NO17G01740.1, NO17G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01740.1
Unique NameNO17G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length926
Alignment locationchr17:505513..507457 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:505513..507457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01740.1 vs.
Match: EWM24289.1 (protein disulfide-isomerase [Nannochloropsis gaditana])

HSP 1 Score: 312.0 bits (798), Expect = 1.500e-81
Identity = 147/204 (72.06%), Postives = 179/204 (87.75%), Query Frame = 0 
Query:    9 SCFVAILSVIFLV-SASEVVELTDANFEHLTQASTGATTGDWFVAFSAPWCGHCKQLVPTWEEIAAELKGEVNIAKVDATVSTNLATRFGIRAFPMLKFFHQGNLYNYRGPRDVEHLMEFALGGYKSTPSVPVPIPPTFVELVKSQIAELKEGVEALFYQIVKEVEAVSKGERPLDAPFIVMMSMVFLFFGVVILTFASLFTGP 212
            S FVA L  +FL+ SA+EVVELTD+NFEHLTQASTGATTGDW VAFSAPWCGHCK LVPTWEE+A ELKGEVN+AKVDA  ++NLA+RF IRAFPMLKFFHQG++Y+YRGPR+ E L+EFA GGYK+ PS PVP+PPTF+  +K Q+ E+ EG++AL YQIV+E +AV KGERP+D PFIVMM+++FLFFGV++L+FA+LFTGP
Sbjct:   12 STFVATLFCVFLIASATEVVELTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDYRGPRNAEQLLEFARGGYKNMPSAPVPVPPTFLAKIKLQLDEVTEGLQALCYQIVREAQAVYKGERPIDTPFIVMMTVIFLFFGVIVLSFAALFTGP 215
The following BLAST results are available for this feature:
BLAST of NO17G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24289.11.500e-8172.06protein disulfide-isomerase [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01740NO17G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01740.1NO17G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01740.1.cds1NO17G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01740.1.cds2NO17G01740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01740.1.cds3NO17G01740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01740.1.cds4NO17G01740.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01740.1.cds5NO17G01740.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01740.1 ID=NO17G01740.1|Name=NO17G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=926bp
ATCCACAGACACAAAGGAGAGGAGCTTCTCCCTCTCAAGGGCGCACCGCA
CTCGCCGACCACCATGAAGATGAAAGGCCACGCCACCTCCTGCTTTGTGG
CTATTCTGAGCGTAATTTTCTTGGTCTCGGCATCGGAGGTCGTCGAGCTC
ACGGATGCCAATTTTGAGCATCTTACTCAGGCCTCCACAGGTGCCACAAC
TGGCGATTGGTTTGTTGCTTTCTCCGCTCCGTGGTGTGGACATTGCAAGC
AATTGGTCCCTACCTGGGAGGAGATAGCCGCGGAGCTCAAGGGTGAGGTG
AATATCGCCAAAGTTGATGCCACTGTCAGCACCAATTTGGCTACGCGCTT
CGGCATTCGGGCCTTTCCCATGCTGAAGTTTTTTCATCAAGGCAACCTCT
ACAACTACCGAGGACCTCGCGACGTAGAGCATCTGATGGAATTTGCGCTG
GGTGGATACAAGAGTACGCCTTCCGTCCCTGTGCCCATCCCTCCCACGTT
CGTGGAACTGGTCAAGTCACAGATAGCTGAATTGAAAGAAGGTGTAGAGG
CTCTCTTCTATCAAATTGTGAAAGAGGTGGAGGCGGTGTCGAAGGGAGAA
AGGCCTTTGGACGCACCTTTCATCGTCATGATGAGCATGGTTTTCTTATT
TTTCGGTGTCGTCATCCTGACTTTTGCATCTCTCTTCACGGGGCCTGCGG
CTTCCCTGGAAGACAAGGCGGTGATCGATGCCAAGAAGAAGAAGTAAGCT
CGCCCAACATGAGTACATATGTGGGGGGAAGGACTTATAGAGAAGAGGAG
CGATATGAAGGAAAGAAAGCGAAAAGAGGACCGACAGAATAGAAGACAAA
ATAATTAAAGAAAGGACCTGGGCGTTTGGAACTACACAGAAGTGAAATAG
AAATCTAACAAAGCGTATGATTAAAC
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protein sequence of NO17G01740.1

