NO17G01750, NO17G01750 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G01750
Unique Name	NO17G01750
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2310
Alignment location	chr17:507676..509985 +

Link to JBrowse

Properties


Property Name	Value
Description	Ribosomal rna processing protein 1

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:507676..509985 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing
GO:0006364	rRNA processing

Vocabulary: **Cellular Component**
Term	Definition
GO:0030688	preribosome, small subunit precursor
GO:0030688	preribosome, small subunit precursor

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold
IPR010301	Nop52

Homology

[Close]

BLAST of NO17G01750 vs. NCBI_GenBank
Match: EWM24267.1 (ribosomal rna processing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 470.3 bits (1209), Expect = 1.100e-128
Identity = 345/799 (43.18%), Postives = 393/799 (49.19%), Query Frame = 0

Query:    1 MVLMGSGGMSNSGRSSKKSRALLSPQVMKAT--ASSSSVEVVMTPAIVEGSNGKGSNGKVILQEEKEIIAFARRLAANEKRDRDQALKRLEGWMTKHKQLSEKDLLKIWKGLFYCMWMSDKAQVQQELGRAISRLVHCFGQDLARAHLFVATFYRTVRREWTGLDQHRLDKFYSFMRSMLRECLTFAQQHDWSSEALAAVVLPLDAEVLVQPWPNGLRLHMCDLIIPELAKIGGPRLTTPQALAVLQPFLVAMATSADRVVAERARARVLLDLIEAKSKQRVKRGALDEDSEGGDGGSMLNGVDLEALQATVFELAAAPETRERYRAGLYDAHKGLQSLTGKKRASSPKAMIVSLP----------KPSGTPVERNGKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASPTLTPVSSESKPAKGALG-DKAEKKTKLSKKGGKE---DTTILTKKNVILPAIQPSETKSSSGKRNAEKEKALDTMSAAKT-------AGGLQQGIKHKDAVVKVPAE------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPVFIPSKKFAGGKCGYAFKKGQQGVGYYIDSVQRGGAAMPSVGGAGNAGSNKKVRWGKVQVKLFNKHASPADGKGNKTVSFMGGVAAD-RGKGKQSGXXXXXXXXXXXXTQHNNNRRKAVSYF 770
            M LMG GG  +S RS+ K R   S QV KA         E V       G  G  + GK++ +EEKEII FA+RLAANEKR+RDQALKRLE WM KHK LSEKD LKIWKGLFYCMWMSD+A+VQQ+LG AISRLVHCFG+D  RAHLFV  FYRTVRREW GLDQHRLDKFYSFMR MLRECL FAQQ  WS+EAL +VV PL+AEVL QPWPNGLRLH CDLI+PELA++GG  LTT QAL VLQPFLVAMATSADRVVAERARARVLLDL+ +K  + V+ G      E  D  S + GVD+EA+QATVF LA++  TRERYRA LY+AHK  Q LTGKKRA   KA+ VS P           P GT     G  A                                                                                                                           S  L    +E K  KG  G  K     K ++K GK     T    KK  I  + Q S+ +SS+ KRNA++EKA+     AK        A G     K K      P+E                                                               E  FIPSK F GGK GY +KK +QG+GYY+D  QRGG               KKVRWGKVQVKLFNK ASPADGK  KTVSFM   +   RGK + +G                NNRR+AVSYF
Sbjct:    1 MGLMGRGG--SSTRSTGKIRVPASTQVKKANDLCDPPFNEEVTAELASSGLEGSINGGKMLPEEEKEIIGFAKRLAANEKRERDQALKRLEVWMAKHKNLSEKDFLKIWKGLFYCMWMSDRARVQQDLGGAISRLVHCFGRDSGRAHLFVGAFYRTVRREWPGLDQHRLDKFYSFMRRMLRECLRFAQQRAWSAEALVSVVFPLNAEVLQQPWPNGLRLHACDLILPELARVGGGELTTAQALEVLQPFLVAMATSADRVVAERARARVLLDLVASKEAEGVEAGG----KEDVDAVSCMAGVDMEAVQATVFGLASSSATRERYRAALYEAHKAFQKLTGKKRADPAKAIRVSFPVVEAGKGVLMGPQGTERGGGGGEAGDGEEGESCIDSGNGVKKRKAHAVLAEDRMKRERTGTVDSKTLSRGKEAVDLRD---------------------------------------------------------------------SKVLGATVTE-KAVKGKAGVKKMMSMQKPAEKDGKSLEGMTQPTAKKKSIDLSSQKSKGESSASKRNADEEKAIAKSVTAKRLKADILGATGGNANPKRKSEGDDAPSEAARGSIAHKLSARKVEAETNKAEEASHLPAMRHSQAPGKANKKKDATASSTAPSPSNATTGKTEAAFIPSKTFTGGKPGYVYKKDRQGLGYYLDVGQRGG---------------KKVRWGKVQVKLFNKDASPADGK-RKTVSFMRESSGRVRGKTRVAGDKMGRGKGGGGP----NNRRRAVSYF 703

