NO17G02020.1, NO17G02020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02020.1
Unique NameNO17G02020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1893
Alignment locationchr17:583313..585605 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:583313..585605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO17G02020.1 vs.
Match: EWM24205.1 (hypothetical protein Naga_100217g7 [Nannochloropsis gaditana])

HSP 1 Score: 380.6 bits (976), Expect = 9.700e-102
Identity = 311/684 (45.47%), Postives = 389/684 (56.87%), Query Frame = 0 
Query:    1 MLDTIIPTNISVS-LHARPVIKSSEAFKPRCHAPSTSISTSSLPATDAPS--AIWMIDGPHLQKALDAYFPGLAQNELPVVLQGLKTSLESEIGVIFTKSIIHDCSAHPGQSTSLAKLLTANPIAARVRMHTLKAVAGAAVDPHTWLPVLRQHSSSSSSSSSLYSCSNSSNSSIALLTGNGGENFQGGGDGGKTTLLVETGLDVALSLDLLRHASSSSIP----PSPPPILVVLSARSELSETLEVVAAKGESQARKGGGGGRAGGRNVFVVGLEKEVAGTPLAQYTFPGERGEEGGRGQRERTTTLDKLLISAAEALLWHRRRLRQQQQQQQQQQQQQQQQQIGIRGEECPRGAACDFLRGTSAYRRVSCGSSSKTN---------------KQPARMSPT-GAGGGSGQTSPRPFTTHKLDHLTLFHHPCGAGWGCHNGGPYHQATFPHTT--TSSSSSSSSSSSSSSNSNNNN---------SPAQRLATTTSSYEL--LHSSSSSSSSSSSSSSSDSYSKNPRVDATHPPVDSSSKTIEEPMAGALRLGVQEGGWEDEAGEEEGWLERAVRRDFYGE---------GEEDGQNEGAEFDASVCVSEKQQR--------EERLRKPFWWQKLRRSQEEEEEEEEGKSAEEERQVRWEQEVDKEEEVRRRREED-TLFPMSL 631
            MLDT  PT ++ S  H     K    FKP   A S + S ++ P++   S  A+ ++DGPHL KALDAYFPGL Q+ELPVV+QGL  SLESE  V F+KSI HDCS   GQ T+L +LL A PIAAR+RMH +KAVAGAAVDPHTW PV +      SS+SSLYS ++ S+SSIA L G GGEN QGG    KTTLL+E+GLDV++SLDLLRHAS +        S P +LVVLSAR ELSETL+V+A             GR+G  +VFV+GL+KE+ GTPL+Q+   G               TLD LL+SAAEALLWHRRR RQ  QQ+Q QQQQ++Q  +  R + CP G ACD+LRGT+AY     G +SK N                Q  R SP  G+GGGSGQTSPRPF+  KLDHLT F H CGAG  C NGGPYHQ  FPH +  TSS SSSS   S     N+ N         SPA+R A+ TS  E    H  + SS   +    +      P       P  +S+   +   A      + EG  +    E++GWLE AVR+DFYGE          EE+ +   A      C+    +R        +  + KP WWQ+LRRS +++EEE+ G+      +   E E  ++       E D  LFPMSL
