NO17G01910, NO17G01910 (gene) Nannochloropsis oceanica

Overview
NameNO17G01910
Unique NameNO17G01910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1416
Alignment locationchr17:549546..550961 -

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:549546..550961 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO17G01910 vs. NCBI_GenBank
Match: EWM24264.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 483.4 bits (1243), Expect = 7.900e-133
Identity = 276/476 (57.98%), Postives = 309/476 (64.92%), Query Frame = 0 
Query:    1 MVDSTTYDILLNGLIQNGRVSTAAVVHEMMRKARHPPTIYTYSSLLRLQKSATDVYRIWDQARKKCPRLSLPFLNLLIYELGQVHNDVAGALAAFRAILRMGRRPNTISFNSLFCALMKDANATLPAADLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDECAYYPTAPALSPETRELLSLLDSFKGRTLLETALAVLRCMYEQ-----EIDNSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTFTILMAGISKAELGAQGTSLCVALYREAETQGVMANGILCHALLRSFGTDAVSALGFFKRELRVLLKMLDQVNPQEEREGDKGEEIEGEHETEEDREIDGVITVGGNLSLAYMALLYICGISGRPDLALQLLYAMQRDGLPSDRQAWEAFEAGKTAPGATITTTTSVGQLLMGPYESLLRTETMGLGWETGVTRVRIKF 472
            +VDSTTYDILLNGL+QNGRVSTA  VH MMRKA+ PPT+YTY++L+RLQKSA DVYR+W QAR   PRLSLPFLNLL+YELGQ HND+ GALAAFRAILRMGR+PNTISFNSLF ALMKDANA LP                                                          DE   YP   ALS E R L+SLL+S + RTLLE +L VLR MY +         +                                   ARTFTILMAGI++A+LG +GT+LC+ALY EA+  GV  NGI+CHALLRSFG DA  ALGFFKRELRV LK LD V+  EE           E ETE+ REIDGV T GGNLSLAYMALLYICG+SGR DLALQLLYAMQRDGLP+D+  WEAFEAGKTAPGA  T T+S+GQL MGPYESLLRTET+GLGWETGV RVRIKF
Sbjct:  106 LVDSTTYDILLNGLVQNGRVSTAGAVHTMMRKAQFPPTMYTYAALIRLQKSALDVYRLWGQARADYPRLSLPFLNLLVYELGQSHNDLPGALAAFRAILRMGRQPNTISFNSLFSALMKDANACLP----------------------------RWTPPLEEGGEEGPDKTGERLSHGQGYLLEDE---YPAVSALSSEGRGLISLLESLQDRTLLEASLVVLRSMYHEGKRPSSSKETREGSETGNENMLQGYELGQGRASSPPSVTASARPNARTFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKGALGFFKRELRVSLKALDAVDRAEEAARGL------EDETEDGREIDGVFTSGGNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKTAPGAAATATSSMGQLWMGPYESLLRTETIGLGWETGVRRVRIKF 544
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BLAST of NO17G01910 vs. NCBI_GenBank
Match: XP_005856314.1 (hypothetical protein NGA_2018400, partial [Nannochloropsis gaditana CCMP526] >EKU20037.1 hypothetical protein NGA_2018400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 308.1 bits (788), Expect = 4.600e-80
Identity = 190/369 (51.49%), Postives = 213/369 (57.72%), Query Frame = 0 
Query:   85 HNDVAGALAAFRAILRMGRRPNTISFNSLFCALMKDANATLPAADLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDECAYYPTAPALSPETRELLSLLDSFKGRTLLETALAVLRCMYEQ-----EIDNSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTFTILMAGISKAELGAQGTSLCVALYREAETQGVMANGILCHALLRSFGTDAVSALGFFKRELRVLLKMLDQVNPQEEREGDKGEEIEGEHETEEDREIDGVITVGGNLSLAYMALLYICGISGRPDLALQLLYAMQRDGLPSDRQAWEAFEAGKTAPGATITTTTSVGQLLMGPYE 449