[Close]

BLAST of NO17G01750 vs. NCBI_GenBank
Match: ETM44323.1 (hypothetical protein L914_10428 [Phytophthora parasitica])

HSP 1 Score: 174.1 bits (440), Expect = 1.700e-39
Identity = 103/275 (37.45%), Postives = 153/275 (55.64%), Query Frame = 0

Query:   69 FARRLAANEKRDRDQALKRLEGWMTKHKQLSEKDLLKIWKGLFYCMWMSDKAQVQQELGRAISRLVHCFGQDLARAHLFVATFYRTVRREWTGLDQHRLDKFYSFMRSMLRECLTFAQQHDWSSEALAAVVLPLDAEVLVQPWPNGLRLHMCDLIIPELAKIGGPRLTTPQALAVLQPFLVAMATSADRVVAERARARVLLDLIEAKSK-----QRVKRGALDEDSEGGDGGSMLNGVDLEALQATVFELAAAPETRERYRAGLYDAHKGLQSLT 339
            F + LA  EK+ RD+ALK+L  ++TK K+ +E +  K+WK LFYCMWMSDK  VQ+EL   ++ LVH    +   A  FV +F+RT+ REW GLD  RLDKFYS +R  +RE +   +  DW  + +   V  L  EV+ Q  PNGLR+H+ DL + E+    G  +TT   + +L+PF   +++  D+ V +R R  V  D++ AK K     ++                     VD+  +Q  +F +A+A +T ER RA LY  +K   ++T
Sbjct:   64 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRI-PNAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFIRETVVLLRDQDWEEDLIQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDML-AKYKFGPQSEKEXXXXXXXXXXXXXXXXXFEQVDVAKVQHRIFAIASADDTAERNRAALYTLYKKFFTVT 335

[Close]

BLAST of NO17G01750 vs. NCBI_GenBank
Match: XP_008906792.1 (hypothetical protein PPTG_12501 [Phytophthora parasitica INRA-310] >ETN07988.1 hypothetical protein PPTG_12501 [Phytophthora parasitica INRA-310])

HSP 1 Score: 173.7 bits (439), Expect = 2.200e-39
Identity = 103/275 (37.45%), Postives = 153/275 (55.64%), Query Frame = 0

Query:   69 FARRLAANEKRDRDQALKRLEGWMTKHKQLSEKDLLKIWKGLFYCMWMSDKAQVQQELGRAISRLVHCFGQDLARAHLFVATFYRTVRREWTGLDQHRLDKFYSFMRSMLRECLTFAQQHDWSSEALAAVVLPLDAEVLVQPWPNGLRLHMCDLIIPELAKIGGPRLTTPQALAVLQPFLVAMATSADRVVAERARARVLLDLIEAKSK-----QRVKRGALDEDSEGGDGGSMLNGVDLEALQATVFELAAAPETRERYRAGLYDAHKGLQSLT 339
            F + LA  EK+ RD+ALK+L  ++TK K+ +E +  K+WK LFYCMWMSDK  VQ+EL   ++ LVH    +   A  FV +F+RT+ REW GLD  RLDKFYS +R  +RE +   +  DW  + +   V  L  EV+ Q  PNGLR+H+ DL + E+    G  +TT   + +L+PF   +++  D+ V +R R  V  D++ AK K     ++                     VD+  +Q  +F +A+A +T ER RA LY  +K   ++T
Sbjct:   64 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRI-PNAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFIRETVVLLRDQDWEEDLVQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDML-AKYKFGPQSEKEXXXXXXXXXXXXXXXXXFEQVDVAQVQHRIFAIASADDTAERNRAALYTLYKKFFTVT 335

[Close]

