Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr17 genome chr17:583313..585605 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G02020.1 vs.
Match: EWM24205.1 (hypothetical protein Naga_100217g7 [Nannochloropsis gaditana])
HSP 1 Score: 380.6 bits (976), Expect = 9.700e-102
Identity = 311/684 (45.47%), Postives = 389/684 (56.87%), Query Frame = 0
Query: 1 MLDTIIPTNISVS-LHARPVIKSSEAFKPRCHAPSTSISTSSLPATDAPS--AIWMIDGPHLQKALDAYFPGLAQNELPVVLQGLKTSLESEIGVIFTKSIIHDCSAHPGQSTSLAKLLTANPIAARVRMHTLKAVAGAAVDPHTWLPVLRQHSSSSSSSSSLYSCSNSSNSSIALLTGNGGENFQGGGDGGKTTLLVETGLDVALSLDLLRHASSSSIP----PSPPPILVVLSARSELSETLEVVAAKGESQARKGGGGGRAGGRNVFVVGLEKEVAGTPLAQYTFPGERGEEGGRGQRERTTTLDKLLISAAEALLWHRRRLRQQQQQQQQQQQQQQQQQIGIRGEECPRGAACDFLRGTSAYRRVSCGSSSKTN---------------KQPARMSPT-GAGGGSGQTSPRPFTTHKLDHLTLFHHPCGAGWGCHNGGPYHQATFPHTT--TSSSSSSSSSSSSSSNSNNNN---------SPAQRLATTTSSYEL--LHSSSSSSSSSSSSSSSDSYSKNPRVDATHPPVDSSSKTIEEPMAGALRLGVQEGGWEDEAGEEEGWLERAVRRDFYGE---------GEEDGQNEGAEFDASVCVSEKQQR--------EERLRKPFWWQKLRRSQEEEEEEEEGKSAEEERQVRWEQEVDKEEEVRRRREED-TLFPMSL 631
MLDT PT ++ S H K FKP A S + S ++ P++ S A+ ++DGPHL KALDAYFPGL Q+ELPVV+QGL SLESE V F+KSI HDCS GQ T+L +LL A PIAAR+RMH +KAVAGAAVDPHTW PV + SS+SSLYS ++ S+SSIA L G GGEN QGG KTTLL+E+GLDV++SLDLLRHAS + S P +LVVLSAR ELSETL+V+A GR+G +VFV+GL+KE+ GTPL+Q+ G TLD LL+SAAEALLWHRRR RQ QQ+Q QQQQ++Q + R + CP G ACD+LRGT+AY G +SK N Q R SP G+GGGSGQTSPRPF+ KLDHLT F H CGAG C NGGPYHQ FPH + TSS SSSS S N+ N SPA+R A+ TS E H + SS + + P P +S+ + A + EG + E++GWLE AVR+DFYGE EE+ + A C+ +R + + KP WWQ+LRRS +++EEE+ G+ + E E ++ E D LFPMSL
Sbjct: 4 MLDTA-PTLVATSHSHVAGCSKQISGFKPVV-ALSPASSKAAAPSSGGVSRRAVLVMDGPHLHKALDAYFPGLTQDELPVVVQGLMASLESEFRVTFSKSIFHDCSTALGQPTALGRLLAAPPIAARIRMHAVKAVAGAAVDPHTWEPVRQ------SSTSSLYSSNSGSSSSIASLYG-GGENMQGGE---KTTLLIESGLDVSMSLDLLRHASGAPAAGPQDSSQPTVLVVLSARPELSETLDVIA-------------GRSG--SVFVIGLQKELYGTPLSQFVTGG--------------ITLDGLLVSAAEALLWHRRRCRQHLQQRQLQQQQRRQS-LSPRADFCPHGPACDYLRGTAAYMS---GGASKYNPLDGTIRTCAHWKEVNQSHRSSPAGGSGGGSGQTSPRPFSKSKLDHLTAFQHTCGAGRTCRNGGPYHQMAFPHVSSITSSCSSSSCGHSKGMGVNHGNFREACTKRESPAERQASYTSHDECDRRHVCNHSSERGNRGDFTGQVGGGP-----FRPAMASAAPCDRSAAITSVTELPEGRGKGATREDDGWLEEAVRKDFYGEEGEASQVTADEEEDEETAAVVGLRGCLPSVSKRSSNWGRAKQGEIGKPVWWQRLRRSHKDDEEEDGGEDGGGRLEEMAELEPGRDHRGEGDEERDAVLFPMSL 637
