NO17G01910.1, NO17G01910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01910.1
Unique NameNO17G01910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1416
Alignment locationchr17:549546..550961 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:549546..550961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01910.1 vs.
Match: EWM24264.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 513.8 bits (1322), Expect = 5.500e-142
Identity = 299/476 (62.82%), Postives = 344/476 (72.27%), Query Frame = 0 
Query:    1 MVDSTTYDILLNGLIQNGRVSTAAVVHEMMRKARHPPTIYTYSSLLRLQKSATDVYRIWDQARKKCPRLSLPFLNLLIYELGQVHNDVAGALAAFRAILRMGRRPNTISFNSLFCALMKDANATLPAADLLFEEQQPLQDEEEEGMEEEEDVEETSTGKSVGGGRQDLPRQQQQWRRRQASLVVDECAYYPTAPALSPETRELLSLLDSFKGRTLLETALAVLRCMY-EQEIDNSGNNIKNNHKNNNKG---GGKKGESSFSSSSS-PFSARPNARTFTILMAGISKAELGAQGTSLCVALYREAETQGVMANGILCHALLRSFGTDAVSALGFFKRELRVLLKMLDQVNPQEEREGDKGEEIEGEHETEEDREIDGVITVGGNLSLAYMALLYICGISGRPDLALQLLYAMQRDGLPSDRQAWEAFEAGKTAPGATITTTTSVGQLLMGPYESLLRTETMGLGWETGVTRVRIKF 472
            +VDSTTYDILLNGL+QNGRVSTA  VH MMRKA+ PPT+YTY++L+RLQKSA DVYR+W QAR   PRLSLPFLNLL+YELGQ HND+ GALAAFRAILRMGR+PNTISFNSLF ALMKDANA LP          PL++  EEG ++        TG+ +  G              Q  L+ DE   YP   ALS E R L+SLL+S + RTLLE +L VLR MY E +  +S    +   +  N+    G + G+   SS  S   SARPNARTFTILMAGI++A+LG +GT+LC+ALY EA+  GV  NGI+CHALLRSFG DA  ALGFFKRELRV LK LD V+  EE           E ETE+ REIDGV T GGNLSLAYMALLYICG+SGR DLALQLLYAMQRDGLP+D+  WEAFEAGKTAPGA  T T+S+GQL MGPYESLLRTET+GLGWETGV RVRIKF
Sbjct:  106 LVDSTTYDILLNGLVQNGRVSTAGAVHTMMRKAQFPPTMYTYAALIRLQKSALDVYRLWGQARADYPRLSLPFLNLLVYELGQSHNDLPGALAAFRAILRMGRQPNTISFNSLFSALMKDANACLP------RWTPPLEEGGEEGPDK--------TGERLSHG--------------QGYLLEDE---YPAVSALSSEGRGLISLLESLQDRTLLEASLVVLRSMYHEGKRPSSSKETREGSETGNENMLQGYELGQGRASSPPSVTASARPNARTFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKGALGFFKRELRVSLKALDAVDRAEEAARGL------EDETEDGREIDGVFTSGGNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKTAPGAAATATSSMGQLWMGPYESLLRTETIGLGWETGVRRVRIKF 544
The following BLAST results are available for this feature:
BLAST of NO17G01910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24264.15.500e-14262.82Pentatricopeptide repeat containing protein [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01910NO17G01910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01910.1NO17G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01910.1.cds1NO17G01910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01910.1 ID=NO17G01910.1|Name=NO17G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp
ATGGTGGACAGTACAACTTACGACATCCTATTAAATGGGCTTATTCAAAA
TGGCCGCGTCTCCACCGCTGCAGTTGTCCATGAAATGATGCGCAAGGCCC
GCCATCCACCCACCATCTACACCTACTCCTCCCTCCTCCGACTCCAGAAA
AGCGCCACTGACGTCTATCGTATCTGGGATCAAGCCCGCAAGAAGTGCCC
