NO17G01720, NO17G01720 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO17G01720 vs. NCBI_GenBank
Match: CBN77896.1 (peptidyl-tRNA hydrolase [Ectocarpus siliculosus]) HSP 1 Score: 137.9 bits (346), Expect = 6.100e-29 Identity = 70/147 (47.62%), Postives = 92/147 (62.59%), Query Frame = 0 Query: 174 MTRHNAGFLVIDELAKRMGVNFKLRSAFQGEYGSTTYQGKSIGLLKPTTYMNNSGQSVRKVCGYKGGIHSWGEMDFSCLCLYFPCFPFFAPQQVLDYFKLPLSSVLVVVDEVALEMGQIRLRQTGSAGGHNGLKSIEGHLKSKDYNR 321 MTRHNAGFLV +ELA+R G K+++AFQGEY S KS+G+L+P TYMNNSG S RK V+D+FKLP+++ +V+VDEVAL+ GQ+RL+ G AGGHNGLKS++ HLK+ +Y R Sbjct: 1 MTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVNDKSVGILRPITYMNNSGMSARK---------------------------------VMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTR 114
BLAST of NO17G01720 vs. NCBI_GenBank
Match: PCI77966.1 (aminoacyl-tRNA hydrolase [Candidatus Aerophobetes bacterium]) HSP 1 Score: 136.0 bits (341), Expect = 2.300e-28 Identity = 71/166 (42.77%), Postives = 97/166 (58.43%), Query Frame = 0 Query: 155 SQSKNLLIVGLGNPGKDYTMTRHNAGFLVIDELAKRMGVNFKLRSAFQGEYGSTTYQGKSIGLLKPTTYMNNSGQSVRKVCGYKGGIHSWGEMDFSCLCLYFPCFPFFAPQQVLDYFKLPLSSVLVVVDEVALEMGQIRLRQTGSAGGHNGLKSIEGHLKSKDYNR 321 S LL+VGLGNPG Y TRHN GF+V++ A+++G +F + F + +TT+QG + LLKP TYMN SG+SVRK V+DY+K+ LS++LVV D+V L G++R RQ GSA GHNGLK+IE HL + +Y+R Sbjct: 3 SNQSPLLVVGLGNPGAKYVNTRHNIGFIVLEAWAEKLGASFAAKKQFLAQLATTTHQGVKVFLLKPETYMNLSGESVRK---------------------------------VVDYYKIDLSNILVVADDVYLPTGELRYRQKGSAAGHNGLKNIEKHLGTSEYSR 135
BLAST of NO17G01720 vs. NCBI_GenBank
Match: WP_011432367.1 (peptidyl-tRNA hydrolase [Synechococcus sp. JA-2-3B'a(2-13)] >Q2JNF7.1 RecName: Full=Peptidyl-tRNA hydrolase; Short=PTH >ABD01709.1 peptidyl-tRNA hydrolase [Synechococcus sp. JA-2-3B'a(2-13)]) HSP 1 Score: 133.7 bits (335), Expect = 1.100e-27 Identity = 75/171 (43.86%), Postives = 96/171 (56.14%), Query Frame = 0 Query: 150 QPAKLSQSKNLLIVGLGNPGKDYTMTRHNAGFLVIDELAKRMGVNFKLRSAFQGEYGSTTYQGKSIGLLKPTTYMNNSGQSVRKVCGYKGGIHSWGEMDFSCLCLYFPCFPFFAPQQVLDYFKLPLSSVLVVVDEVALEMGQIRLRQTGSAGGHNGLKSIEGHLKSKDYNR 321 +P ++ + L+VGLGNPG Y TRHN GF+V+D LA+R G+ L FQG YG G LLKP TYMN SGQSVR VLD++KL L+SVLVV D++ L +G++RLR +GSAGGHNG+KSI HL S+ + R Sbjct: 5 KPKEVDEISLQLVVGLGNPGPQYANTRHNCGFMVVDRLAQRWGIPLVLEKRFQGSYGEGFALGGKRRLLKPETYMNRSGQSVR---------------------------------AVLDWYKLDLASVLVVYDDMDLPLGRLRLRGSGSAGGHNGMKSIIQHLGSEAFPR 142
