NO17G01730, NO17G01730 (gene) Nannochloropsis oceanica

Overview
NameNO17G01730
Unique NameNO17G01730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4206
Alignment locationchr17:501307..505512 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:501307..505512 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO17G01730 vs. NCBI_GenBank
Match: EWM24285.1 (hypothetical protein Naga_100020g29 [Nannochloropsis gaditana])

HSP 1 Score: 388.7 bits (997), Expect = 5.600e-104
Identity = 223/409 (54.52%), Postives = 284/409 (69.44%), Query Frame = 0 
Query:  572 EKLESKTAALQHELRDQHMHLSQRLSVAVQRLALCEVKSGERYDFLKNALTEMALKLVKEDDVVALGPNPSIPDLLAELGIQRAETAHILERLEEETVALLSSCTQLQGSVQALATRDNQWAVLDARLHEHYQNLVNHCVVVMVRPFSLSSSQPSSGPEQLLKLEGRALLLKNETQDVIATHSYRIAKTIALKADYDVIRNSMERKDSLTDEECDASISQSRETYLTRFLDAVRTGVDKAI-VKDTGIGMRESLAQFYLKLEQAIRLALSKFSRIHVGRSLFGKIISPTQVTCLSCDRSLVEEKGLMLRRISLKKAATTSTVTTNATPAGTTTGPRRASLYRANASGFKTFSFVRETNFLENVLKDQRVRQPVSRGILIPSKNTPISGTTPPTTRLGRRAPSYAWGSSS 980
            + LESKTAA Q E RDQHM LSQRLSVA+QRLAL EVKSGERYD LKN L E+ALKLV++  V  LGP+PSIPDLL +L +QR E+   L RLE++   L  S  QL GSVQAL TR N WA LD RL E++++LV HC  +  R     SS  S GP+Q+L+L+GR LLLK ET D+IA+HSYRIAKTIALKADYD+IR+++E KD+LTD +CDA I QSRETYL RFL  V+  V+  +  +    G+ E + QF+ KLEQAIRLALSKFSRIH GRSLFGKI    +  CL+C+R   EE G   RR S +K+ T S  + NA  +G+    +R S+YR N + FKTFS  +E +FLEN +K+QR R+  +R  ++ +     +  + P  R GRRA SY+ G+++
Sbjct:    3 DDLESKTAATQREFRDQHMQLSQRLSVAIQRLALYEVKSGERYDLLKNTLLELALKLVRKKVVAGLGPDPSIPDLLTQLDVQRTESTDQLLRLEQDIEGLSGSYEQLHGSVQALVTRSNHWAALDVRLQEYHESLVKHCRHIFAR-----SSLSSYGPDQVLQLQGRGLLLKKETVDLIASHSYRIAKTIALKADYDIIRHNVESKDTLTDNQCDAKILQSRETYLMRFLGGVKRAVEVGLDGEGRASGITEIITQFHSKLEQAIRLALSKFSRIHTGRSLFGKISLEAEAACLACNRQFPEEPGQGDRRASFRKSVTGSN-SINAI-SGSNGISQRGSIYRQNRNSFKTFSSSKEASFLENAIKEQRGRRSDARENVVST-----ARASTPANRQGRRATSYSLGTAT 399
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BLAST of NO17G01730 vs. NCBI_GenBank
Match: CBJ33731.1 (myosin-like antigen [Ectocarpus siliculosus])

HSP 1 Score: 84.0 bits (206), Expect = 3.000e-12
Identity = 89/375 (23.73%), Postives = 165/375 (44.00%), Query Frame = 0 