TCGCCTCAGCCTCCCTTTCCTCAATCTTCTCATCTATGAGCTTGGGCAGG
TCCACAACGATGTCGCAGGGGCTCTGGCTGCCTTCCGTGCGATTCTTCGT
ATGGGGAGAAGACCGAACACGATTTCGTTCAATTCCTTGTTTTGCGCATT
GATGAAAGATGCCAATGCCACCCTCCCTGCCGCGGATCTCCTTTTTGAAG
AACAGCAGCCGCTGCAGGATGAGGAGGAGGAGGGGATGGAGGAGGAAGAG
GATGTTGAAGAGACGTCCACGGGGAAATCTGTTGGTGGAGGAAGGCAAGA
TTTGCCGCGGCAGCAGCAGCAGTGGCGGCGGCGGCAGGCGTCTTTAGTAG
TAGACGAGTGTGCTTACTATCCTACCGCGCCGGCTCTCTCTCCAGAAACT
AGGGAGTTGCTCTCTCTACTGGACTCCTTTAAAGGCCGCACCCTGTTGGA
GACAGCCTTGGCGGTGCTTCGATGCATGTACGAGCAGGAGATAGACAACA
GCGGCAACAACATCAAGAACAACCACAAGAACAACAACAAAGGAGGAGGG
AAGAAGGGAGAATCCTCATTCTCGTCTTCGTCCTCTCCCTTCTCTGCGCG
ACCCAATGCCCGGACCTTCACCATCTTAATGGCAGGGATAAGTAAGGCCG
AGCTGGGAGCACAGGGGACTTCATTATGTGTCGCTTTGTATCGGGAGGCG
GAAACCCAGGGGGTGATGGCGAATGGTATTTTGTGCCACGCCTTGCTGAG
ATCTTTCGGGACCGACGCGGTGAGTGCCTTGGGGTTCTTCAAGAGGGAGC
TAAGGGTACTATTGAAGATGCTGGATCAGGTGAATCCCCAGGAGGAGAGG
GAGGGGGACAAGGGCGAGGAGATTGAAGGGGAACATGAGACGGAGGAAGA
TAGGGAGATTGATGGGGTGATTACGGTCGGCGGAAACCTTTCGTTGGCTT
ATATGGCATTGCTTTACATATGTGGCATCTCCGGTCGGCCGGACCTGGCG
CTGCAGCTGCTGTATGCCATGCAAAGGGATGGGTTACCCAGTGACAGACA
GGCCTGGGAGGCTTTCGAAGCGGGTAAGACGGCACCGGGCGCCACGATCA
CCACCACCACCTCTGTGGGTCAGCTTTTGATGGGGCCGTATGAATCTCTG
TTGCGGACGGAGACAATGGGCTTGGGATGGGAGACGGGCGTGACGCGGGT
GCGCATCAAGTTCTGA
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protein sequence of NO17G01910.1

>NO17G01910.1-protein ID=NO17G01910.1-protein|Name=NO17G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MVDSTTYDILLNGLIQNGRVSTAAVVHEMMRKARHPPTIYTYSSLLRLQK
SATDVYRIWDQARKKCPRLSLPFLNLLIYELGQVHNDVAGALAAFRAILR
MGRRPNTISFNSLFCALMKDANATLPAADLLFEEQQPLQDEEEEGMEEEE
DVEETSTGKSVGGGRQDLPRQQQQWRRRQASLVVDECAYYPTAPALSPET
RELLSLLDSFKGRTLLETALAVLRCMYEQEIDNSGNNIKNNHKNNNKGGG
KKGESSFSSSSSPFSARPNARTFTILMAGISKAELGAQGTSLCVALYREA
ETQGVMANGILCHALLRSFGTDAVSALGFFKRELRVLLKMLDQVNPQEER
EGDKGEEIEGEHETEEDREIDGVITVGGNLSLAYMALLYICGISGRPDLA
LQLLYAMQRDGLPSDRQAWEAFEAGKTAPGATITTTTSVGQLLMGPYESL
LRTETMGLGWETGVTRVRIKF*
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mRNA from alignment at chr17:549546..550961-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01910.1 ID=NO17G01910.1|Name=NO17G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp|location=Sequence derived from alignment at chr17:549546..550961- (Nannochloropsis oceanica)
ATGGTGGACAGTACAACTTACGACATCCTATTAAATGGGCTTATTCAAAA
TGGCCGCGTCTCCACCGCTGCAGTTGTCCATGAAATGATGCGCAAGGCCC
GCCATCCACCCACCATCTACACCTACTCCTCCCTCCTCCGACTCCAGAAA
AGCGCCACTGACGTCTATCGTATCTGGGATCAAGCCCGCAAGAAGTGCCC
TCGCCTCAGCCTCCCTTTCCTCAATCTTCTCATCTATGAGCTTGGGCAGG
TCCACAACGATGTCGCAGGGGCTCTGGCTGCCTTCCGTGCGATTCTTCGT
ATGGGGAGAAGACCGAACACGATTTCGTTCAATTCCTTGTTTTGCGCATT
GATGAAAGATGCCAATGCCACCCTCCCTGCCGCGGATCTCCTTTTTGAAG
AACAGCAGCCGCTGCAGGATGAGGAGGAGGAGGGGATGGAGGAGGAAGAG
GATGTTGAAGAGACGTCCACGGGGAAATCTGTTGGTGGAGGAAGGCAAGA