Sbjct:    4 MLDTA-PTLVATSHSHVAGCSKQISGFKPVV-ALSPASSKAAAPSSGGVSRRAVLVMDGPHLHKALDAYFPGLTQDELPVVVQGLMASLESEFRVTFSKSIFHDCSTALGQPTALGRLLAAPPIAARIRMHAVKAVAGAAVDPHTWEPVRQ------SSTSSLYSSNSGSSSSIASLYG-GGENMQGGE---KTTLLIESGLDVSMSLDLLRHASGAPAAGPQDSSQPTVLVVLSARPELSETLDVIA-------------GRSG--SVFVIGLQKELYGTPLSQFVTGG--------------ITLDGLLVSAAEALLWHRRRCRQHLQQRQLQQQQRRQS-LSPRADFCPHGPACDYLRGTAAYMS---GGASKYNPLDGTIRTCAHWKEVNQSHRSSPAGGSGGGSGQTSPRPFSKSKLDHLTAFQHTCGAGRTCRNGGPYHQMAFPHVSSITSSCSSSSCGHSKGMGVNHGNFREACTKRESPAERQASYTSHDECDRRHVCNHSSERGNRGDFTGQVGGGP-----FRPAMASAAPCDRSAAITSVTELPEGRGKGATREDDGWLEEAVRKDFYGEEGEASQVTADEEEDEETAAVVGLRGCLPSVSKRSSNWGRAKQGEIGKPVWWQRLRRSHKDDEEEDGGEDGGGRLEEMAELEPGRDHRGEGDEERDAVLFPMSL 637
The following BLAST results are available for this feature:
BLAST of NO17G02020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24205.19.700e-10245.47hypothetical protein Naga_100217g7 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02020NO17G02020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02020.1NO17G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02020.1.cds1NO17G02020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02020.1.cds2NO17G02020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02020.1 ID=NO17G02020.1|Name=NO17G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1893bp
ATGCTGGACACCATCATCCCAACTAATATCTCCGTGAGTCTACACGCTCG
ACCAGTCATTAAGAGCTCAGAGGCCTTTAAACCTCGCTGTCATGCACCCT
CCACCTCCATCTCCACCTCGTCCTTGCCTGCAACCGATGCCCCCTCGGCC
ATCTGGATGATCGACGGGCCGCATCTGCAAAAAGCGCTGGACGCCTACTT
CCCTGGTCTGGCCCAGAACGAGCTTCCTGTCGTCTTGCAAGGCTTGAAGA
CCTCCCTGGAGAGCGAGATCGGCGTGATATTCACTAAAAGCATCATTCAC
GACTGCAGCGCCCATCCCGGCCAGTCCACCTCCCTCGCCAAGCTGCTAAC
CGCCAATCCTATCGCTGCCCGCGTGCGCATGCATACACTCAAGGCTGTAG
CAGGCGCCGCGGTGGACCCCCACACATGGCTACCTGTCCTGCGACAGCAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCTTGTATAGCTGCAGCAACAGCAG
CAACAGCAGCATTGCGTTGCTGACTGGGAATGGTGGGGAGAATTTCCAAG
GAGGGGGGGATGGAGGGAAGACAACTCTTCTCGTCGAAACGGGGCTCGAC
GTGGCCCTGTCGCTCGACCTCTTGCGACACGCTTCCTCCTCATCCATCCC
TCCGTCTCCTCCTCCCATCCTGGTCGTCCTAAGCGCCCGATCCGAGCTTA
GCGAGACTTTGGAAGTCGTTGCCGCCAAGGGAGAATCGCAAGCACGTAAA
GGAGGTGGGGGAGGGCGGGCAGGAGGGAGGAATGTCTTCGTGGTCGGTCT
CGAGAAGGAAGTCGCTGGCACCCCCCTGGCTCAGTACACTTTTCCTGGGG
AGAGAGGGGAGGAGGGAGGGAGGGGACAACGAGAAAGAACCACCACCCTC
GACAAGCTCCTCATCTCTGCCGCTGAAGCCCTCTTGTGGCACCGTCGTCG
CCTCCGCCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGATAGGAATACGGGGGGAAGAGTGTCCTCGAGGGGCCGCTTGT
GACTTCCTCCGTGGCACTTCTGCCTATAGACGCGTCAGTTGTGGCAGTAG
