NO17G02020, NO17G02020 (gene) Nannochloropsis oceanica

Overview
NameNO17G02020
Unique NameNO17G02020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2293
Alignment locationchr17:583313..585605 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:583313..585605 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO17G02020 vs. NCBI_GenBank
Match: EWM24205.1 (hypothetical protein Naga_100217g7 [Nannochloropsis gaditana])

HSP 1 Score: 231.9 bits (590), Expect = 5.600e-57
Identity = 222/578 (38.41%), Postives = 266/578 (46.02%), Query Frame = 0 
Query:    1 MLDTIIPTNISVS-LHARPVIKSSEAFKPRCHAPSTSISTSSLPATDAPS--AIWMIDGPHLQKALDAYFPGLAQNELPVVLQGLKTSLESEIGVIFTKSIIHDCSAHPGQSTSLAKLLTANPIAARVRMHTLKAVAGAAVDPHTWLPVLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETGLDVALSLDLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNVFVVGLEKEVAGTPLAQYTFPGERGEEGGRGQREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGIRGEECPRGAACDFLRGTSAYRRVSCGSSSKTN---------------KQPARMSPT-GAGGGSGQTSPRPFTTHKLDHLTLFHHPCGAGWGCHNGGPYHQATFPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYS-KNPRVDAT-------HPPVDSSSKTIEEPMAGALRLGVQEGGWEDEAGEEEGWLERAVRRDFYGEGEEDGQ 552
            MLDT  PT ++ S  H     K    FKP   A S + S ++ P++   S  A+ ++DGPHL KALDAYFPGL Q+ELPVV+QGL  SLESE  V F+KSI HDCS   GQ T+L +LL A PIAAR+RMH +KAVAGAAVDPHTW PV +                XXXXXXXXXXXXXXXXXXXX          +E+GLDV++SLDLLRH                                                  +VFV+GL+KE+ GTPL+Q+   G                                          XXXXXXXXXX +  R + CP G ACD+LRGT+AY     G +SK N                Q  R SP  G+GGGSGQTSPRPF+  KLDHLT F H CGAG  C NGGPYHQ  FPH                                                          S +  R D T         P  +S+   +   A      + EG  +    E++GWLE AVR+DFYGE  E  Q
Sbjct:    4 MLDT-APTLVATSHSHVAGCSKQISGFKP-VVALSPASSKAAAPSSGGVSRRAVLVMDGPHLHKALDAYFPGLTQDELPVVVQGLMASLESEFRVTFSKSIFHDCSTALGQPTALGRLLAAPPIAARIRMHAVKAVAGAAVDPHTWEPVRQS----------STSSLXXXXXXXXXXXXXXXXXXXXMQGGEKTTLLIESGLDVSMSLDLLRHASGAPAAGPQDSSQPTVLVVLSARPELSETLDVIAGRSG-----------SVFVIGLQKELYGTPLSQFVTGG---------------ITLDGLLVSAAEALLWHRRRCRQHLQQXXXXXXXXXXSLSPRADFCPHGPACDYLRGTAAY---MSGGASKYNPLDGTIRTCAHWKEVNQSHRSSPAGGSGGGSGQTSPRPFSKSKLDHLTAFQHTCGAGRTCRNGGPYHQMAFPHVSSITSSCSSSSCGHSKGMGVNHGNFREACTKRESPAERQASYTSHDECDRRHVCNHSSERGNRGDFTGQVGGGPFRPAMASAAPCDRSAAITSVTELPEGRGKGATREDDGWLEEAVRKDFYGEEGEASQ 540
[Close]
BLAST of NO17G02020 vs. NCBI_GenBank
Match: EWM24206.1 (hypothetical protein Naga_100217g7 [Nannochloropsis gaditana])

HSP 1 Score: 159.8 bits (403), Expect = 2.700e-35
Identity = 172/479 (35.91%), Postives = 203/479 (42.38%), Query Frame = 0 