TTTGCCGCGGCAGCAGCAGCAGTGGCGGCGGCGGCAGGCGTCTTTAGTAG
TAGACGAGTGTGCTTACTATCCTACCGCGCCGGCTCTCTCTCCAGAAACT
AGGGAGTTGCTCTCTCTACTGGACTCCTTTAAAGGCCGCACCCTGTTGGA
GACAGCCTTGGCGGTGCTTCGATGCATGTACGAGCAGGAGATAGACAACA
GCGGCAACAACATCAAGAACAACCACAAGAACAACAACAAAGGAGGAGGG
AAGAAGGGAGAATCCTCATTCTCGTCTTCGTCCTCTCCCTTCTCTGCGCG
ACCCAATGCCCGGACCTTCACCATCTTAATGGCAGGGATAAGTAAGGCCG
AGCTGGGAGCACAGGGGACTTCATTATGTGTCGCTTTGTATCGGGAGGCG
GAAACCCAGGGGGTGATGGCGAATGGTATTTTGTGCCACGCCTTGCTGAG
ATCTTTCGGGACCGACGCGGTGAGTGCCTTGGGGTTCTTCAAGAGGGAGC
TAAGGGTACTATTGAAGATGCTGGATCAGGTGAATCCCCAGGAGGAGAGG
GAGGGGGACAAGGGCGAGGAGATTGAAGGGGAACATGAGACGGAGGAAGA
TAGGGAGATTGATGGGGTGATTACGGTCGGCGGAAACCTTTCGTTGGCTT
ATATGGCATTGCTTTACATATGTGGCATCTCCGGTCGGCCGGACCTGGCG
CTGCAGCTGCTGTATGCCATGCAAAGGGATGGGTTACCCAGTGACAGACA
GGCCTGGGAGGCTTTCGAAGCGGGTAAGACGGCACCGGGCGCCACGATCA
CCACCACCACCTCTGTGGGTCAGCTTTTGATGGGGCCGTATGAATCTCTG
TTGCGGACGGAGACAATGGGCTTGGGATGGGAGACGGGCGTGACGCGGGT
GCGCATCAAGTTCTGA
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Coding sequence (CDS) from alignment at chr17:549546..550961-

>NO17G01910.1 ID=NO17G01910.1|Name=NO17G01910.1|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at chr17:549546..550961- (Nannochloropsis oceanica)
ATGGTGGACAGTACAACTTACGACATCCTATTAAATGGGCTTATTCAAAA
TGGCCGCGTCTCCACCGCTGCAGTTGTCCATGAAATGATGCGCAAGGCCC
GCCATCCACCCACCATCTACACCTACTCCTCCCTCCTCCGACTCCAGAAA
AGCGCCACTGACGTCTATCGTATCTGGGATCAAGCCCGCAAGAAGTGCCC
TCGCCTCAGCCTCCCTTTCCTCAATCTTCTCATCTATGAGCTTGGGCAGG
TCCACAACGATGTCGCAGGGGCTCTGGCTGCCTTCCGTGCGATTCTTCGT
ATGGGGAGAAGACCGAACACGATTTCGTTCAATTCCTTGTTTTGCGCATT
GATGAAAGATGCCAATGCCACCCTCCCTGCCGCGGATCTCCTTTTTGAAG
AACAGCAGCCGCTGCAGGATGAGGAGGAGGAGGGGATGGAGGAGGAAGAG
GATGTTGAAGAGACGTCCACGGGGAAATCTGTTGGTGGAGGAAGGCAAGA
TTTGCCGCGGCAGCAGCAGCAGTGGCGGCGGCGGCAGGCGTCTTTAGTAG
TAGACGAGTGTGCTTACTATCCTACCGCGCCGGCTCTCTCTCCAGAAACT
AGGGAGTTGCTCTCTCTACTGGACTCCTTTAAAGGCCGCACCCTGTTGGA
GACAGCCTTGGCGGTGCTTCGATGCATGTACGAGCAGGAGATAGACAACA
GCGGCAACAACATCAAGAACAACCACAAGAACAACAACAAAGGAGGAGGG
AAGAAGGGAGAATCCTCATTCTCGTCTTCGTCCTCTCCCTTCTCTGCGCG
ACCCAATGCCCGGACCTTCACCATCTTAATGGCAGGGATAAGTAAGGCCG
AGCTGGGAGCACAGGGGACTTCATTATGTGTCGCTTTGTATCGGGAGGCG
GAAACCCAGGGGGTGATGGCGAATGGTATTTTGTGCCACGCCTTGCTGAG
ATCTTTCGGGACCGACGCGGTGAGTGCCTTGGGGTTCTTCAAGAGGGAGC
TAAGGGTACTATTGAAGATGCTGGATCAGGTGAATCCCCAGGAGGAGAGG
GAGGGGGACAAGGGCGAGGAGATTGAAGGGGAACATGAGACGGAGGAAGA
TAGGGAGATTGATGGGGTGATTACGGTCGGCGGAAACCTTTCGTTGGCTT
ATATGGCATTGCTTTACATATGTGGCATCTCCGGTCGGCCGGACCTGGCG
CTGCAGCTGCTGTATGCCATGCAAAGGGATGGGTTACCCAGTGACAGACA
GGCCTGGGAGGCTTTCGAAGCGGGTAAGACGGCACCGGGCGCCACGATCA
CCACCACCACCTCTGTGGGTCAGCTTTTGATGGGGCCGTATGAATCTCTG
TTGCGGACGGAGACAATGGGCTTGGGATGGGAGACGGGCGTGACGCGGGT
GCGCATCAAGTTCTGA
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Synonyms
Publications