CAGCAAGACCAACAAGCAACCTGCTCGCATGTCCCCTACCGGCGCCGGAG
GAGGGAGTGGTCAGACGAGCCCTCGTCCTTTTACGACTCACAAATTAGAT
CACTTGACTCTCTTCCATCACCCGTGTGGGGCAGGGTGGGGGTGTCATAA
CGGGGGGCCCTACCACCAAGCCACATTCCCCCACACCACAACCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAACAATAAC
AACAGCCCTGCACAGCGTTTGGCCACGACCACCAGCTCGTACGAGCTTCT
GCACAGCAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCG
ATAGCTATAGCAAGAACCCTCGCGTTGATGCAACCCACCCCCCTGTTGAT
AGCAGCAGCAAGACGATCGAAGAGCCCATGGCCGGGGCATTGAGGTTGGG
CGTGCAGGAGGGAGGGTGGGAGGACGAGGCAGGGGAAGAGGAGGGATGGT
TAGAGCGAGCCGTGCGCAGAGATTTTTATGGAGAGGGAGAAGAGGATGGT
CAGAATGAGGGGGCAGAGTTCGATGCTTCCGTGTGCGTCTCGGAAAAGCA
GCAGCGGGAGGAGCGATTGAGGAAGCCTTTTTGGTGGCAAAAGTTGAGGA
GGAGTCAGGAAGAGGAGGAGGAGGAGGAGGAAGGGAAGTCGGCGGAAGAA
GAGCGGCAGGTGCGGTGGGAGCAGGAGGTGGATAAGGAGGAGGAGGTGCG
CCGCCGTCGGGAGGAAGACACCCTTTTTCCCATGTCTTTGTAA
back to top

protein sequence of NO17G02020.1

>NO17G02020.1-protein ID=NO17G02020.1-protein|Name=NO17G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=631bp
MLDTIIPTNISVSLHARPVIKSSEAFKPRCHAPSTSISTSSLPATDAPSA
IWMIDGPHLQKALDAYFPGLAQNELPVVLQGLKTSLESEIGVIFTKSIIH
DCSAHPGQSTSLAKLLTANPIAARVRMHTLKAVAGAAVDPHTWLPVLRQH
SSSSSSSSSLYSCSNSSNSSIALLTGNGGENFQGGGDGGKTTLLVETGLD
VALSLDLLRHASSSSIPPSPPPILVVLSARSELSETLEVVAAKGESQARK
GGGGGRAGGRNVFVVGLEKEVAGTPLAQYTFPGERGEEGGRGQRERTTTL
DKLLISAAEALLWHRRRLRQQQQQQQQQQQQQQQQQIGIRGEECPRGAAC
DFLRGTSAYRRVSCGSSSKTNKQPARMSPTGAGGGSGQTSPRPFTTHKLD
HLTLFHHPCGAGWGCHNGGPYHQATFPHTTTSSSSSSSSSSSSSSNSNNN
NSPAQRLATTTSSYELLHSSSSSSSSSSSSSSSDSYSKNPRVDATHPPVD
SSSKTIEEPMAGALRLGVQEGGWEDEAGEEEGWLERAVRRDFYGEGEEDG
QNEGAEFDASVCVSEKQQREERLRKPFWWQKLRRSQEEEEEEEEGKSAEE
ERQVRWEQEVDKEEEVRRRREEDTLFPMSL*
back to top

mRNA from alignment at chr17:583313..585605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02020.1 ID=NO17G02020.1|Name=NO17G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp|location=Sequence derived from alignment at chr17:583313..585605- (Nannochloropsis oceanica)
ATGCTGGACACCATCATCCCAACTAATATCTCCGTGAGTCTACACGCTCG
ACCAGTCATTAAGAGCTCAGAGGCCTTTAAACCTCGCTGTCATGCACCCT
CCACCTCCATCTCCACCTCGTCCTTGCCTGCAACCGATGCCCCCTCGGCC
ATCTGGATGATCGACGGGCCGCATCTGCAAAAAGCGCTGGACGCCTACTT
CCCTGGTCTGGCCCAGAACGAGCTTCCTGTCGTCTTGCAAGGCTTGAAGA