BLAST of NO17G01720 vs. NCBI_GenBank
Match: OLO27428.1 (aminoacyl-tRNA hydrolase [Bacillus pseudofirmus]) HSP 1 Score: 133.7 bits (335), Expect = 1.100e-27 Identity = 73/163 (44.79%), Postives = 94/163 (57.67%), Query Frame = 0 Query: 158 KNLLIVGLGNPGKDYTMTRHNAGFLVIDELAKRMGVNFKLRSAFQGEYGSTTYQGKSIGLLKPTTYMNNSGQSVRKVCGYKGGIHSWGEMDFSCLCLYFPCFPFFAPQQVLDYFKLPLSSVLVVVDEVALEMGQIRLRQTGSAGGHNGLKSIEGHLKSKDYNR 321 K LIVGLGNPG Y TRHNAGF+VID+ AK MG+ K + F+G YGS G+ + LLKP TYMN SG+SVR PF +DYFK+ L V+++ D++ L +GQIRLRQ G GGHNG+KS+ HL + ++ R Sbjct: 6 KMKLIVGLGNPGAKYENTRHNAGFIVIDQCAKTMGIELK-ETKFKGVYGSAVVDGEKVFLLKPLTYMNLSGESVR---------------------------PF------MDYFKIDLEDVMIIFDDMDLPVGQIRLRQKGGHGGHNGIKSLNAHLGTNEFKR 134
BLAST of NO17G01720 vs. NCBI_GenBank
Match: WP_078429486.1 (MULTISPECIES: aminoacyl-tRNA hydrolase [Bacillus]) HSP 1 Score: 133.7 bits (335), Expect = 1.100e-27 Identity = 72/160 (45.00%), Postives = 93/160 (58.13%), Query Frame = 0 Query: 161 LIVGLGNPGKDYTMTRHNAGFLVIDELAKRMGVNFKLRSAFQGEYGSTTYQGKSIGLLKPTTYMNNSGQSVRKVCGYKGGIHSWGEMDFSCLCLYFPCFPFFAPQQVLDYFKLPLSSVLVVVDEVALEMGQIRLRQTGSAGGHNGLKSIEGHLKSKDYNR 321 LIVGLGNPG Y TRHNAGF+VID+ AK MG+ K + F+G YGS G+ + LLKP TYMN SG+SVR PF +DYFK+ L V+++ D++ L +GQIRLRQ G GGHNG+KS+ HL + ++ R Sbjct: 3 LIVGLGNPGAKYENTRHNAGFIVIDQCAKTMGIELK-ETKFKGVYGSAVVDGEKVFLLKPLTYMNLSGESVR---------------------------PF------MDYFKIDLEDVMIIFDDMDLPVGQIRLRQKGGHGGHNGIKSLNAHLGTNEFKR 128
BLAST of NO17G01720 vs. NCBI_GenBank
Match: WP_008787326.1 (MULTISPECIES: aminoacyl-tRNA hydrolase [Coprobacillus] >EFW06661.1 peptidyl-tRNA hydrolase [Coprobacillus sp. 29_1]) HSP 1 Score: 133.3 bits (334), Expect = 1.500e-27 Identity = 71/160 (44.38%), Postives = 96/160 (60.00%), Query Frame = 0 Query: 161 LIVGLGNPGKDYTMTRHNAGFLVIDELAKRMGVNFKLRSAFQGEYGSTTYQGKSIGLLKPTTYMNNSGQSVRKVCGYKGGIHSWGEMDFSCLCLYFPCFPFFAPQQVLDYFKLPLSSVLVVVDEVALEMGQIRLRQTGSAGGHNGLKSIEGHLKSKDYNR 321 LIVGLGNPGKDY TRHN GF+V+D L+ M V+ + F+GEY Y G+ + LLKP TYMNNSG+SVR QV+DYFK+ + +LVV D++ + +G++RLRQ+GSAGGHNG+KSI H+ ++ + R Sbjct: 3 LIVGLGNPGKDYENTRHNVGFMVMDRLSDVMNVSIS-TTKFKGEYVKFKYHGEDVILLKPMTYMNNSGESVR---------------------------------QVMDYFKIDVEDLLVVYDDMDMPVGKLRLRQSGSAGGHNGVKSIIAHVGTQSFQR 128