The following BLAST results are available for this feature:
BLAST of NO17G02020.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 Expect = 9.70e-102 / Id = 45.47 Sequence EWM24205.1
Match Name E-value Identity Description
EWM24205.1 9.700e-102 45.47 hypothetical protein Naga_100217g7 [Nannochloropsi... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO17G02020.1 ID=NO17G02020.1|Name=NO17G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1893bp ATGCTGGACACCATCATCCCAACTAATATCTCCGTGAGTCTACACGCTCG ACCAGTCATTAAGAGCTCAGAGGCCTTTAAACCTCGCTGTCATGCACCCT CCACCTCCATCTCCACCTCGTCCTTGCCTGCAACCGATGCCCCCTCGGCC ATCTGGATGATCGACGGGCCGCATCTGCAAAAAGCGCTGGACGCCTACTT CCCTGGTCTGGCCCAGAACGAGCTTCCTGTCGTCTTGCAAGGCTTGAAGA CCTCCCTGGAGAGCGAGATCGGCGTGATATTCACTAAAAGCATCATTCAC GACTGCAGCGCCCATCCCGGCCAGTCCACCTCCCTCGCCAAGCTGCTAAC CGCCAATCCTATCGCTGCCCGCGTGCGCATGCATACACTCAAGGCTGTAG CAGGCGCCGCGGTGGACCCCCACACATGGCTACCTGTCCTGCGACAGCAC AGCAGCAGCAGCAGCAGCAGCAGCAGCTTGTATAGCTGCAGCAACAGCAG CAACAGCAGCATTGCGTTGCTGACTGGGAATGGTGGGGAGAATTTCCAAG GAGGGGGGGATGGAGGGAAGACAACTCTTCTCGTCGAAACGGGGCTCGAC GTGGCCCTGTCGCTCGACCTCTTGCGACACGCTTCCTCCTCATCCATCCC TCCGTCTCCTCCTCCCATCCTGGTCGTCCTAAGCGCCCGATCCGAGCTTA GCGAGACTTTGGAAGTCGTTGCCGCCAAGGGAGAATCGCAAGCACGTAAA GGAGGTGGGGGAGGGCGGGCAGGAGGGAGGAATGTCTTCGTGGTCGGTCT CGAGAAGGAAGTCGCTGGCACCCCCCTGGCTCAGTACACTTTTCCTGGGG AGAGAGGGGAGGAGGGAGGGAGGGGACAACGAGAAAGAACCACCACCCTC GACAAGCTCCTCATCTCTGCCGCTGAAGCCCTCTTGTGGCACCGTCGTCG CCTCCGCCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGATAGGAATACGGGGGGAAGAGTGTCCTCGAGGGGCCGCTTGT GACTTCCTCCGTGGCACTTCTGCCTATAGACGCGTCAGTTGTGGCAGTAG CAGCAAGACCAACAAGCAACCTGCTCGCATGTCCCCTACCGGCGCCGGAG GAGGGAGTGGTCAGACGAGCCCTCGTCCTTTTACGACTCACAAATTAGAT CACTTGACTCTCTTCCATCACCCGTGTGGGGCAGGGTGGGGGTGTCATAA CGGGGGGCCCTACCACCAAGCCACATTCCCCCACACCACAACCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAACAATAAC AACAGCCCTGCACAGCGTTTGGCCACGACCACCAGCTCGTACGAGCTTCT GCACAGCAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCG ATAGCTATAGCAAGAACCCTCGCGTTGATGCAACCCACCCCCCTGTTGAT AGCAGCAGCAAGACGATCGAAGAGCCCATGGCCGGGGCATTGAGGTTGGG CGTGCAGGAGGGAGGGTGGGAGGACGAGGCAGGGGAAGAGGAGGGATGGT TAGAGCGAGCCGTGCGCAGAGATTTTTATGGAGAGGGAGAAGAGGATGGT CAGAATGAGGGGGCAGAGTTCGATGCTTCCGTGTGCGTCTCGGAAAAGCA GCAGCGGGAGGAGCGATTGAGGAAGCCTTTTTGGTGGCAAAAGTTGAGGA GGAGTCAGGAAGAGGAGGAGGAGGAGGAGGAAGGGAAGTCGGCGGAAGAA GAGCGGCAGGTGCGGTGGGAGCAGGAGGTGGATAAGGAGGAGGAGGTGCG CCGCCGTCGGGAGGAAGACACCCTTTTTCCCATGTCTTTGTAA back to top protein sequence of NO17G02020.1
>NO17G02020.1-protein ID=NO17G02020.1-protein|Name=NO17G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=631bp MLDTIIPTNISVSLHARPVIKSSEAFKPRCHAPSTSISTSSLPATDAPSA IWMIDGPHLQKALDAYFPGLAQNELPVVLQGLKTSLESEIGVIFTKSIIH DCSAHPGQSTSLAKLLTANPIAARVRMHTLKAVAGAAVDPHTWLPVLRQH SSSSSSSSSLYSCSNSSNSSIALLTGNGGENFQGGGDGGKTTLLVETGLD VALSLDLLRHASSSSIPPSPPPILVVLSARSELSETLEVVAAKGESQARK GGGGGRAGGRNVFVVGLEKEVAGTPLAQYTFPGERGEEGGRGQRERTTTL DKLLISAAEALLWHRRRLRQQQQQQQQQQQQQQQQQIGIRGEECPRGAAC DFLRGTSAYRRVSCGSSSKTNKQPARMSPTGAGGGSGQTSPRPFTTHKLD HLTLFHHPCGAGWGCHNGGPYHQATFPHTTTSSSSSSSSSSSSSSNSNNN NSPAQRLATTTSSYELLHSSSSSSSSSSSSSSSDSYSKNPRVDATHPPVD SSSKTIEEPMAGALRLGVQEGGWEDEAGEEEGWLERAVRRDFYGEGEEDG QNEGAEFDASVCVSEKQQREERLRKPFWWQKLRRSQEEEEEEEEGKSAEE ERQVRWEQEVDKEEEVRRRREEDTLFPMSL* back to top mRNA from alignment at chr17:583313..585605-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02020.1 ID=NO17G02020.1|Name=NO17G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp|location=Sequence derived from alignment at chr17:583313..585605- (Nannochloropsis oceanica)ATGCTGGACACCATCATCCCAACTAATATCTCCGTGAGTCTACACGCTCG
ACCAGTCATTAAGAGCTCAGAGGCCTTTAAACCTCGCTGTCATGCACCCT
CCACCTCCATCTCCACCTCGTCCTTGCCTGCAACCGATGCCCCCTCGGCC
ATCTGGATGATCGACGGGCCGCATCTGCAAAAAGCGCTGGACGCCTACTT
CCCTGGTCTGGCCCAGAACGAGCTTCCTGTCGTCTTGCAAGGCTTGAAGA
CCTCCCTGGAGAGCGAGATCGGCGTGATATTCACTAAAAG GTGCGTGGCA
AGGACGGGCACGTACGACGAATCAAAGCACATTCGGATCTCTCACACGTC
CACGTGGGGAGCACTATGTTCTCCTTTCAGAGCCACCATTCCCATCAGTA
ATCACTACATACACACCAATCACATCACTACACTCTTCATGAGTCTTCAT