Query:   97 SIIHDCSAHPGQSTSLAKLLTANPIAARVRMHTLKAVAGAAVDPHTWLPVLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETGLDVALSLDLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNVFVVGLEKEVAGTPLAQYTFPGERGEEGGRGQREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGIRGEECPRGAACDFLRGTSAYRRVSCGSSSKTN---------------KQPARMSPT-GAGGGSGQTSPRPFTTHKLDHLTLFHHPCGAGWGCHNGGPYHQATFPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYS-KNPRVDAT-------HPPVDSSSKTIEEPMAGALRLGVQEGGWEDEAGEEEGWLERAVRRDFYGEGEEDGQ 552
            SI HDCS   GQ T+L +LL A PIAAR+RMH +KAVAGAAVDPHTW PV +                XXXXXXXXXXXXXXXXXXXX          +E+GLDV++SLDLLRH                                                  +VFV+GL+KE+ GTPL+Q+   G                                          XXXXXXXXXX +  R + CP G ACD+LRGT+AY     G +SK N                Q  R SP  G+GGGSGQTSPRPF+  KLDHLT F H CGAG  C NGGPYHQ  FPH                                                          S +  R D T         P  +S+   +   A      + EG  +    E++GWLE AVR+DFYGE  E  Q
Sbjct:   86 SIFHDCSTALGQPTALGRLLAAPPIAARIRMHAVKAVAGAAVDPHTWEPVRQS----------STSSLXXXXXXXXXXXXXXXXXXXXMQGGEKTTLLIESGLDVSMSLDLLRHASGAPAAGPQDSSQPTVLVVLSARPELSETLDVIAGRSG-----------SVFVIGLQKELYGTPLSQFVTGG---------------ITLDGLLVSAAEALLWHRRRCRQHLQQXXXXXXXXXXSLSPRADFCPHGPACDYLRGTAAY---MSGGASKYNPLDGTIRTCAHWKEVNQSHRSSPAGGSGGGSGQTSPRPFSKSKLDHLTAFQHTCGAGRTCRNGGPYHQMAFPHVSSITSSCSSSSCGHSKGMGVNHGNFREACTKRESPAERQASYTSHDECDRRHVCNHSSERGNRGDFTGQVGGGPFRPAMASAAPCDRSAAITSVTELPEGRGKGATREDDGWLEEAVRKDFYGEEGEASQ 525
The following BLAST results are available for this feature:
BLAST of NO17G02020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24205.15.600e-5738.41hypothetical protein Naga_100217g7 [Nannochloropsi... [more]
EWM24206.12.700e-3535.91hypothetical protein Naga_100217g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002983NSK002983Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02020.1NO17G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|166063gene_7685Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100217g7gene6261Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02020.1NO17G02020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02020 ID=NO17G02020|Name=NO17G02020|organism=Nannochloropsis oceanica|type=gene|length=2293bp
ATGCTGGACACCATCATCCCAACTAATATCTCCGTGAGTCTACACGCTCG
ACCAGTCATTAAGAGCTCAGAGGCCTTTAAACCTCGCTGTCATGCACCCT
CCACCTCCATCTCCACCTCGTCCTTGCCTGCAACCGATGCCCCCTCGGCC
ATCTGGATGATCGACGGGCCGCATCTGCAAAAAGCGCTGGACGCCTACTT
CCCTGGTCTGGCCCAGAACGAGCTTCCTGTCGTCTTGCAAGGCTTGAAGA
CCTCCCTGGAGAGCGAGATCGGCGTGATATTCACTAAAAGgtgcgtggca
aggacgggcacgtacgacgaatcaaagcacattcggatctctcacacgtc
cacgtggggagcactatgttctcctttcagagccaccattcccatcagta
atcactacatacacaccaatcacatcactacactcttcatgagtcttcat
ggtgaccttcccttattccacttctctttccccgcctcgtgtcctccacc
cgatcaaaactttcatcttcaagcatcgcctaccacccccttcacgcttc