>NO17G01740.1-protein ID=NO17G01740.1-protein|Name=NO17G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MKMKGHATSCFVAILSVIFLVSASEVVELTDANFEHLTQASTGATTGDWF
VAFSAPWCGHCKQLVPTWEEIAAELKGEVNIAKVDATVSTNLATRFGIRA
FPMLKFFHQGNLYNYRGPRDVEHLMEFALGGYKSTPSVPVPIPPTFVELV
KSQIAELKEGVEALFYQIVKEVEAVSKGERPLDAPFIVMMSMVFLFFGVV
ILTFASLFTGPAASLEDKAVIDAKKKK*
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mRNA from alignment at chr17:505513..507457-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01740.1 ID=NO17G01740.1|Name=NO17G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp|location=Sequence derived from alignment at chr17:505513..507457- (Nannochloropsis oceanica)
ATCCACAGACACAAAGGAGAGGAGCTTCTCCCTCTCAAGGGCGCACCGCA
CTCGCCGACCACCATGAAGATGAAAGGCCACGCCACCTCCTGCTTTGTGG
TAAGTGCCTCGACGAACGCTATTCGTCGCAGTATCTCTCTCCTTGCTTTG
CTGCTCGTATAGTTGTCTCCATCACTGCTGCACAAGACGCCAGGAGCATC
TTCCCATTGCTGCAGAATGCTGCGCCCCTCTTTGTCTTGATTGGGAGGGA
GAGTCATTTGGTTCGCTACCAGAGCTTTCCAACGCCGTGGCCTATCGCTT
CTGTCTGCATCTTAAAATTCGGAACCATATGGAAGTTCATTAATGCCCTC
CCAATTTCTATCGCAGACCTCGAGACGGTGCATTGTCTTGGTGAAGTGGT
TTTCAATTTTCCTCCGCACACAAACCCACGCCGCATCACACCCACACACT
CTCTACTCATAGGCTATTCTGAGCGTAATTTTCTTGGTCTCGGCATCGGA
GGTCGTCGAGCTCACGGATGCCAATTTTGAGCATCTTACTCAGGCCTCCA
CAGGTGCCACAACTGGCGATTGGTTTGTTGCTTTCTCCGCTCCGTGGTGT
GGACATTGCAAGCAATTGGTCCCTACCTGGGAGGAGATAGCCGCGGAGCT
CAAGGTACGTCAATGTCTGATTGGAACAAAAGCGATGGGTAGTGTTTGGG
GCTTCGAAGGGGCTGAAGAGCTAGAAGCACATTTTCGAAATTCCGCTTTT
GTGGCCTCAATATGGGCATGGTCCAACAATTTTTCGCGGCACCGCTCACA
CATTTTGACTCGCGCATGCCCGATTTTCAAATCAAATATAGGGTGAGGTG
AATATCGCCAAAGTTGATGCCACTGTCAGCACCAATTTGGCTACGCGCTT
CGGCATTCGGGTACGTGTGCACGCGCGCACAAGTTGTCTTTTTCGAAAAT
AGATCCACTCTAGCTAGACGTTTTCCCCCTGTACACATAAATATATATAT
TTATGTGTGTGTGTGTGGTATATTTTTCTCCTCTGGTGCCTTCCACTGTC
ATTTCGGCCGTCACACTCATTGTTTTCCGATCGTCATCAGTGAAGCAATC
TTTCTTAATCAATCCAATACTTTGCTTCCATTTTTTGCAACTCAATGCAG
TTTTTCATCAACAATTTCGCAGGCCTTTCCCATGCTGAAGTTTTTTCATC
AAGGCAACCTCTACAACTACCGAGGACCTCGCGACGTAGAGCATCTGATG
GAATTTGCGCTGGTAGGTGTCGGGTTATTTTCTTAATAGCATTGCTTCGC
TTTACGCCCAGTATATTTGTCCACACTCTCTCCTTGCTCGACCGCTGCTG
CTAATTTATATTACGCCTTTTCGATAGATATGTTCGCCTGCTCATATGTA
GGACCTTCTACTACCTCACGTCGTGCTTATCAACCTTCCATGAAACCCAT
TGTCTACAAAACCTGATAGGGTGGATACAAGAGTACGCCTTCCGTCCCTG
TGCCCATCCCTCCCACGTTCGTGGAACTGGTCAAGTCACAGATAGCTGAA
TTGAAAGAAGGTGTAGAGGCTCTCTTCTATCAAATTGTGAAAGAGGTGGA
GGCGGTGTCGAAGGGAGAAAGGCCTTTGGACGCACCTTTCATCGTCATGA
TGAGCATGGTTTTCTTATTTTTCGGTGTCGTCATCCTGACTTTTGCATCT
CTCTTCACGGGGCCTGCGGCTTCCCTGGAAGACAAGGCGGTGATCGATGC
CAAGAAGAAGAAGTAAGCTCGCCCAACATGAGTACATATGTGGGGGGAAG
GACTTATAGAGAAGAGGAGCGATATGAAGGAAAGAAAGCGAAAAGAGGAC
CGACAGAATAGAAGACAAAATAATTAAAGAAAGGACCTGGGCGTTTGGAA
CTACACAGAAGTGAAATAGAAATCTAACAAAGCGTATGATTAAAC
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Coding sequence (CDS) from alignment at chr17:505513..507457-

>NO17G01740.1 ID=NO17G01740.1|Name=NO17G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr17:505513..507457- (Nannochloropsis oceanica)
ATGAAGATGAAAGGCCACGCCACCTCCTGCTTTGTGGCTATTCTGAGCGT
AATTTTCTTGGTCTCGGCATCGGAGGTCGTCGAGCTCACGGATGCCAATT
TTGAGCATCTTACTCAGGCCTCCACAGGTGCCACAACTGGCGATTGGTTT
GTTGCTTTCTCCGCTCCGTGGTGTGGACATTGCAAGCAATTGGTCCCTAC
CTGGGAGGAGATAGCCGCGGAGCTCAAGGGTGAGGTGAATATCGCCAAAG
TTGATGCCACTGTCAGCACCAATTTGGCTACGCGCTTCGGCATTCGGGCC
TTTCCCATGCTGAAGTTTTTTCATCAAGGCAACCTCTACAACTACCGAGG
ACCTCGCGACGTAGAGCATCTGATGGAATTTGCGCTGGGTGGATACAAGA
GTACGCCTTCCGTCCCTGTGCCCATCCCTCCCACGTTCGTGGAACTGGTC
AAGTCACAGATAGCTGAATTGAAAGAAGGTGTAGAGGCTCTCTTCTATCA
AATTGTGAAAGAGGTGGAGGCGGTGTCGAAGGGAGAAAGGCCTTTGGACG
CACCTTTCATCGTCATGATGAGCATGGTTTTCTTATTTTTCGGTGTCGTC
ATCCTGACTTTTGCATCTCTCTTCACGGGGCCTGCGGCTTCCCTGGAAGA
CAAGGCGGTGATCGATGCCAAGAAGAAGAAGTAA
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Synonyms
Publications