Query:  521 KDLSARFQALTDAQQAAEAHALALFTRQVARTDEIQAELAANL-------NHNMEALVEKLE--SKTAALQHELRDQHM----HLSQRLSVAVQRLALCEVKSGERYDFLKNALTEMALKLVKEDDVVALGPNPSIPDLLAELGIQRAETAHILERLEEETVALLSSCTQLQGSVQALATRDNQWAVLDARLHEHYQNLVNHC-----VVVMVRPFSLSSSQPSSGPEQLLKLEGRALLLKNETQDVIATHSYRIAKTIALKADYDVIRNSMERKDSLTDEECDASISQSRETYLTRFL-DAVRTGVDKAIVKDTGIGMRESLAQFYLKLEQAIRLALSKFSRIHVGRSLFGKI-ISPTQVTCLSCDRSLVEEKG 876
            +D SA    +   Q+     A        +  DE++A +  +L       N  M  L  ++E  + TAA   +  ++ +      ++ LS  V +L     K+   +D   + ++  A   +  D   +LG   +   L+ ++   +AE    +  LE   V+++++  +LQ S+ ALAT++ +W  L+ +   H Q L  H            PFSL       GP                 Q  ++  S  +AK +A +ADY+V R ++ RK+   D + D  + + R  ++ +F+ D V+       + D  +   E    F  KLE +++LA+SK+  I  G ++ GK+ + P   +C++CDR  ++  G
Sbjct:    2 QDKSASTMVVESMQETLIEQAKVQEENFQSSQDELKASMEKSLERRLSRFNQEMALLGTRVEEVATTAATSSDKINKEITAVRQSARELSGEVDKLQTLVQKNHTEFD--SHVMSSRAFIKMAADQQASLGKTST--KLVKDIDHFKAENGDRMTSLERSNVSVVTTMRRLQRSLDALATKEGRWDRLEVQTKRHVQVLGGHLADLEGAATCAEPFSL-------GPAM---------------QKHVSAVSQMVAKIVATRADYEVTRQAVNRKNPGEDSDWDRKVEELRIRFMNKFVSDVVQVASKLRPLPDRPV--EEVRETFATKLELSMKLAISKYKPIQAGATILGKVHLLP---SCMACDRPFIDNPG 345
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BLAST of NO17G01730 vs. NCBI_GenBank
Match: CBN79691.1 (hypothetical protein Esi_0368_0016 [Ectocarpus siliculosus])

HSP 1 Score: 80.1 bits (196), Expect = 4.300e-11
Identity = 63/217 (29.03%), Postives = 104/217 (47.93%), Query Frame = 0 
Query:  642 SIPDLLAELGIQRAETAHILERLEEETVALLSSCTQLQGSVQALATRDNQWAVLDARLHEHYQNLVNHCVVVMVRPFSLSSSQPSSGPEQLLKLEGRALLLKNETQDVIATHSYRIAKTIALKADYDVIRNSMERKDS--LTDEECDASISQSRETYLTRFLDAVRTGVDKAIVK-DTGIGMRESLAQFYLKLEQAIRLALSKFSRIHVGRSLFGKI 856
            S+  L   L  Q  + A ++  L+  +V +++   +++  V AL+T+D  W  +D +L  H + +   C+ V     S  S                 + L  E Q  +A    R+AK +A+KADY+VIR  + + D+   T ++ D  +   R+T + RFL   R  +DK   +  T     E   +F  KL  A+++ALSK+S    G +LFGKI
Sbjct:  662 SLAHLGTALRRQGEDAAQMVSTLQRSSVGIVTVLRKMEAGVHALSTKDLFWKAVDVKLAAHQRAVGEVCLDVEDATVSRRS----------------RITLSKEAQACLAGDMQRVAKLMAVKADYEVIR-ELAKLDTPEQTGQDWDERVEFLRQTQMRRFLKDCRDALDKTAPEVRTNFNGEEIRGKFMGKLSDALKVALSKYSPTTPGATLFGKI 861