            HND+ GALAAFRAILRMGR+PNTISFNSLF ALMKDANA LP                                                          DE   YP   ALS E R L+SLL+S + RTLLE +L VLR MY +         +                                   ARTFTILMAGI++A+LG +GT+LC+ALY EA+  GV  NGI+CHALLRSFG DA  ALGFFKRELRV LK LD V+  EE           E ETE+ REIDGV T GGNLSLAYMALLYICG+SGR DLALQLLYAMQRDGLP+D+  WEAFEAGKTAPGA  T T+S+GQL MGPYE
Sbjct:    2 HNDLPGALAAFRAILRMGRQPNTISFNSLFSALMKDANACLP----------------------------RWTPPLEEGGEEGPDKTGERLSHGQGYLLEDE---YPAVSALSSEGRGLISLLESLQDRTLLEASLVVLRSMYHEGKRPSSSKETREGSETGNENMLQGYELGQGRASSPPSVTASARPNARTFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKGALGFFKRELRVSLKALDAVDRVEEAARGL------EDETEDGREIDGVFTSGGNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKTAPGAAATATSSMGQLWMGPYE 333
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BLAST of NO17G01910 vs. NCBI_GenBank
Match: CBJ32994.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.2 bits (204), Expect = 2.400e-12
Identity = 104/405 (25.68%), Postives = 154/405 (38.02%), Query Frame = 0 
Query:   30 MRKARHPPTIYTYSSLLRLQKSATDVYRIWDQARKKCPRLSLPFLNLLIYELGQVHNDVAGALAAFRAILRM-GRRPNTISFNSLFCALMKDANATLPAADL--LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDECAYYPTAPALSPETRELLSLLDSFKGRTLLETALAVLRCMYE-QEIDNSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTFTILMAGISKAELGAQ---GTSLCVALYREAETQGVMANGILCHALLRSFGTDAVSALGFFKRELRVLLKMLDQVNPQEEREGDKGEEIEGEHETEEDREIDGVITVGGNLSLAYMALLYICGISGRPDLALQLLYAMQRDGL-PSDRQAWEAFEAGK 427
            MR+    P   T ++L+RLQ S  DVY + + ARK     SL FLN  I  LG  H+DV GAL     I  + G  P+  S+NSL  AL++D        D+  +                                                     +E    P A  +SP   ++ +      G T  E A    R + +      SG                                           GI  A+ GA+    T LC  LY EA  + +  NG +C+A+L  FG D   A+ F++R +R  L     V   +ER+   G   +     +E+ + D        L  AY  LLY+CG + RPD AL++++A+++DG+ PS   +   F+A K
Sbjct:    1 MRRRGIKPDNITLAALVRLQFSREDVYNVMETARKLRIDPSLTFLNSCIRALGD-HSDVYGALQVMERIKALEGMEPDVFSYNSLIYALVQDPWVFEEIEDVGSVEDIPEVTAVTTSSRPAGSKQAPFASVVDGPSSHGSSSAGLDRVIGAEAALLLLEEMKTLPDACGVSP---DIFTYTTVISGVTRAEDARRAGRHVKQWWRTPRSGPG---------------------------------------YQGIRAADGGAEQVSSTELCTQLYMEATERDIHLNGKICNAVLVGFGADLTGAISFWRRCVRPAL-----VQDSDERDAVNGISAQQTRRPQENLKKD--------LFSAYCGLLYVCGRAQRPDAALKVVFALKKDGIRPSSALSNTYFKARK 349
The following BLAST results are available for this feature:
BLAST of NO17G01910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM24264.17.900e-13357.98Pentatricopeptide repeat containing protein [Nanno... [more]
XP_005856314.14.600e-8051.49hypothetical protein NGA_2018400, partial [Nannoch... [more]