GGTGACCTTCCCTTATTCCACTTCTCTTTCCCCGCCTCGTGTCCTCCACC
CGATCAAAACTTTCATCTTCAAGCATCGCCTACCACCCCCTTCACGCTTC
CACACACAATGCTTCCCCCTTTTAAAGAACTACATATATGCAATTCGCCA
CGAATCCAAGCAGAGCAAGCCCATTAAAAGCTTCTCCTTTGTAACGTAGC
CCCCCTCAGCCTCCTCACCCCCACCCTTCGTCCCTCACAGCATCATTCAC
GACTGCAGCGCCCATCCCGGCCAGTCCACCTCCCTCGCCAAGCTGCTAAC
CGCCAATCCTATCGCTGCCCGCGTGCGCATGCATACACTCAAGGCTGTAG
CAGGCGCCGCGGTGGACCCCCACACATGGCTACCTGTCCTGCGACAGCAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCTTGTATAGCTGCAGCAACAGCAG
CAACAGCAGCATTGCGTTGCTGACTGGGAATGGTGGGGAGAATTTCCAAG
GAGGGGGGGATGGAGGGAAGACAACTCTTCTCGTCGAAACGGGGCTCGAC
GTGGCCCTGTCGCTCGACCTCTTGCGACACGCTTCCTCCTCATCCATCCC
TCCGTCTCCTCCTCCCATCCTGGTCGTCCTAAGCGCCCGATCCGAGCTTA
GCGAGACTTTGGAAGTCGTTGCCGCCAAGGGAGAATCGCAAGCACGTAAA
GGAGGTGGGGGAGGGCGGGCAGGAGGGAGGAATGTCTTCGTGGTCGGTCT
CGAGAAGGAAGTCGCTGGCACCCCCCTGGCTCAGTACACTTTTCCTGGGG
AGAGAGGGGAGGAGGGAGGGAGGGGACAACGAGAAAGAACCACCACCCTC
GACAAGCTCCTCATCTCTGCCGCTGAAGCCCTCTTGTGGCACCGTCGTCG
CCTCCGCCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGATAGGAATACGGGGGGAAGAGTGTCCTCGAGGGGCCGCTTGT
GACTTCCTCCGTGGCACTTCTGCCTATAGACGCGTCAGTTGTGGCAGTAG
CAGCAAGACCAACAAGCAACCTGCTCGCATGTCCCCTACCGGCGCCGGAG
GAGGGAGTGGTCAGACGAGCCCTCGTCCTTTTACGACTCACAAATTAGAT
CACTTGACTCTCTTCCATCACCCGTGTGGGGCAGGGTGGGGGTGTCATAA
CGGGGGGCCCTACCACCAAGCCACATTCCCCCACACCACAACCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAACAATAAC
AACAGCCCTGCACAGCGTTTGGCCACGACCACCAGCTCGTACGAGCTTCT
GCACAGCAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCG
ATAGCTATAGCAAGAACCCTCGCGTTGATGCAACCCACCCCCCTGTTGAT
AGCAGCAGCAAGACGATCGAAGAGCCCATGGCCGGGGCATTGAGGTTGGG
CGTGCAGGAGGGAGGGTGGGAGGACGAGGCAGGGGAAGAGGAGGGATGGT
TAGAGCGAGCCGTGCGCAGAGATTTTTATGGAGAGGGAGAAGAGGATGGT
CAGAATGAGGGGGCAGAGTTCGATGCTTCCGTGTGCGTCTCGGAAAAGCA
GCAGCGGGAGGAGCGATTGAGGAAGCCTTTTTGGTGGCAAAAGTTGAGGA
GGAGTCAGGAAGAGGAGGAGGAGGAGGAGGAAGGGAAGTCGGCGGAAGAA
GAGCGGCAGGTGCGGTGGGAGCAGGAGGTGGATAAGGAGGAGGAGGTGCG
CCGCCGTCGGGAGGAAGACACCCTTTTTCCCATGTCTTTGTAA back to top Coding sequence (CDS) from alignment at chr17:583313..585605-
