NO17G01740, NO17G01740 (gene) Nannochloropsis oceanica

Overview
NameNO17G01740
Unique NameNO17G01740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1945
Alignment locationchr17:505513..507457 -

Link to JBrowse

Properties
Property NameValue
DescriptionProtein disulfide-isomerase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:505513..507457 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0019725cellular homeostasis
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR013766Thioredoxin_domain
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005623cell
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO17G01740 vs. NCBI_GenBank
Match: EWM24289.1 (protein disulfide-isomerase [Nannochloropsis gaditana])

HSP 1 Score: 312.0 bits (798), Expect = 1.500e-81
Identity = 147/204 (72.06%), Postives = 179/204 (87.75%), Query Frame = 0
Query:    9 SCFVAILSVIFLV-SASEVVELTDANFEHLTQASTGATTGDWFVAFSAPWCGHCKQLVPTWEEIAAELKGEVNIAKVDATVSTNLATRFGIRAFPMLKFFHQGNLYNYRGPRDVEHLMEFALGGYKSTPSVPVPIPPTFVELVKSQIAELKEGVEALFYQIVKEVEAVSKGERPLDAPFIVMMSMVFLFFGVVILTFASLFTGP 212
            S FVA L  +FL+ SA+EVVELTD+NFEHLTQASTGATTGDW VAFSAPWCGHCK LVPTWEE+A ELKGEVN+AKVDA  ++NLA+RF IRAFPMLKFFHQG++Y+YRGPR+ E L+EFA GGYK+ PS PVP+PPTF+  +K Q+ E+ EG++AL YQIV+E +AV KGERP+D PFIVMM+++FLFFGV++L+FA+LFTGP
Sbjct:   12 STFVATLFCVFLIASATEVVELTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDYRGPRNAEQLLEFARGGYKNMPSAPVPVPPTFLAKIKLQLDEVTEGLQALCYQIVREAQAVYKGERPIDTPFIVMMTVIFLFFGVIVLSFAALFTGP 215          
BLAST of NO17G01740 vs. NCBI_GenBank
Match: GAX92759.1 (Hypothetical protein PINS_000683 [Pythium insidiosum])

HSP 1 Score: 169.5 bits (428), Expect = 1.200e-38
Identity = 88/168 (52.38%), Postives = 108/168 (64.29%), Query Frame = 0
Query:    6 HATSCFVAILSVIF---------LVSASEVVELTDANFEHLTQASTGATTGDWFVAFSAPWCGHCKQLVPTWEEIAAELKGEVNIAKVDATVSTNLATRFGIRAFPMLKFFHQGNLYNYRGPRDVEHLMEFALGGYKSTPSVPVPIPPTFVELVKSQIAELKEGVEAL 165
            HAT+  +A+LSV+F           S S V+ LT  NFEHLTQA+TGATTGDW V F APWCGHCK+L PT+E++A ELKG VN+AKVDAT    L  RFGIR +P +  F QG +Y Y GPR  E L  FA  GYK+  S PVP P T +  VK  +  +++   AL
Sbjct:   11 HATA--LALLSVLFAAALCSPAVAASDSNVLVLTTENFEHLTQAATGATTGDWLVEFYAPWCGHCKKLAPTYEQVADELKGVVNVAKVDATEHPELGKRFGIRGYPTILLFRQGKMYKYAGPRTTEELTRFARSGYKTLVSQPVPAPATXLTAVKHHVDLIQKDFVAL 176          
BLAST of NO17G01740 vs. NCBI_GenBank
Match: CBN76521.1 (protein disulfide-isomerase [Ectocarpus siliculosus])