cacacacaatgcttcccccttttaaagaactacatatatgcaattcgcca
cgaatccaagcagagcaagcccattaaaagcttctcctttgtaacgtagc
ccccctcagcctcctcacccccacccttcgtccctcacagCATCATTCAC
GACTGCAGCGCCCATCCCGGCCAGTCCACCTCCCTCGCCAAGCTGCTAAC
CGCCAATCCTATCGCTGCCCGCGTGCGCATGCATACACTCAAGGCTGTAG
CAGGCGCCGCGGTGGACCCCCACACATGGCTACCTGTCCTGCGACAGCAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCTTGTATAGCTGCAGCAACAGCAG
CAACAGCAGCATTGCGTTGCTGACTGGGAATGGTGGGGAGAATTTCCAAG
GAGGGGGGGATGGAGGGAAGACAACTCTTCTCGTCGAAACGGGGCTCGAC
GTGGCCCTGTCGCTCGACCTCTTGCGACACGCTTCCTCCTCATCCATCCC
TCCGTCTCCTCCTCCCATCCTGGTCGTCCTAAGCGCCCGATCCGAGCTTA
GCGAGACTTTGGAAGTCGTTGCCGCCAAGGGAGAATCGCAAGCACGTAAA
GGAGGTGGGGGAGGGCGGGCAGGAGGGAGGAATGTCTTCGTGGTCGGTCT
CGAGAAGGAAGTCGCTGGCACCCCCCTGGCTCAGTACACTTTTCCTGGGG
AGAGAGGGGAGGAGGGAGGGAGGGGACAACGAGAAAGAACCACCACCCTC
GACAAGCTCCTCATCTCTGCCGCTGAAGCCCTCTTGTGGCACCGTCGTCG
CCTCCGCCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGATAGGAATACGGGGGGAAGAGTGTCCTCGAGGGGCCGCTTGT
GACTTCCTCCGTGGCACTTCTGCCTATAGACGCGTCAGTTGTGGCAGTAG
CAGCAAGACCAACAAGCAACCTGCTCGCATGTCCCCTACCGGCGCCGGAG
GAGGGAGTGGTCAGACGAGCCCTCGTCCTTTTACGACTCACAAATTAGAT
CACTTGACTCTCTTCCATCACCCGTGTGGGGCAGGGTGGGGGTGTCATAA
CGGGGGGCCCTACCACCAAGCCACATTCCCCCACACCACAACCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAACAATAAC
AACAGCCCTGCACAGCGTTTGGCCACGACCACCAGCTCGTACGAGCTTCT
GCACAGCAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCG
ATAGCTATAGCAAGAACCCTCGCGTTGATGCAACCCACCCCCCTGTTGAT
AGCAGCAGCAAGACGATCGAAGAGCCCATGGCCGGGGCATTGAGGTTGGG
CGTGCAGGAGGGAGGGTGGGAGGACGAGGCAGGGGAAGAGGAGGGATGGT
TAGAGCGAGCCGTGCGCAGAGATTTTTATGGAGAGGGAGAAGAGGATGGT
CAGAATGAGGGGGCAGAGTTCGATGCTTCCGTGTGCGTCTCGGAAAAGCA
GCAGCGGGAGGAGCGATTGAGGAAGCCTTTTTGGTGGCAAAAGTTGAGGA
GGAGTCAGGAAGAGGAGGAGGAGGAGGAGGAAGGGAAGTCGGCGGAAGAA
GAGCGGCAGGTGCGGTGGGAGCAGGAGGTGGATAAGGAGGAGGAGGTGCG
CCGCCGTCGGGAGGAAGACACCCTTTTTCCCATGTCTTTGTAA
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protein sequence of NO17G02020.1

>NO17G02020.1-protein ID=NO17G02020.1-protein|Name=NO17G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=631bp
MLDTIIPTNISVSLHARPVIKSSEAFKPRCHAPSTSISTSSLPATDAPSA
IWMIDGPHLQKALDAYFPGLAQNELPVVLQGLKTSLESEIGVIFTKSIIH
DCSAHPGQSTSLAKLLTANPIAARVRMHTLKAVAGAAVDPHTWLPVLRQH
SSSSSSSSSLYSCSNSSNSSIALLTGNGGENFQGGGDGGKTTLLVETGLD
VALSLDLLRHASSSSIPPSPPPILVVLSARSELSETLEVVAAKGESQARK
GGGGGRAGGRNVFVVGLEKEVAGTPLAQYTFPGERGEEGGRGQRERTTTL
DKLLISAAEALLWHRRRLRQQQQQQQQQQQQQQQQQIGIRGEECPRGAAC
DFLRGTSAYRRVSCGSSSKTNKQPARMSPTGAGGGSGQTSPRPFTTHKLD
HLTLFHHPCGAGWGCHNGGPYHQATFPHTTTSSSSSSSSSSSSSSNSNNN
NSPAQRLATTTSSYELLHSSSSSSSSSSSSSSSDSYSKNPRVDATHPPVD
SSSKTIEEPMAGALRLGVQEGGWEDEAGEEEGWLERAVRRDFYGEGEEDG
QNEGAEFDASVCVSEKQQREERLRKPFWWQKLRRSQEEEEEEEEGKSAEE
ERQVRWEQEVDKEEEVRRRREEDTLFPMSL*
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Synonyms
Publications