BLAST of NO17G01750 vs. NCBI_GenBank
Match: ETO73128.1 (hypothetical protein F444_10910 [Phytophthora parasitica P1976])

HSP 1 Score: 173.7 bits (439), Expect = 2.200e-39
Identity = 103/275 (37.45%), Postives = 153/275 (55.64%), Query Frame = 0

Query:   69 FARRLAANEKRDRDQALKRLEGWMTKHKQLSEKDLLKIWKGLFYCMWMSDKAQVQQELGRAISRLVHCFGQDLARAHLFVATFYRTVRREWTGLDQHRLDKFYSFMRSMLRECLTFAQQHDWSSEALAAVVLPLDAEVLVQPWPNGLRLHMCDLIIPELAKIGGPRLTTPQALAVLQPFLVAMATSADRVVAERARARVLLDLIEAKSK-----QRVKRGALDEDSEGGDGGSMLNGVDLEALQATVFELAAAPETRERYRAGLYDAHKGLQSLT 339
            F + LA  EK+ RD+ALK+L  ++TK K+ +E +  K+WK LFYCMWMSDK  VQ+EL   ++ LVH    +   A  FV +F+RT+ REW GLD  RLDKFYS +R  +RE +   +  DW  + +   V  L  EV+ Q  PNGLR+H+ DL + E+    G  +TT   + +L+PF   +++  D+ V +R R  V  D++ AK K     ++                     VD+  +Q  +F +A+A +T ER RA LY  +K   ++T
Sbjct:   64 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRI-PNAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFVRETVVLLRDQDWEEDLIQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDML-AKYKFGPQSEKEXXXXXXXXXXXXXXXXXFEQVDVAKVQHRIFAIASADDTAERNRAALYTLYKKFFTVT 335

[Close]

BLAST of NO17G01750 vs. NCBI_GenBank
Match: POM71325.1 (Ribosomal RNA processing protein 1 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 173.7 bits (439), Expect = 2.200e-39
Identity = 102/271 (37.64%), Postives = 153/271 (56.46%), Query Frame = 0

Query:   69 FARRLAANEKRDRDQALKRLEGWMTKHKQLSEKDLLKIWKGLFYCMWMSDKAQVQQELGRAISRLVHCFGQDLARAHLFVATFYRTVRREWTGLDQHRLDKFYSFMRSMLRECLTFAQQHDWSSEALAAVVLPLDAEVLVQPWPNGLRLHMCDLIIPELAKIGGPRLTTPQALAVLQPFLVAMATSADRVVAERARARVLLDLI-EAKSKQRVKRGALDEDSEGGDGGSMLNGVDLEALQATVFELAAAPETRERYRAGLYDAHKGLQSLT 339
            F + LA  EK+ RD+ALK+L  ++TK K+ ++ +  K+WK LFYCMWMSDK  VQ+EL   ++ LVH    D   A  FV +F+RT+ REW GLD  RLDKFYS +R  +RE +   +  DW  E +   V  L AEV+ Q  PNGLR+H+ DL + E+    G  +TT   + +L+PF   +++  D+ V +R R  V  D++ + K   + +                   V++  +Q  +F +A+A +T ER R+ LY  +K   S+T
Sbjct:    8 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTDLEWDKLWKALFYCMWMSDKRPVQEELSSNLAGLVHRI-PDSTLALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFVRETVALLRVQDWDEELVQEFVTILSAEVVSQ-LPNGLRMHLADLYLTEIYNAAGKDVTTEAFITLLEPFFTLLSSEYDKTVFKRVRELVFDDMLTKYKFGSQPEXXXXXXXXXXXXXXXXXEQVEVVQVQHRIFAIASADDTAERNRSALYTLYKKFFSVT 276

[Close]

BLAST of NO17G01750 vs. NCBI_GenBank
Match: ETI44466.1 (hypothetical protein F443_10843 [Phytophthora parasitica P1569])

HSP 1 Score: 172.9 bits (437), Expect = 3.700e-39
Identity = 102/269 (37.92%), Postives = 150/269 (55.76%), Query Frame = 0