HSP 1 Score: 164.5 bits (415), Expect = 3.900e-37
Identity = 80/170 (47.06%), Postives = 109/170 (64.12%), Query Frame = 0
Query:   21 VSASEVVELTDANFEHLTQASTGATTGDWFVAFSAPWCGHCKQLVPTWEEIAAELKGEVNIAKVDATVSTNLATRFGIRAFPMLKFFHQGNLYNYRGPRDVEHLMEFALGGYKSTPSVPVPIPPTFVELVKSQIAELKEGVEALFYQIVKEVEAVSKGERPLDAPFIVMM 191
            +  + V  LTD +FE +TQASTGATTGDWFV F APWCGHC++L  TW E+A +L GEVN+ KVDAT +  L  RFG++ FP L FF  GNL+ + GPR ++  +EF  GG+K T SVPVP PP+           L  G++ L   ++K++E V  G+ P     +V++
Sbjct:   72 IPGATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEF--GGFKKTDSVPVPGPPS-----------LAGGLKGLLTSVLKDLEGVKDGKMPSQMTIMVLV 228          
BLAST of NO17G01740 vs. NCBI_GenBank
Match: XP_009827775.1 (protein disulfide-isomerase domain [Aphanomyces astaci] >ETV83104.1 protein disulfide-isomerase domain [Aphanomyces astaci])

HSP 1 Score: 164.1 bits (414), Expect = 5.200e-37
Identity = 77/151 (50.99%), Postives = 102/151 (67.55%), Query Frame = 0
Query:   14 ILSVIFLVSASEVVELTDANFEHLTQASTGATTGDWFVAFSAPWCGHCKQLVPTWEEIAAELKGEVNIAKVDATVSTNLATRFGIRAFPMLKFFHQGNLYNYRGPRDVEHLMEFALGGYKSTPSVPVPIPPTFVELVKSQIAELKEGVEAL 165
            +LS+  L +AS VV+LT  +FEHLTQASTGATTGDW V F APWCGHCK L P +E++A ELKG VN+AKVD T +  L  RF I+ FP + FFH+G++Y Y   R  E L+ FA GG+ S  + PVP  P+ V+ +  ++  ++  V  L
Sbjct:   10 VLSMALLCAASNVVDLTSDSFEHLTQASTGATTGDWLVEFYAPWCGHCKSLAPVFEQVADELKGTVNVAKVDVTANAPLGQRFAIKGFPTILFFHEGSMYEYESARTKEALVAFAEGGFASAANTPVPGVPSVVDTITKELDVVRRDVVQL 160          
BLAST of NO17G01740 vs. NCBI_GenBank
Match: XP_008861948.1 (protein disulfide-isomerase domain [Aphanomyces invadans] >ETW10537.1 protein disulfide-isomerase domain [Aphanomyces invadans])