CBJ32994.12.400e-1225.68conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002974NSK002974Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01910.1NO17G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599709gene_7699Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g9gene6250Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01910.1NO17G01910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01910 ID=NO17G01910|Name=NO17G01910|organism=Nannochloropsis oceanica|type=gene|length=1416bp
ATGGTGGACAGTACAACTTACGACATCCTATTAAATGGGCTTATTCAAAA
TGGCCGCGTCTCCACCGCTGCAGTTGTCCATGAAATGATGCGCAAGGCCC
GCCATCCACCCACCATCTACACCTACTCCTCCCTCCTCCGACTCCAGAAA
AGCGCCACTGACGTCTATCGTATCTGGGATCAAGCCCGCAAGAAGTGCCC
TCGCCTCAGCCTCCCTTTCCTCAATCTTCTCATCTATGAGCTTGGGCAGG
TCCACAACGATGTCGCAGGGGCTCTGGCTGCCTTCCGTGCGATTCTTCGT
ATGGGGAGAAGACCGAACACGATTTCGTTCAATTCCTTGTTTTGCGCATT
GATGAAAGATGCCAATGCCACCCTCCCTGCCGCGGATCTCCTTTTTGAAG
AACAGCAGCCGCTGCAGGATGAGGAGGAGGAGGGGATGGAGGAGGAAGAG
GATGTTGAAGAGACGTCCACGGGGAAATCTGTTGGTGGAGGAAGGCAAGA
TTTGCCGCGGCAGCAGCAGCAGTGGCGGCGGCGGCAGGCGTCTTTAGTAG
TAGACGAGTGTGCTTACTATCCTACCGCGCCGGCTCTCTCTCCAGAAACT
AGGGAGTTGCTCTCTCTACTGGACTCCTTTAAAGGCCGCACCCTGTTGGA
GACAGCCTTGGCGGTGCTTCGATGCATGTACGAGCAGGAGATAGACAACA
GCGGCAACAACATCAAGAACAACCACAAGAACAACAACAAAGGAGGAGGG
AAGAAGGGAGAATCCTCATTCTCGTCTTCGTCCTCTCCCTTCTCTGCGCG
ACCCAATGCCCGGACCTTCACCATCTTAATGGCAGGGATAAGTAAGGCCG
AGCTGGGAGCACAGGGGACTTCATTATGTGTCGCTTTGTATCGGGAGGCG
GAAACCCAGGGGGTGATGGCGAATGGTATTTTGTGCCACGCCTTGCTGAG
ATCTTTCGGGACCGACGCGGTGAGTGCCTTGGGGTTCTTCAAGAGGGAGC
TAAGGGTACTATTGAAGATGCTGGATCAGGTGAATCCCCAGGAGGAGAGG
GAGGGGGACAAGGGCGAGGAGATTGAAGGGGAACATGAGACGGAGGAAGA
TAGGGAGATTGATGGGGTGATTACGGTCGGCGGAAACCTTTCGTTGGCTT
ATATGGCATTGCTTTACATATGTGGCATCTCCGGTCGGCCGGACCTGGCG
CTGCAGCTGCTGTATGCCATGCAAAGGGATGGGTTACCCAGTGACAGACA
GGCCTGGGAGGCTTTCGAAGCGGGTAAGACGGCACCGGGCGCCACGATCA
CCACCACCACCTCTGTGGGTCAGCTTTTGATGGGGCCGTATGAATCTCTG
TTGCGGACGGAGACAATGGGCTTGGGATGGGAGACGGGCGTGACGCGGGT
GCGCATCAAGTTCTGA
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protein sequence of NO17G01910.1

>NO17G01910.1-protein ID=NO17G01910.1-protein|Name=NO17G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MVDSTTYDILLNGLIQNGRVSTAAVVHEMMRKARHPPTIYTYSSLLRLQK
SATDVYRIWDQARKKCPRLSLPFLNLLIYELGQVHNDVAGALAAFRAILR
MGRRPNTISFNSLFCALMKDANATLPAADLLFEEQQPLQDEEEEGMEEEE
DVEETSTGKSVGGGRQDLPRQQQQWRRRQASLVVDECAYYPTAPALSPET
RELLSLLDSFKGRTLLETALAVLRCMYEQEIDNSGNNIKNNHKNNNKGGG
KKGESSFSSSSSPFSARPNARTFTILMAGISKAELGAQGTSLCVALYREA
ETQGVMANGILCHALLRSFGTDAVSALGFFKRELRVLLKMLDQVNPQEER
EGDKGEEIEGEHETEEDREIDGVITVGGNLSLAYMALLYICGISGRPDLA
LQLLYAMQRDGLPSDRQAWEAFEAGKTAPGATITTTTSVGQLLMGPYESL
LRTETMGLGWETGVTRVRIKF*
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Synonyms
Publications