Query:   69 FARRLAANEKRDRDQALKRLEGWMTKHKQLSEKDLLKIWKGLFYCMWMSDKAQVQQELGRAISRLVHCFGQDLARAHLFVATFYRTVRREWTGLDQHRLDKFYSFMRSMLRECLTFAQQHDWSSEALAAVVLPLDAEVLVQPWPNGLRLHMCDLIIPELAKIGGPRLTTPQALAVLQPFLVAMATSADRVVAERARARVLLDLIEAKSK-----QRVKRGALDEDSEGGDGGSMLNGVDLEALQATVFELAAAPETRERYRAGLYDAHK 333
            F + LA  EK+ RD+ALK+L  ++TK K+ +E +  K+WK LFYCMWMSDK  VQ+EL   ++ LVH    +   A  FV +F+RT+ REW GLD  RLDKFYS +R  +RE +   +  DW  + +   V  L  EV+ Q  PNGLR+H+ DL + E+    G  +TT   + +L+PF   +++  D+ V +R R  V  D++ AK K     ++                     VD+  +Q  +F +A+A +T ER RA LY  +K
Sbjct:   64 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRI-PNAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFVRETVVLLRDQDWEEDLIQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDML-AKYKFGPQSEKEXXXXXXXXXXXXXXXXXFEQVDVAKVQHRIFAIASADDTAERNRAALYTLYK 329

[Close]

BLAST of NO17G01750 vs. NCBI_GenBank
Match: ETK84456.1 (hypothetical protein L915_10580 [Phytophthora parasitica] >ETL37894.1 hypothetical protein L916_10471 [Phytophthora parasitica] >ETP14277.1 hypothetical protein F441_10769 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 172.9 bits (437), Expect = 3.700e-39
Identity = 102/269 (37.92%), Postives = 150/269 (55.76%), Query Frame = 0

Query:   69 FARRLAANEKRDRDQALKRLEGWMTKHKQLSEKDLLKIWKGLFYCMWMSDKAQVQQELGRAISRLVHCFGQDLARAHLFVATFYRTVRREWTGLDQHRLDKFYSFMRSMLRECLTFAQQHDWSSEALAAVVLPLDAEVLVQPWPNGLRLHMCDLIIPELAKIGGPRLTTPQALAVLQPFLVAMATSADRVVAERARARVLLDLIEAKSK-----QRVKRGALDEDSEGGDGGSMLNGVDLEALQATVFELAAAPETRERYRAGLYDAHK 333
            F + LA  EK+ RD+ALK+L  ++TK K+ +E +  K+WK LFYCMWMSDK  VQ+EL   ++ LVH    +   A  FV +F+RT+ REW GLD  RLDKFYS +R  +RE +   +  DW  + +   V  L  EV+ Q  PNGLR+H+ DL + E+    G  +TT   + +L+PF   +++  D+ V +R R  V  D++ AK K     ++                     VD+  +Q  +F +A+A +T ER RA LY  +K
Sbjct:   64 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRI-PNAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFIRETVVLLRDQDWEEDLVQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDML-AKYKFGPQSEKEXXXXXXXXXXXXXXXXXFEQVDVAKVQHRIFAIASADDTAERNRAALYTLYK 329

[Close]

BLAST of NO17G01750 vs. NCBI_GenBank
Match: ETP42349.1 (hypothetical protein F442_10744 [Phytophthora parasitica P10297])

HSP 1 Score: 172.9 bits (437), Expect = 3.700e-39
Identity = 102/269 (37.92%), Postives = 150/269 (55.76%), Query Frame = 0

Query:   69 FARRLAANEKRDRDQALKRLEGWMTKHKQLSEKDLLKIWKGLFYCMWMSDKAQVQQELGRAISRLVHCFGQDLARAHLFVATFYRTVRREWTGLDQHRLDKFYSFMRSMLRECLTFAQQHDWSSEALAAVVLPLDAEVLVQPWPNGLRLHMCDLIIPELAKIGGPRLTTPQALAVLQPFLVAMATSADRVVAERARARVLLDLIEAKSK-----QRVKRGALDEDSEGGDGGSMLNGVDLEALQATVFELAAAPETRERYRAGLYDAHK 333
            F + LA  EK+ RD+ALK+L  ++TK K+ +E +  K+WK LFYCMWMSDK  VQ+EL   ++ LVH    +   A  FV +F+RT+ REW GLD  RLDKFYS +R  +RE +   +  DW  + +   V  L  EV+ Q  PNGLR+H+ DL + E+    G  +TT   + +L+PF   +++  D+ V +R R  V  D++ AK K     ++                     VD+  +Q  +F +A+A +T ER RA LY  +K
Sbjct:   64 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRI-PNAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFVRETVVLLRDQDWEEDLVQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDML-AKHKFGPQSEKEXXXXXXXXXXXXXXXXXFEQVDVAKVQHRIFAIASADDTAERNRAALYTLYK 329