HSP 1 Score: 159.1 bits (401), Expect = 1.700e-35
Identity = 75/149 (50.34%), Postives = 99/149 (66.44%), Query Frame = 0
Query:    6 HATSCFVAILSVIFLVSASEVVELTDANFEHLTQASTGATTGDWFVAFSAPWCGHCKQLVPTWEEIAAELKGEVNIAKVDATVSTNLATRFGIRAFPMLKFFHQGNLYNYRGPRDVEHLMEFALGGYKSTPSVPVPIPPTFVELVKSQI 155
            HA    + +L++    +AS V++LT  +FEHLTQASTGATTGDW V F APWCGHCK L P +E++A EL G VN+AKVD T +  L  RF I+ FP + FFH+G++Y Y   R  E L++FA  GY S   V VP  P+ V+ VK ++
Sbjct:    2 HAVRSLLLVLAIALACAASNVIDLTVDSFEHLTQASTGATTGDWLVEFYAPWCGHCKSLAPVFEQVADELHGSVNVAKVDVTENAALGKRFDIKGFPTILFFHKGSMYAYEAARTKEALVKFAQSGYASIAKVTVPGVPSAVDAVKKEL 150          
BLAST of NO17G01740 vs. NCBI_GenBank
Match: CEM09881.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 158.7 bits (400), Expect = 2.200e-35
Identity = 73/130 (56.15%), Postives = 91/130 (70.00%), Query Frame = 0
Query:   24 SEVVELTDANFEHLTQASTGATTGDWFVAFSAPWCGHCKQLVPTWEEIAAELKGEVNIAKVDATVSTNLATRFGIRAFPMLKFFHQGNLYNYRGPRDVEHLMEFALGGYKSTPSVPVPIPPTFVELVKSQ 154
            S V  LTDANFEH TQAS+GATTGDWF+ F A WCGHC++L PTWEE+AA LKG V +AKVD   +T+  +RF I+ FP L    QG +Y Y+G RD+  L  FA GGYK TP  PVP P + ++ +K +
Sbjct:   28 SAVRVLTDANFEHDTQASSGATTGDWFIEFYANWCGHCQRLQPTWEELAANLKGRVVVAKVDCDANTSTRSRFNIQGFPTLLLLRQGRMYEYKGARDLAALEAFATGGYKKTPGKPVPPPESLLDQLKKE 157          
BLAST of NO17G01740 vs. NCBI_GenBank
Match: XP_004335451.1 (thioredoxin domain containing protein [Acanthamoeba castellanii str. Neff] >ELR13438.1 thioredoxin domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 157.9 bits (398), Expect = 3.700e-35
Identity = 75/143 (52.45%), Postives = 99/143 (69.23%), Query Frame = 0
Query:   22 SASEVVELTDANFEHLTQASTGATTGDWFVAFSAPWCGHCKQLVPTWEEIAAELKGEVNIAKVDATVSTNLATRFGIRAFPMLKFFHQGNLYNYRGPRDVEHLMEFALGGYKSTPSVPVPIPPTFVELVKSQIAELKEGVEAL 165
            ++S+V+EL D NFEHLTQA++G+TTG+W V F APWCGHCK L PTWE +A ELKG V +AKVDAT++  +  RFGI+ FP + FF QG  Y Y G R +E L  FAL G++S  S P+P P + ++ +   I  L E V+ L
Sbjct:   28 ASSDVIELNDDNFEHLTQATSGSTTGNWLVEFYAPWCGHCKSLAPTWEALATELKGTVPVAKVDATLNPLVKKRFGIKGFPTIIFFKQGKQYVYTGGRSLEQLKAFALSGHESVASAPIPAPVSAMDQI---IEMLNEDVQHL 167          
BLAST of NO17G01740 vs. NCBI_GenBank
Match: OWZ00230.1 (Protein disulfide-isomerase domain [Phytophthora megakarya])

HSP 1 Score: 157.5 bits (397), Expect = 4.800e-35
Identity = 75/147 (51.02%), Postives = 99/147 (67.35%), Query Frame = 0
Query:   12 VAILSVIFLVSASEVVELTDANFEHLTQASTGATTGDWFVAFSAPWCGHCKQLVPTWEEIAAELKGEVNIAKVDATVSTNLATRFGIRAFPMLKFFHQGNLYNYRGPRDVEHLMEFALGGYKSTPSVPVPIPPTFVELVKSQIAELK 159
            VA+L++  + + S V+ LT+A+FEH TQA +GATTGDW V F APWCGHCK+L P +E++A +LKG+VN+AKVD T +  L  RFGIR FP L  F  G  Y Y G R +E L  FA GG+KS     V   PTF++ V+ Q  ++K
Sbjct:    9 VALLALQLVAADSNVIVLTNADFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLAPIYEQVADDLKGQVNVAKVDVTENAELGKRFGIRGFPTLLHFSHGKSYKYAGKRTLEDLTAFARGGFKSVEGEKVSGAPTFLDFVEQQALDVK 155          
BLAST of NO17G01740 vs. NCBI_GenBank
Match: XP_009523742.1 (hypothetical protein PHYSODRAFT_354354 [Phytophthora sojae] >EGZ21025.1 hypothetical protein PHYSODRAFT_354354 [Phytophthora sojae])