BLAST of NO17G01720 vs. NCBI_GenBank
Match: PCI94797.1 (aminoacyl-tRNA hydrolase [Candidatus Aerophobetes bacterium]) HSP 1 Score: 133.3 bits (334), Expect = 1.500e-27 Identity = 67/160 (41.88%), Postives = 93/160 (58.13%), Query Frame = 0 Query: 161 LIVGLGNPGKDYTMTRHNAGFLVIDELAKRMGVNFKLRSAFQGEYGSTTYQGKSIGLLKPTTYMNNSGQSVRKVCGYKGGIHSWGEMDFSCLCLYFPCFPFFAPQQVLDYFKLPLSSVLVVVDEVALEMGQIRLRQTGSAGGHNGLKSIEGHLKSKDYNR 321 LIVGLGNPGK Y MTRHN GFLV+++LA+R+G AF G +G + +GK + L P+T+MN SGQ+VR+ +DY+ L +L+V D+VAL G++R+R+ GSAGGHNGLK +E HL +++Y R Sbjct: 7 LIVGLGNPGKKYEMTRHNMGFLVVEKLAERLGATLSPNKAFMGRFGKASIEGKKVYFLLPSTFMNLSGQAVRR---------------------------------CIDYYNLTKERLLIVSDDVALPFGKLRIREKGSAGGHNGLKDVERHLGTQEYQR 133
BLAST of NO17G01720 vs. NCBI_GenBank
Match: KIF16951.1 (peptidyl-tRNA hydrolase [Aphanocapsa montana BDHKU210001] >KIF41956.1 peptidyl-tRNA hydrolase [Lyngbya confervoides BDU141951]) HSP 1 Score: 132.1 bits (331), Expect = 3.300e-27 Identity = 70/161 (43.48%), Postives = 94/161 (58.39%), Query Frame = 0 Query: 161 LIVGLGNPGKDYTMTRHNAGFLVIDELAKRMGVNFKLRSAFQGEYG-STTYQGKSIGLLKPTTYMNNSGQSVRKVCGYKGGIHSWGEMDFSCLCLYFPCFPFFAPQQVLDYFKLPLSSVLVVVDEVALEMGQIRLRQTGSAGGHNGLKSIEGHLKSKDYNR 321 LIVGLGNPG+ Y TRHN GF V+D LA+R ++ FQGE+G G+ + LLKPTTYMN SGQ+VR VLD++KLP S+LV+ D++AL +G++RLR GSAGGHNG+KS+ HL ++++ R Sbjct: 7 LIVGLGNPGEKYAQTRHNVGFDVLDALARRWQISLSNHRKFQGEFGEGMAIAGQKVFLLKPTTYMNRSGQAVR---------------------------------AVLDWYKLPPESILVIYDDMALPLGKLRLRPNGSAGGHNGMKSLIAHLNTQEFKR 134
BLAST of NO17G01720 vs. NCBI_GenBank
Match: WP_084607118.1 (aminoacyl-tRNA hydrolase [Lyngbya confervoides]) HSP 1 Score: 132.1 bits (331), Expect = 3.300e-27 Identity = 70/161 (43.48%), Postives = 94/161 (58.39%), Query Frame = 0 Query: 161 LIVGLGNPGKDYTMTRHNAGFLVIDELAKRMGVNFKLRSAFQGEYG-STTYQGKSIGLLKPTTYMNNSGQSVRKVCGYKGGIHSWGEMDFSCLCLYFPCFPFFAPQQVLDYFKLPLSSVLVVVDEVALEMGQIRLRQTGSAGGHNGLKSIEGHLKSKDYNR 321 LIVGLGNPG+ Y TRHN GF V+D LA+R ++ FQGE+G G+ + LLKPTTYMN SGQ+VR VLD++KLP S+LV+ D++AL +G++RLR GSAGGHNG+KS+ HL ++++ R Sbjct: 17 LIVGLGNPGEKYAQTRHNVGFDVLDALARRWQISLSNHRKFQGEFGEGMAIAGQKVFLLKPTTYMNRSGQAVR---------------------------------AVLDWYKLPPESILVIYDDMALPLGKLRLRPNGSAGGHNGMKSLIAHLNTQEFKR 144