[Close]

BLAST of NO17G01750 vs. NCBI_GenBank
Match: ETL91023.1 (hypothetical protein L917_10390 [Phytophthora parasitica])

HSP 1 Score: 172.6 bits (436), Expect = 4.900e-39
Identity = 102/269 (37.92%), Postives = 150/269 (55.76%), Query Frame = 0

Query:   69 FARRLAANEKRDRDQALKRLEGWMTKHKQLSEKDLLKIWKGLFYCMWMSDKAQVQQELGRAISRLVHCFGQDLARAHLFVATFYRTVRREWTGLDQHRLDKFYSFMRSMLRECLTFAQQHDWSSEALAAVVLPLDAEVLVQPWPNGLRLHMCDLIIPELAKIGGPRLTTPQALAVLQPFLVAMATSADRVVAERARARVLLDLIEAKSK-----QRVKRGALDEDSEGGDGGSMLNGVDLEALQATVFELAAAPETRERYRAGLYDAHK 333
            F + LA  EK+ RD+ALK+L  ++TK K+ +E +  K+WK LFYCMWMSDK  VQ+EL   ++ LVH    +   A  FV +F+RT+ REW GLD  RLDKFYS +R  +RE +   +  DW  + +   V  L  EV+ Q  PNGLR+H+ DL + E+    G  +TT   + +L+PF   +++  D+ V +R R  V  D++ AK K     ++                     VD+  +Q  +F +A+A +T ER RA LY  +K
Sbjct:   64 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRI-PNAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFVRETVVLLRDQDWEEDLVQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDML-AKYKFGPQSEKEXXXXXXXXXXXXXXXXXFEQVDVAKVQHRIFAIASADDTAERNRAALYTLYK 329

[Close]

BLAST of NO17G01750 vs. NCBI_GenBank
Match: KUF77047.1 (Ribosomal RNA processing protein 1 B [Phytophthora nicotianae] >KUF82826.1 Ribosomal RNA processing protein 1 B [Phytophthora nicotianae])

HSP 1 Score: 172.6 bits (436), Expect = 4.900e-39
Identity = 102/269 (37.92%), Postives = 150/269 (55.76%), Query Frame = 0

Query:   69 FARRLAANEKRDRDQALKRLEGWMTKHKQLSEKDLLKIWKGLFYCMWMSDKAQVQQELGRAISRLVHCFGQDLARAHLFVATFYRTVRREWTGLDQHRLDKFYSFMRSMLRECLTFAQQHDWSSEALAAVVLPLDAEVLVQPWPNGLRLHMCDLIIPELAKIGGPRLTTPQALAVLQPFLVAMATSADRVVAERARARVLLDLIEAKSK-----QRVKRGALDEDSEGGDGGSMLNGVDLEALQATVFELAAAPETRERYRAGLYDAHK 333
            F + LA  EK+ RD+ALK+L  ++TK K+ +E +  K+WK LFYCMWMSDK  VQ+EL   ++ LVH    +   A  FV +F+RT+ REW GLD  RLDKFYS +R  +RE +   +  DW  + +   V  L  EV+ Q  PNGLR+H+ DL + E+    G  +TT   + +L+PF   +++  D+ V +R R  V  D++ AK K     ++                     VD+  +Q  +F +A+A +T ER RA LY  +K
Sbjct:    8 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRI-PNAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFVRETVVLLRDQDWEEDLVQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDML-AKYKFGPQSEKEXXXXXXXXXXXXXXXXXFEQVDVAKVQHRIFAIASADDTAERNRAALYTLYK 273

The following BLAST results are available for this feature:

BLAST of NO17G01750 vs. NCBI_GenBank

BLAST of NO17G01750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM24267.1	1.100e-128	43.18	ribosomal rna processing protein 1 [Nannochloropsi...	[more]
ETM44323.1	1.700e-39	37.45	hypothetical protein L914_10428 [Phytophthora para...	[more]
XP_008906792.1	2.200e-39	37.45	hypothetical protein PPTG_12501 [Phytophthora para...	[more]
ETO73128.1	2.200e-39	37.45	hypothetical protein F444_10910 [Phytophthora para...	[more]
POM71325.1	2.200e-39	37.64	Ribosomal RNA processing protein 1 [Phytophthora p...	[more]
ETI44466.1	3.700e-39	37.92	hypothetical protein F443_10843 [Phytophthora para...	[more]
ETK84456.1	3.700e-39	37.92	hypothetical protein L915_10580 [Phytophthora para...	[more]
ETP42349.1	3.700e-39	37.92	hypothetical protein F442_10744 [Phytophthora para...	[more]
ETL91023.1	4.900e-39	37.92	hypothetical protein L917_10390 [Phytophthora para...	[more]
KUF77047.1	4.900e-39	37.92	Ribosomal RNA processing protein 1 B [Phytophthora...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL156	nonsL156	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR035	ncniR035	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR028	ngnoR028	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK002957	NSK002957	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO17G01750.1	NO17G01750.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|167122	gene_7717	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100020g26	gene6233	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO17G01750.1	NO17G01750.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO17G01750 ID=NO17G01750|Name=NO17G01750|organism=Nannochloropsis oceanica|type=gene|length=2310bp
ATGGTATTGATGGGCAGTGGAGGGATGAGCAACAGCGGCAGGAGCAGCAA
AAAAAGCCGGGCCCTGTTGTCCCCACAGGTCATGAAGGCCACCGCCAGCA
GCAGCAGCGTAGAGGTTGTCATGACCCCCGCCATCGTTGAGGGTAGTAAT
GGTAAGGGTAGTAATGGTAAGGTTATTCTCCAAGAAGAGAAGGAGATCAT
TGCCTTTGCACGACGCCTCGCGGCCAACGAAAAGAGGGACCGGGATCAAG
CCCTGAAGCGCCTCGAGGGCTGGATGACCAAGCACAAGCAGTTGTCGGAA
AAGGACTTGCTGAAGATCTGGAAGGGCCTCTTCTATTGCATGTGGATGTC
TGACAAGGCGCAGGTGCAGCAAGAGTTGGGGCGTGCCATCTCTCGTCTCG
TCCACTGCTTTGGACAGGACCTGGCCCGGGCTCACCTCTTTGTCGCCACC
TTTTACCGCACCGTGCGCCGCGAGTGGACGGGGTTGGACCAGCATCGCCT
GGACAAGTTTTATTCCTTCATGCGCAGTATGCTTAGGGAGTGTTTGACAT
TTGCCCAGCAACACGACTGGTCGTCCGAGGCGCTGGCGGCGGTGGTCTTG
CCCTTGGACGCCGAAGTGCTCGTACAGCCCTGGCCAAATGGATTGCGTCT
GCATATGTGCGACCTGATTATTCCCGAGCTGGCCAAAATAGGAGGGCCGC
GCTTGACCACACCGCAGGCCTTGGCGGTACTGCAACCCTTCTTGGTGGCT
ATGGCGACGTCTGCGGACAGGGTCGTAGCGGAGCGGGCGCGAGCCCGAGT
CTTGCTGGATCTCATTGAAGCCAAGAGTAAACAGAGGGTCAAGAGGGGGG
CCCTTGACGAGGACAGTGAGGGGGGGGACGGGGGGTCGATGTTGAATGGG
GTGGACCTGGAAGCGTTGCAGGCCACTGTGTTTGAGTTGGCCGCTGCACC
TGAGACGCGGGAGAGGTACCGGGCGGGCTTGTACGACGCCCACAAGGGTT
TGCAAAGCCTGACGGGGAAGAAACGAGCTTCTTCACCCAAGGCCATGATT
GTGTCCTTGCCGAAGCCAAGCGGGACGCCCGTGGAAAGGAATGGCAAGAG
GGCGGGGAGGGAGGGAGAGGAGGGAGAGGAGAGGGAGGAGGAGAGGGAGG
AGGAGGAGGAGGAGGAGGAGGATGAGGAGGAGGAGGAGGAGGAGGAGGAG
GACGATTGGATGGATGAAGATGAAGATAAAGATGAGGCTGGAAGTAAGGA
AGAGGAAGGTAAGGCCAAAAATGAGGAGTATAAAGAAAAAGAGGCTGGGG
AGGAGGAAGAGGAGGAGGAGGATTCTCATGCTGCACCCGGAAAGGACAGC
AAGAAGCGCAAGGCCCAGAGAGAGATTGTTCCACTCAAACAGCAGCAGCA
GCGAAAGGGAGGGGAGAAGCTGGCTGTGGTAATCGACGTCAAGAAGGCCA
AGAAGGAAGAAAAACGGATGGCCTCACCCACTCTTACGCCGGTGTCGAGT
GAGTCGAAGCCAGCGAAGGGAGCTCTGGGTGACAAGGCGGAGAAAAAGAC
TAAGCTTTCGAAGAAGGGTGGAAAAGAGGATACGACGATACTGACAAAAA
AAAATGTCATTCTTCCAGCCATTCAGCCGAGCGAGACCAAGAGCAGCAGC
GGCAAGCGCAACGCCGAGAAGGAGAAGGCCTTAGATACGATGAGTGCAGC
CAAAACGGCCGGGGGTCTACAGCAAGGGATAAAGCATAAGGATGCTGTGG
TGAAGGTGCCCGCGGAAAGGAAGGAAAAGACGGCGACCACACGGAAGACT
GCGGCAGCGGCGGCAGCGGCGGCGATCAAGAAGACAAAAGTCATGGTGAA
TGGGGCTGCTACACGGCAAGCAGCACCATCGTCAGAGAATGTGAAAAAGC
AAACCCTTACGGCTGCTGCGTCCTCCACGCCTGCTGCCGAGCCGGTATTC
ATCCCGTCCAAGAAGTTTGCGGGAGGCAAGTGTGGATACGCCTTCAAGAA
GGGGCAACAGGGCGTTGGCTATTACATCGACTCCGTGCAGCGAGGAGGTG
CTGCTATGCCGTCGGTGGGAGGGGCTGGCAATGCCGGTAGCAACAAGAAG
GTGCGGTGGGGCAAGGTCCAAGTCAAACTCTTTAACAAGCACGCTTCCCC
CGCAGACGGCAAGGGTAACAAGACTGTATCTTTTATGGGTGGAGTTGCTG
CTGACAGGGGAAAAGGCAAGCAAAGTGGGCGGGGCGGAAGGGGTGGAGGA
GGTCGAGGCGGCATCACGCAACATAACAATAATCGCCGCAAAGCTGTTTC
TTACTTCTAA