HSP 1 Score: 154.5 bits (389), Expect = 4.100e-34
Identity = 76/148 (51.35%), Postives = 99/148 (66.89%), Query Frame = 0
Query:   12 VAILSVIFLVSA-SEVVELTDANFEHLTQASTGATTGDWFVAFSAPWCGHCKQLVPTWEEIAAELKGEVNIAKVDATVSTNLATRFGIRAFPMLKFFHQGNLYNYRGPRDVEHLMEFALGGYKSTPSVPVPIPPTFVELVKSQIAELK 159
            +A+L  + LV+A S V+ LT+A+FEH TQA +GATTGDW V F APWCGHCK+L P +E++A ELKGEVN+AKVD T +  L  RFGIR FP +  F  G  Y + G R +E L  FA GG+KS     V   P+F++  K Q  ++K
Sbjct:   12 LALLGALQLVAADSNVIVLTNADFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLAPIYEKVADELKGEVNVAKVDVTDNAELGKRFGIRGFPTVLHFSHGKSYKFTGKRTLEDLAAFARGGFKSVDGEVVGAAPSFLDFAKQQALDVK 159          
BLAST of NO17G01740 vs. NCBI_GenBank
Match: AAN31493.1 (protein disulfide-isomerase [Phytophthora infestans])

HSP 1 Score: 153.3 bits (386), Expect = 9.100e-34
Identity = 71/137 (51.82%), Postives = 92/137 (67.15%), Query Frame = 0
Query:   22 SASEVVELTDANFEHLTQASTGATTGDWFVAFSAPWCGHCKQLVPTWEEIAAELKGEVNIAKVDATVSTNLATRFGIRAFPMLKFFHQGNLYNYRGPRDVEHLMEFALGGYKSTPSVPVPIPPTFVELVKSQIAELK 159
            +AS V+ L++ +FEH TQA +GATTGDW V F APWCGHCK+LVP +E++A+ELKG+VN+AKVD T +  L  RFGIR FP L  F  G  Y Y G R +E L EFA GG+K      V   P+F++    Q  ++K
Sbjct:   26 AASNVIVLSNDDFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLVPIYEKVASELKGQVNVAKVDVTANAELGKRFGIRGFPTLLHFSHGKSYKYSGKRTLEDLAEFARGGFKKVEGEVVNAAPSFLDFAVQQAEDVK 162          
The following BLAST results are available for this feature:
BLAST of NO17G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24289.11.500e-8172.06protein disulfide-isomerase [Nannochloropsis gadit... [more]
GAX92759.11.200e-3852.38Hypothetical protein PINS_000683 [Pythium insidios... [more]
CBN76521.13.900e-3747.06protein disulfide-isomerase [Ectocarpus siliculosu... [more]
XP_009827775.15.200e-3750.99protein disulfide-isomerase domain [Aphanomyces as... [more]
XP_008861948.11.700e-3550.34protein disulfide-isomerase domain [Aphanomyces in... [more]
CEM09881.12.200e-3556.15unnamed protein product [Vitrella brassicaformis C... [more]
XP_004335451.13.700e-3552.45thioredoxin domain containing protein [Acanthamoeb... [more]
OWZ00230.14.800e-3551.02Protein disulfide-isomerase domain [Phytophthora m... [more]
XP_009523742.14.100e-3451.35hypothetical protein PHYSODRAFT_354354 [Phytophtho... [more]
AAN31493.19.100e-3451.82protein disulfide-isomerase [Phytophthora infestan... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002956NSK002956Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01740.1NO17G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599761gene_7718Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g27gene6232Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01740.1NO17G01740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01740 ID=NO17G01740|Name=NO17G01740|organism=Nannochloropsis oceanica|type=gene|length=1945bp