The following BLAST results are available for this feature:
BLAST of NO17G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM24285.15.600e-10454.52hypothetical protein Naga_100020g29 [Nannochlorops... [more]
CBJ33731.13.000e-1223.73myosin-like antigen [Ectocarpus siliculosus][more]
CBN79691.14.300e-1129.03hypothetical protein Esi_0368_0016 [Ectocarpus sil... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002955NSK002955Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01730.1NO17G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672954gene_7719Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g29gene6231Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01730.1NO17G01730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01730 ID=NO17G01730|Name=NO17G01730|organism=Nannochloropsis oceanica|type=gene|length=4206bp
CACACAGATCGACACATCTCTGGCTTTCGGCGTGCAAGGAAGCAAAACCC
ACCAAAAAGAGTGTGTGCTGCGGAGCCTCCGTTCTGCTCTTTAAATATGG
CCTTGTCGTCATCGTCGCTGACTGATCCGGGCACTGCAACCAACGTGAAC
GTTATCGGAGACTCCATGACCACTCCCGACAAAAGCAAACTCGCCGATTA
CCTCAATAAGgtgagtatgaatgtcctacttcatgtgaatctttgcttct
ggcctcacaacaatgtctatatctctcaaggattcgaggggctgcaatgg
ttttgagtactcagtcgctctcacttctgcatgcaccaacacgatgaagt
cccaaaagaatgttgaagagccatgcctgcgcgcgaaacctaatcatttt
tttatgtcaacaagttaatctgtgcgctttttttctacatccttatagTT
AGAGCACCGTAATTTGGTGACTGATGCAGGGTTTACCCGCATATCCCGTG
AGGGGACGGCCACAAGCAAAGGCACGACACGTTCCTCATTTCGGAATCCC
AAAAGTGTGACGGCAGTCCCAGGCGCCGGTGAAGAGAACGAGGACCTGCT
GTACCATCATTTTGTCGCGAGTCCTCGAACTGAATATGAATGTTTGGAGA
AGGAGGAGAGGGCTCTGCGGGTCAATAATATTTATGAAACTCGAAGCACC
TCTGTGGAGAAGAATGATGCTGGCTCTGGGCTAATTACCCCGCCCTTGTC
TTCCGACGAGCAATCAGAACGAGCTCTTGTACACGAGCGGGTAGCTTCAC
GCAAGACATTTTCCTCGTCGGCCTCCTCTCTCTCCCTGTCGTCTTCCTCG
TCCTCTTCGGCAGACGAACGTCTTGGCCCTCCTCCACATTCTCGGATTGA
ACACTTGGCACCTTCTCCGCCAATTTCTCAGAACCGCCAGTCCGCTGAGA
CCGCATCCCATAGTCGTCGTCCGCATAAACGCTCGGCATCCTGCAACAGT
GATATCAGTGGTCACATTTGTAATGTCAACTTCGCCAATGGACGAGCAGC
CACCATCACCTGGGAGGGGCTCAACTTCACACAGGACGCACTGCGGGAAA
CCATGGACGAACTTCGCGAAGTAgtaagtaggagtgacccctgctttttc
taacacgttgtgggtgctccacataatatcctccatttacctttctaatg
cctgtactttaatgcagcaggctttaatgcgtctgtccgcttggtaaacc
tcacaaactaaatttatgatgctctttcgttttaacgtctagaaacactt