protein sequence of NO17G01750.1

>NO17G01750.1-protein ID=NO17G01750.1-protein|Name=NO17G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=770bp
MVLMGSGGMSNSGRSSKKSRALLSPQVMKATASSSSVEVVMTPAIVEGSN
GKGSNGKVILQEEKEIIAFARRLAANEKRDRDQALKRLEGWMTKHKQLSE
KDLLKIWKGLFYCMWMSDKAQVQQELGRAISRLVHCFGQDLARAHLFVAT
FYRTVRREWTGLDQHRLDKFYSFMRSMLRECLTFAQQHDWSSEALAAVVL
PLDAEVLVQPWPNGLRLHMCDLIIPELAKIGGPRLTTPQALAVLQPFLVA
MATSADRVVAERARARVLLDLIEAKSKQRVKRGALDEDSEGGDGGSMLNG
VDLEALQATVFELAAAPETRERYRAGLYDAHKGLQSLTGKKRASSPKAMI
VSLPKPSGTPVERNGKRAGREGEEGEEREEEREEEEEEEEDEEEEEEEEE
DDWMDEDEDKDEAGSKEEEGKAKNEEYKEKEAGEEEEEEEDSHAAPGKDS
KKRKAQREIVPLKQQQQRKGGEKLAVVIDVKKAKKEEKRMASPTLTPVSS
ESKPAKGALGDKAEKKTKLSKKGGKEDTTILTKKNVILPAIQPSETKSSS
GKRNAEKEKALDTMSAAKTAGGLQQGIKHKDAVVKVPAERKEKTATTRKT
AAAAAAAAIKKTKVMVNGAATRQAAPSSENVKKQTLTAAASSTPAAEPVF
IPSKKFAGGKCGYAFKKGQQGVGYYIDSVQRGGAAMPSVGGAGNAGSNKK
VRWGKVQVKLFNKHASPADGKGNKTVSFMGGVAADRGKGKQSGRGGRGGG
GRGGITQHNNNRRKAVSYF*

Synonyms

Publications