ATCCACAGACACAAAGGAGAGGAGCTTCTCCCTCTCAAGGGCGCACCGCA
CTCGCCGACCACCATGAAGATGAAAGGCCACGCCACCTCCTGCTTTGTGg
taagtgcctcgacgaacgctattcgtcgcagtatctctctccttgctttg
ctgctcgtatagttgtctccatcactgctgcacaagacgccaggagcatc
ttcccattgctgcagaatgctgcgcccctctttgtcttgattgggaggga
gagtcatttggttcgctaccagagctttccaacgccgtggcctatcgctt
ctgtctgcatcttaaaattcggaaccatatggaagttcattaatgccctc
ccaatttctatcgcagacctcgagacggtgcattgtcttggtgaagtggt
tttcaattttcctccgcacacaaacccacgccgcatcacacccacacact
ctctactcatagGCTATTCTGAGCGTAATTTTCTTGGTCTCGGCATCGGA
GGTCGTCGAGCTCACGGATGCCAATTTTGAGCATCTTACTCAGGCCTCCA
CAGGTGCCACAACTGGCGATTGGTTTGTTGCTTTCTCCGCTCCGTGGTGT
GGACATTGCAAGCAATTGGTCCCTACCTGGGAGGAGATAGCCGCGGAGCT
CAAGgtacgtcaatgtctgattggaacaaaagcgatgggtagtgtttggg
gcttcgaaggggctgaagagctagaagcacattttcgaaattccgctttt
gtggcctcaatatgggcatggtccaacaatttttcgcggcaccgctcaca
cattttgactcgcgcatgcccgattttcaaatcaaatatagGGTGAGGTG
AATATCGCCAAAGTTGATGCCACTGTCAGCACCAATTTGGCTACGCGCTT
CGGCATTCGGgtacgtgtgcacgcgcgcacaagttgtctttttcgaaaat
agatccactctagctagacgttttccccctgtacacataaatatatatat
ttatgtgtgtgtgtgtggtatatttttctcctctggtgccttccactgtc
atttcggccgtcacactcattgttttccgatcgtcatcagtgaagcaatc
tttcttaatcaatccaatactttgcttccattttttgcaactcaatgcag
tttttcatcaacaatttcgcagGCCTTTCCCATGCTGAAGTTTTTTCATC
AAGGCAACCTCTACAACTACCGAGGACCTCGCGACGTAGAGCATCTGATG
GAATTTGCGCTGgtaggtgtcgggttattttcttaatagcattgcttcgc
tttacgcccagtatatttgtccacactctctccttgctcgaccgctgctg
ctaatttatattacgccttttcgatagatatgttcgcctgctcatatgta
ggaccttctactacctcacgtcgtgcttatcaaccttccatgaaacccat
tgtctacaaaacctgatagGGTGGATACAAGAGTACGCCTTCCGTCCCTG
TGCCCATCCCTCCCACGTTCGTGGAACTGGTCAAGTCACAGATAGCTGAA
TTGAAAGAAGGTGTAGAGGCTCTCTTCTATCAAATTGTGAAAGAGGTGGA
GGCGGTGTCGAAGGGAGAAAGGCCTTTGGACGCACCTTTCATCGTCATGA
TGAGCATGGTTTTCTTATTTTTCGGTGTCGTCATCCTGACTTTTGCATCT
CTCTTCACGGGGCCTGCGGCTTCCCTGGAAGACAAGGCGGTGATCGATGC
CAAGAAGAAGAAGTAAGCTCGCCCAACATGAGTACATATGTGGGGGGAAG
GACTTATAGAGAAGAGGAGCGATATGAAGGAAAGAAAGCGAAAAGAGGAC
CGACAGAATAGAAGACAAAATAATTAAAGAAAGGACCTGGGCGTTTGGAA
CTACACAGAAGTGAAATAGAAATCTAACAAAGCGTATGATTAAAC
back to top

protein sequence of NO17G01740.1

>NO17G01740.1-protein ID=NO17G01740.1-protein|Name=NO17G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MKMKGHATSCFVAILSVIFLVSASEVVELTDANFEHLTQASTGATTGDWF
VAFSAPWCGHCKQLVPTWEEIAAELKGEVNIAKVDATVSTNLATRFGIRA
FPMLKFFHQGNLYNYRGPRDVEHLMEFALGGYKSTPSVPVPIPPTFVELV
KSQIAELKEGVEALFYQIVKEVEAVSKGERPLDAPFIVMMSMVFLFFGVV
ILTFASLFTGPAASLEDKAVIDAKKKK*
back to top
Synonyms
Publications