAAGGTTTTGATTATACATGGCACGAAGGACCGAGTGGTTGCCATGGA
GAATAGCAGGAGGCTGGCCATTGCGATGAAGGAGGGAGGGAAGGGAGTGG
TGGAGGTGGTGGAGATCGAGGGGGTGGGGCACGTGCCGCATGAAGAGGTG
CCGGGTCGCTTTGTAGAGACAGTGGTGGAATTTGTGAAGAGGGGGAGGTA
G
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Synonyms
Publications