caacgcaatataaatgggcggcatttattcccgtattcccgctttccccc
cctccccgcccgattctccagGTGGCAAACTTAAATATAAAGGTGAAGGA
GGTGGAGATGGAATCAAAACAGCGTGCCAAGATGCAGGTGGCGAAGGACA
CGGCGCAATATGAGTTTTTAGAAATGGAGCTGAAGAAACTGAGCCGTCAG
GTAGCGGTAAGACTCAGTCACACTGAGCTTCTGGATATGGCAGCTATGCA
GAACCAAAAGCTCAAGAGCCTTGAGACAGCTATTTTGGGAGTGATTGACG
AGAGGGCTGAATCCCTCCACCATAAGTTGTATGGCGAGTTGGAAATAGTG
GTCAAGCAGCTCTACGCCATCCAGCAAACCGGAGAAAAATGTCGCAAATT
TGTTGAAGACCGGGTCAAGCAGTTCGTGATGGATCACACGGGACTGGAAA
ACGAGCTGCAAAAGGAGCGAAGGGAGAAGGAAGAACTGAAGTGCCAATAC
AAGCGCTTGGCTGAACGGCTACTGCAAGTGGAGTCGAGGCAGGTGGAGAC
CGCAATGCGGCAGGATGCAGGCCTCAAAGACTTCGAAAAGCAGTGCAATC
AGTGCTTGATCGCGGAGTCCAGTAACCGGCAACAAGACTTAATGGGCATG
GCCACTGCTCTGCGCGATGATCTTGCCGAAAACATGGAGGCAGTCCGTCA
GGAAAGGGCGGCGCTAAGGATGGAACTTGTGGCGCACTGTGAAACTGCGG
TGACAAGCTGCACCGCATTGCATTCGCAGAGCCTGGTCAAGATAGAATCC
AACCTCCGACACGACGTCACCAACCAGCTTGACAGCACCCACAAAGACCT
CTCGGCACGATTCCAAGCATTGACGGACGCCCAGCAGGCCGCTGAAGCGC
ATGCGCTGGCTCTGTTCACGCGCCAAGTGGCGCGTACCGACGAGATCCAG
GCTGAGCTAGCAGCGAACTTGAACCATAACATGGAGGCACTAGTGGAGAA
GTTAGAATCCAAGACGGCGGCACTCCAACACGAGCTACGGGATCAACACA
TGCACCTGTCACAGCGCCTCAGCGTCGCCGTGCAGCGCCTCGCGTTGTGT
GAAGTCAAGTCTGGGGAAAGGTATGACTTTCTCAAAAACGCCCTGACGGA
GATGGCATTAAAGCTTGTTAAGGAGGATGATGTGGTGGCGCTTGGTCCGA
ATCCGTCGATTCCAGACTTGCTGGCCGAGCTTGGTATCCAACGGGCAGAG
ACCGCCCATATTCTGGAGCGACTCGAAGAGGAGACAGTCGCCTTGCTATC
ATCATGCACGCAGCTGCAAGGTAGTGTTCAAGCCCTTGCCACCCGCGACA
ACCAGTGGGCAGTCCTGGATGCGCGCCTCCACGAGCACTATCAGAATTTG
GTGAATCATTGTGTCGTCGTTATGGTCCGTCCTTTTTCACTGTCATCCTC
GCAGCCATCCTCCGGGCCAGAGCAGCTCCTAAAGTTGGAAGGGCGAGCCT
TGCTCTTAAAGAACGAGACGCAGGACGTCATTGCCACTCACAGCTACCGT
ATAGCCAAGACCATTGCCCTGAAGGCTGACTATGACGTGATTCGTAATAG
TATGGAGCGCAAGGACTCCTTGACTGACGAGGAATGCGATGCCAGCATTT
CGCAATCGCGCGAGACGTACCTCACGCGGTTCTTGGACGCCGTCAGGACA
GGCGTGGACAAAGCTATTGTCAAAGACACGGGAATCGGCATGAGGGAAAG
TCTAGCGCAGTTTTACCTGAAGCTGGAACAAGCAATTCGCTTGGCATTGA
GTAAATTTTCTCGTATCCACGTAGGTCGCTCGTTGTTTGGTAAGATCATT
TCGCCTACTCAAGTAACGTGCTTGTCTTGCGACCGCTCACTTGTCGAAGA
AAAAGgtacgcatctgtatactttgtaacatttgataaggagcgtgaacg
acctttatggtgaggctgagagttagtgtttaagaagaggttttcgtgtc
caattataagggcatgccgctggtccctgctttgattggtatttgatgtg