BLAST of NO17G01720 vs. NCBI_GenBank
Match: WP_011243598.1 (MULTISPECIES: peptidyl-tRNA hydrolase [Synechococcus] >Q5N2J4.1 RecName: Full=Peptidyl-tRNA hydrolase; Short=PTH >Q31RR0.1 RecName: Full=Peptidyl-tRNA hydrolase; Short=PTH >BAD79476.1 peptidyl-tRNA hydrolase [Synechococcus elongatus PCC 6301] >ABB56259.1 peptidyl-tRNA hydrolase [Synechococcus elongatus PCC 7942] >AJD56692.1 peptidyl-tRNA hydrolase [Synechococcus sp. UTEX 2973]) HSP 1 Score: 131.7 bits (330), Expect = 4.300e-27 Identity = 73/168 (43.45%), Postives = 96/168 (57.14%), Query Frame = 0 Query: 154 LSQSKNLLIVGLGNPGKDYTMTRHNAGFLVIDELAKRMGVNFKLRSAFQGEYGSTTYQG-KSIGLLKPTTYMNNSGQSVRKVCGYKGGIHSWGEMDFSCLCLYFPCFPFFAPQQVLDYFKLPLSSVLVVVDEVALEMGQIRLRQTGSAGGHNGLKSIEGHLKSKDYNR 321 +S+ + L+VGLGNPG+ Y TRHN GF++ID LA+ GV FQGEYG T G I LLKPTT+MN SG+S+R VLD++KL +LV+ D++ L +G++RLRQ+GSAG HNG+KSI HL SKD+ R Sbjct: 1 MSEDRPTLLVGLGNPGQKYAETRHNIGFMLIDRLAQDWGVKLSEDRKFQGEYGETAVPGLGKIRLLKPTTFMNQSGRSLR---------------------------------AVLDWYKLTPQQILVIYDDMDLPLGRLRLRQSGSAGTHNGMKSIISHLSSKDFPR 135 The following BLAST results are available for this feature:
BLAST of NO17G01720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G01720 ID=NO17G01720|Name=NO17G01720|organism=Nannochloropsis oceanica|type=gene|length=3144bpback to top protein sequence of NO17G01720.1 >NO17G01720.1-protein ID=NO17G01720.1-protein|Name=NO17G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=348bpback to top protein sequence of NO17G01720.2 >NO17G01720.2-protein ID=NO17G01720.2-protein|Name=NO17G01720.2|organism=Nannochloropsis oceanica|type=polypeptide|length=381bpback to top protein sequence of NO17G01720.3 >NO17G01720.3-protein ID=NO17G01720.3-protein|Name=NO17G01720.3|organism=Nannochloropsis oceanica|type=polypeptide|length=316bpback to top protein sequence of NO17G01720.4 >NO17G01720.4-protein ID=NO17G01720.4-protein|Name=NO17G01720.4|organism=Nannochloropsis oceanica|type=polypeptide|length=349bpback to top Synonyms
Publications
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