>NO17G02020.1 ID=NO17G02020.1|Name=NO17G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=1893bp|location=Sequence derived from alignment at chr17:583313..585605- (Nannochloropsis oceanica) ATGCTGGACACCATCATCCCAACTAATATCTCCGTGAGTCTACACGCTCG ACCAGTCATTAAGAGCTCAGAGGCCTTTAAACCTCGCTGTCATGCACCCT CCACCTCCATCTCCACCTCGTCCTTGCCTGCAACCGATGCCCCCTCGGCC ATCTGGATGATCGACGGGCCGCATCTGCAAAAAGCGCTGGACGCCTACTT CCCTGGTCTGGCCCAGAACGAGCTTCCTGTCGTCTTGCAAGGCTTGAAGA CCTCCCTGGAGAGCGAGATCGGCGTGATATTCACTAAAAGCATCATTCAC GACTGCAGCGCCCATCCCGGCCAGTCCACCTCCCTCGCCAAGCTGCTAAC CGCCAATCCTATCGCTGCCCGCGTGCGCATGCATACACTCAAGGCTGTAG CAGGCGCCGCGGTGGACCCCCACACATGGCTACCTGTCCTGCGACAGCAC AGCAGCAGCAGCAGCAGCAGCAGCAGCTTGTATAGCTGCAGCAACAGCAG CAACAGCAGCATTGCGTTGCTGACTGGGAATGGTGGGGAGAATTTCCAAG GAGGGGGGGATGGAGGGAAGACAACTCTTCTCGTCGAAACGGGGCTCGAC GTGGCCCTGTCGCTCGACCTCTTGCGACACGCTTCCTCCTCATCCATCCC TCCGTCTCCTCCTCCCATCCTGGTCGTCCTAAGCGCCCGATCCGAGCTTA GCGAGACTTTGGAAGTCGTTGCCGCCAAGGGAGAATCGCAAGCACGTAAA GGAGGTGGGGGAGGGCGGGCAGGAGGGAGGAATGTCTTCGTGGTCGGTCT CGAGAAGGAAGTCGCTGGCACCCCCCTGGCTCAGTACACTTTTCCTGGGG AGAGAGGGGAGGAGGGAGGGAGGGGACAACGAGAAAGAACCACCACCCTC GACAAGCTCCTCATCTCTGCCGCTGAAGCCCTCTTGTGGCACCGTCGTCG CCTCCGCCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGATAGGAATACGGGGGGAAGAGTGTCCTCGAGGGGCCGCTTGT GACTTCCTCCGTGGCACTTCTGCCTATAGACGCGTCAGTTGTGGCAGTAG CAGCAAGACCAACAAGCAACCTGCTCGCATGTCCCCTACCGGCGCCGGAG GAGGGAGTGGTCAGACGAGCCCTCGTCCTTTTACGACTCACAAATTAGAT CACTTGACTCTCTTCCATCACCCGTGTGGGGCAGGGTGGGGGTGTCATAA CGGGGGGCCCTACCACCAAGCCACATTCCCCCACACCACAACCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAACAATAAC AACAGCCCTGCACAGCGTTTGGCCACGACCACCAGCTCGTACGAGCTTCT GCACAGCAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCG ATAGCTATAGCAAGAACCCTCGCGTTGATGCAACCCACCCCCCTGTTGAT AGCAGCAGCAAGACGATCGAAGAGCCCATGGCCGGGGCATTGAGGTTGGG CGTGCAGGAGGGAGGGTGGGAGGACGAGGCAGGGGAAGAGGAGGGATGGT TAGAGCGAGCCGTGCGCAGAGATTTTTATGGAGAGGGAGAAGAGGATGGT CAGAATGAGGGGGCAGAGTTCGATGCTTCCGTGTGCGTCTCGGAAAAGCA GCAGCGGGAGGAGCGATTGAGGAAGCCTTTTTGGTGGCAAAAGTTGAGGA GGAGTCAGGAAGAGGAGGAGGAGGAGGAGGAAGGGAAGTCGGCGGAAGAA GAGCGGCAGGTGCGGTGGGAGCAGGAGGTGGATAAGGAGGAGGAGGTGCG CCGCCGTCGGGAGGAAGACACCCTTTTTCCCATGTCTTTGTAA back to top