acctattcgccttcatttacgttctctttgattatctgccaaaaatacca
ttaaaacgttatacagGGCTAATGCTTCGCCGGATATCGCTGAAAAAGGC
CGCCACAACAAGTACAGTGACCACGAATGCTACCCCCGCCGGCACCACCA
CAGGCCCGCGGCGCGCCTCCCTTTACCGCGCCAACGCCAGTGGCTTCAAA
ACCTTTTCTTTTGTCAGAGAGACTAATTTCCTGGAAAATgtaaggttcac
gtactgtatcatcataatagtggggtgaatgttaaaggaagtagaaagtg
cgagcctatttgtgttgaaggacgtttatttcatgcgcgcatgtgcatat
ttgtgcggatttgcgtgtcacttcttctatgtacttccgagtcgtgaaga
ataaacggtgcattgtactccatgcctgtgccatagttattgcctcctcc
acaaatgttctgattctttttcacgtaaacatacacagGTGCTCAAGGAC
CAACGTGTTCGACAACCAGTTTCTCGAGGAATCCTCATCCCAAGCAAGAA
TACCCCCATCTCAGGCACCACTCCCCCCACTACCCGCCTCGGGCGACGTG
CACCAAGCTACGCCTGGGGATCCTCCAGCGGACATGATGGCCGAAATCAG
AAACTTCCGAGTATTGTCTAGCCACTCACACAGTATGCACAAAACAAAAC
AACACACCAACAACTGAAACATACAAAAACCATCTGACTCATATGCTTTA
TATGTTGGATCGGACCCACAATTTTCATAATAGAAACACAATCAAATTAA
GCCACGTGGCGGAAGTCCAGATATTAAGGCAAAAACACTCAACAAATAGA
CGAGCG
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protein sequence of NO17G01730.1

>NO17G01730.1-protein ID=NO17G01730.1-protein|Name=NO17G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=993bp
MALSSSSLTDPGTATNVNVIGDSMTTPDKSKLADYLNKLEHRNLVTDAGF
TRISREGTATSKGTTRSSFRNPKSVTAVPGAGEENEDLLYHHFVASPRTE
YECLEKEERALRVNNIYETRSTSVEKNDAGSGLITPPLSSDEQSERALVH
ERVASRKTFSSSASSLSLSSSSSSSADERLGPPPHSRIEHLAPSPPISQN
RQSAETASHSRRPHKRSASCNSDISGHICNVNFANGRAATITWEGLNFTQ
DALRETMDELREVVANLNIKVKEVEMESKQRAKMQVAKDTAQYEFLEMEL
KKLSRQVAVRLSHTELLDMAAMQNQKLKSLETAILGVIDERAESLHHKLY
GELEIVVKQLYAIQQTGEKCRKFVEDRVKQFVMDHTGLENELQKERREKE
ELKCQYKRLAERLLQVESRQVETAMRQDAGLKDFEKQCNQCLIAESSNRQ
QDLMGMATALRDDLAENMEAVRQERAALRMELVAHCETAVTSCTALHSQS
LVKIESNLRHDVTNQLDSTHKDLSARFQALTDAQQAAEAHALALFTRQVA
RTDEIQAELAANLNHNMEALVEKLESKTAALQHELRDQHMHLSQRLSVAV
QRLALCEVKSGERYDFLKNALTEMALKLVKEDDVVALGPNPSIPDLLAEL
GIQRAETAHILERLEEETVALLSSCTQLQGSVQALATRDNQWAVLDARLH
EHYQNLVNHCVVVMVRPFSLSSSQPSSGPEQLLKLEGRALLLKNETQDVI
ATHSYRIAKTIALKADYDVIRNSMERKDSLTDEECDASISQSRETYLTRF
LDAVRTGVDKAIVKDTGIGMRESLAQFYLKLEQAIRLALSKFSRIHVGRS
LFGKIISPTQVTCLSCDRSLVEEKGLMLRRISLKKAATTSTVTTNATPAG
TTTGPRRASLYRANASGFKTFSFVRETNFLENVLKDQRVRQPVSRGILIP
SKNTPISGTTPPTTRLGRRAPSYAWGSSSGHDGRNQKLPSIV*
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Synonyms
Publications