CCTCCCTGGAGAGCGAGATCGGCGTGATATTCACTAAAAGGTGCGTGGCA
AGGACGGGCACGTACGACGAATCAAAGCACATTCGGATCTCTCACACGTC
CACGTGGGGAGCACTATGTTCTCCTTTCAGAGCCACCATTCCCATCAGTA
ATCACTACATACACACCAATCACATCACTACACTCTTCATGAGTCTTCAT
GGTGACCTTCCCTTATTCCACTTCTCTTTCCCCGCCTCGTGTCCTCCACC
CGATCAAAACTTTCATCTTCAAGCATCGCCTACCACCCCCTTCACGCTTC
CACACACAATGCTTCCCCCTTTTAAAGAACTACATATATGCAATTCGCCA
CGAATCCAAGCAGAGCAAGCCCATTAAAAGCTTCTCCTTTGTAACGTAGC
CCCCCTCAGCCTCCTCACCCCCACCCTTCGTCCCTCACAGCATCATTCAC
GACTGCAGCGCCCATCCCGGCCAGTCCACCTCCCTCGCCAAGCTGCTAAC
CGCCAATCCTATCGCTGCCCGCGTGCGCATGCATACACTCAAGGCTGTAG
CAGGCGCCGCGGTGGACCCCCACACATGGCTACCTGTCCTGCGACAGCAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCTTGTATAGCTGCAGCAACAGCAG
CAACAGCAGCATTGCGTTGCTGACTGGGAATGGTGGGGAGAATTTCCAAG
GAGGGGGGGATGGAGGGAAGACAACTCTTCTCGTCGAAACGGGGCTCGAC
GTGGCCCTGTCGCTCGACCTCTTGCGACACGCTTCCTCCTCATCCATCCC
TCCGTCTCCTCCTCCCATCCTGGTCGTCCTAAGCGCCCGATCCGAGCTTA
GCGAGACTTTGGAAGTCGTTGCCGCCAAGGGAGAATCGCAAGCACGTAAA
GGAGGTGGGGGAGGGCGGGCAGGAGGGAGGAATGTCTTCGTGGTCGGTCT
CGAGAAGGAAGTCGCTGGCACCCCCCTGGCTCAGTACACTTTTCCTGGGG
AGAGAGGGGAGGAGGGAGGGAGGGGACAACGAGAAAGAACCACCACCCTC
GACAAGCTCCTCATCTCTGCCGCTGAAGCCCTCTTGTGGCACCGTCGTCG
CCTCCGCCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGATAGGAATACGGGGGGAAGAGTGTCCTCGAGGGGCCGCTTGT
GACTTCCTCCGTGGCACTTCTGCCTATAGACGCGTCAGTTGTGGCAGTAG
CAGCAAGACCAACAAGCAACCTGCTCGCATGTCCCCTACCGGCGCCGGAG
GAGGGAGTGGTCAGACGAGCCCTCGTCCTTTTACGACTCACAAATTAGAT
CACTTGACTCTCTTCCATCACCCGTGTGGGGCAGGGTGGGGGTGTCATAA
CGGGGGGCCCTACCACCAAGCCACATTCCCCCACACCACAACCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAACAATAAC
AACAGCCCTGCACAGCGTTTGGCCACGACCACCAGCTCGTACGAGCTTCT
GCACAGCAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCG
ATAGCTATAGCAAGAACCCTCGCGTTGATGCAACCCACCCCCCTGTTGAT
AGCAGCAGCAAGACGATCGAAGAGCCCATGGCCGGGGCATTGAGGTTGGG
CGTGCAGGAGGGAGGGTGGGAGGACGAGGCAGGGGAAGAGGAGGGATGGT
TAGAGCGAGCCGTGCGCAGAGATTTTTATGGAGAGGGAGAAGAGGATGGT
CAGAATGAGGGGGCAGAGTTCGATGCTTCCGTGTGCGTCTCGGAAAAGCA
GCAGCGGGAGGAGCGATTGAGGAAGCCTTTTTGGTGGCAAAAGTTGAGGA
GGAGTCAGGAAGAGGAGGAGGAGGAGGAGGAAGGGAAGTCGGCGGAAGAA
GAGCGGCAGGTGCGGTGGGAGCAGGAGGTGGATAAGGAGGAGGAGGTGCG
CCGCCGTCGGGAGGAAGACACCCTTTTTCCCATGTCTTTGTAA
back to top

Coding sequence (CDS) from alignment at chr17:583313..585605-

>NO17G02020.1 ID=NO17G02020.1|Name=NO17G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=1893bp|location=Sequence derived from alignment at chr17:583313..585605- (Nannochloropsis oceanica)
ATGCTGGACACCATCATCCCAACTAATATCTCCGTGAGTCTACACGCTCG
ACCAGTCATTAAGAGCTCAGAGGCCTTTAAACCTCGCTGTCATGCACCCT
CCACCTCCATCTCCACCTCGTCCTTGCCTGCAACCGATGCCCCCTCGGCC
ATCTGGATGATCGACGGGCCGCATCTGCAAAAAGCGCTGGACGCCTACTT
CCCTGGTCTGGCCCAGAACGAGCTTCCTGTCGTCTTGCAAGGCTTGAAGA
CCTCCCTGGAGAGCGAGATCGGCGTGATATTCACTAAAAGCATCATTCAC
GACTGCAGCGCCCATCCCGGCCAGTCCACCTCCCTCGCCAAGCTGCTAAC
CGCCAATCCTATCGCTGCCCGCGTGCGCATGCATACACTCAAGGCTGTAG
CAGGCGCCGCGGTGGACCCCCACACATGGCTACCTGTCCTGCGACAGCAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCTTGTATAGCTGCAGCAACAGCAG
CAACAGCAGCATTGCGTTGCTGACTGGGAATGGTGGGGAGAATTTCCAAG
GAGGGGGGGATGGAGGGAAGACAACTCTTCTCGTCGAAACGGGGCTCGAC
GTGGCCCTGTCGCTCGACCTCTTGCGACACGCTTCCTCCTCATCCATCCC
TCCGTCTCCTCCTCCCATCCTGGTCGTCCTAAGCGCCCGATCCGAGCTTA
GCGAGACTTTGGAAGTCGTTGCCGCCAAGGGAGAATCGCAAGCACGTAAA
GGAGGTGGGGGAGGGCGGGCAGGAGGGAGGAATGTCTTCGTGGTCGGTCT
CGAGAAGGAAGTCGCTGGCACCCCCCTGGCTCAGTACACTTTTCCTGGGG
AGAGAGGGGAGGAGGGAGGGAGGGGACAACGAGAAAGAACCACCACCCTC
GACAAGCTCCTCATCTCTGCCGCTGAAGCCCTCTTGTGGCACCGTCGTCG
CCTCCGCCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGATAGGAATACGGGGGGAAGAGTGTCCTCGAGGGGCCGCTTGT
GACTTCCTCCGTGGCACTTCTGCCTATAGACGCGTCAGTTGTGGCAGTAG
CAGCAAGACCAACAAGCAACCTGCTCGCATGTCCCCTACCGGCGCCGGAG
GAGGGAGTGGTCAGACGAGCCCTCGTCCTTTTACGACTCACAAATTAGAT
CACTTGACTCTCTTCCATCACCCGTGTGGGGCAGGGTGGGGGTGTCATAA
CGGGGGGCCCTACCACCAAGCCACATTCCCCCACACCACAACCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAACAATAAC
AACAGCCCTGCACAGCGTTTGGCCACGACCACCAGCTCGTACGAGCTTCT
GCACAGCAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCG
ATAGCTATAGCAAGAACCCTCGCGTTGATGCAACCCACCCCCCTGTTGAT
AGCAGCAGCAAGACGATCGAAGAGCCCATGGCCGGGGCATTGAGGTTGGG
CGTGCAGGAGGGAGGGTGGGAGGACGAGGCAGGGGAAGAGGAGGGATGGT
TAGAGCGAGCCGTGCGCAGAGATTTTTATGGAGAGGGAGAAGAGGATGGT
CAGAATGAGGGGGCAGAGTTCGATGCTTCCGTGTGCGTCTCGGAAAAGCA
GCAGCGGGAGGAGCGATTGAGGAAGCCTTTTTGGTGGCAAAAGTTGAGGA
GGAGTCAGGAAGAGGAGGAGGAGGAGGAGGAAGGGAAGTCGGCGGAAGAA
GAGCGGCAGGTGCGGTGGGAGCAGGAGGTGGATAAGGAGGAGGAGGTGCG
CCGCCGTCGGGAGGAAGACACCCTTTTTCCCATGTCTTTGTAA
back to top
Synonyms
Publications