NO17G01720.4, NO17G01720.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01720.4
Unique NameNO17G01720.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2943
Alignment locationchr17:497855..500998 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:497855..500998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO17G01720.4 vs.
Match: CBN77896.1 (peptidyl-tRNA hydrolase [Ectocarpus siliculosus])

HSP 1 Score: 138.7 bits (348), Expect = 3.500e-29
Identity = 76/153 (49.67%), Postives = 96/153 (62.75%), Query Frame = 0
Query:  174 MTRHNAGFLVIDELAKRMGVNFKLRSAFQGEYGSTTYQGKSIGLLKPTTYMNNSGQSVRKVCGYKGGIHSWGEMDFSCLCLYFPCFPFFAPQQVLDYFKLPLSSVLVVVDEVALEMGQIRLRQTGSAGGHNGLKSIEGHLKSKDYNRLRIGVG 327
            MTRHNAGFLV +ELA+R G   K+++AFQGEY S     KS+G+L+P TYMNNSG S RKV            MDF           F  P          +++ +V+VDEVAL+ GQ+RL+  G AGGHNGLKS++ HLK+ +Y RLRIGVG
Sbjct:    1 MTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVNDKSVGILRPITYMNNSGMSARKV------------MDF-----------FKLP----------MNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVG 120          
The following BLAST results are available for this feature:
BLAST of NO17G01720.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN77896.13.500e-2949.67peptidyl-tRNA hydrolase [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01720NO17G01720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01720.4NO17G01720.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01720.4.cds1NO17G01720.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01720.4.cds2NO17G01720.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01720.4 ID=NO17G01720.4|Name=NO17G01720.4|organism=Nannochloropsis oceanica|type=mRNA|length=2943bp
TCCATGAATCTATTCTCTATTTTCGTCTTTGGCTGCCCTATCTTTTTCTT
TTCGTGTACACACGCATTGCTGTCCCACTCATGCCTCTGTCAATGGAATC
GCCGCCTCCTAACGATAGCTCTGAAACGCGACTGTTGCTATTGCTAGTTT
TTTAGGACGCGCATACCTATGCGTCTGTATCTCTCTCAGGATGAAAGGAT
AACAAACTGTACATATGTATGTAAGTATATATATATTAGTACGGTACTTA
GCGTATTGGGCGCAGCGGTGCGGGTGGATGAGGAAAGGGCTGCTAGCACC
CGCCGATCACAGTTCCTCTTACTCCATCCACCATCCCCCCTCCGAATCCA
ATCTGTCAAAGTCGTTATCGCTTTCTTCTACCATATATTATCTTCTCTCC
CATTCCATTGTTGAGTCTGTCTGCTGCTCTTTTTCATCTTTCCTGTTCTC
ATCGTCAACCACCACGACCTCAATCATCTCCTGCTTCTACTTTGCTACTA
CCCCTCCTACCCCTCCTCCTGCTCCTCTGCTCTTGTTCCTGCTGACTCAA
TATCTTCCCTGTGTATGCTTAACTGGCAATCAGGCAGCATGATTGACGCA
TAGTTGTGGGGAATGTGGAAGTCGTGGTCGAGGGATGGGCTAGGAGGCTC
TTGCGAGGGTCGCCAGGCGGACGGTACAGATTGAGGCAGGAGACATAGGT
CCCCCCAAGTTTAGTCCCGCAATTTTAGACCAGTGACAGATCACAACCAG
AATATTACTGTTCGCTGCTAGGGAGTAAAACTCCCTTGTGGTCTAGCCAG
ACCGTATGTTCGTGGCAGCGAATGCTCTTTCCGATCCCGCGAGATCTCGA
GAGAGGAAAGGGCTTGCGGGGGTTGAGAAAGAGATGTCCATGGCAAAAGC
GCCTAATGTTCGTCCGTACTCCAAGATTCCCACCCAACTTGCCCTTCTCT
GCCCAAATGTATTTCTTGCGTAGCTTCTGGATAGGCCGACTTTTCGTGGT
CTACGGGATCCTCCTCCTCTTAATTGTGCACGATCTTGTTGAGGCGCAAG
GTTTGACCCCCCGGCGACCTACCTCCTGGCGGGAACTCATCGTTTTGGTT
GGCTTCACCAGCTCGCCTTTTGATGCTTTCGGTGGTGTGGCAAGCTCTGC
GGGTGGAAAAATCGACACAACGTACTTTGGCTTGTGCTTGTGGAAGTCCA
AGCCAGGAAGATGCCCTCAGAGGCTCGACAGCCACTGTGCCGCCGTTTAA
CTTGTTCGCCACATACGCGTGCTAAGCTACAGGCGGGTCTCGAGGAGGAT
GCGTGACTGGGCTACTTATGACTCATTAGCACGTCTATCTTTATGTAGTC
AACCATAACGCACACGCCTCACACAGCGCAGGCAAGAAAGTCGACATCCA
ACCTCCTTCCCACCACGCGTCGAGCAGCACGCCCGCTACATGCTGTCCCG
CCTTCGCAACTGCACAAGAAGAGGACACCGGTCGGTTCCTGGGCTGCTTC
TTCTCTACTTTAGCGTCGTCCTCATGGTGATGAGTCGCTTGCCAGGAGCG
GGGGGCTTTCTTTTGGCGTCCTGTTCTTCTTCCCGGGCAAGTCTGTTGTC
GGACGCGCATCGAGCGAATGTGGGGTCGGCCGTCACGACCATACTGTCGT
GGTATGTTCCTAGATCAGGAAACCGAATCCTGACGTCGAGCACGGCGGGA
AGCGATGACAGGAAAGCAGAGGGAGACGAAGCTACCTCCGACTCGATCCT
CACCACCCCGCAGCCACGACCATCGTCAACATTACCAGCAAGCCAAACAC
CAAAAACTGCAATAGGCATTCCCACTGGAAAGACGACAGGTGCCACCACG
GCAGCTGCTGCTGCGGCCGTGACCAAGAATAAACCACAACCGGCAAAATT
GTCTCAGAGCAAGAATCTGCTCATCGTGGGGCTCGGCAACCCTGGTAAAG
ATTATACCATGACCCGACACAACGCCGGCTTCCTAGTCATTGACGAATTG
GCCAAGCGGATGGGCGTGAATTTCAAACTTCGCAGCGCCTTTCAGGGGGA
ATATGGTTCGACCACATATCAGGGAAAGTCAATTGGTCTGCTCAAGCCCA
CCACCTATATGAACAACAGCGGCCAGTCTGTGCGCAAGGTATGTGGGTAC
AAAGGAGGCATTCATTCGTGGGGTGAAATGGATTTTTCATGTCTTTGTCT
TTATTTTCCGTGTTTCCCTTTTTTCGCGCCGCAACAGGTGCTGGACTACT
TCAAGCTGCCCCTGTCGTCGGTGCTAGTAGTGGTGGACGAGGTGGCCTTG
GAGATGGGGCAGATTCGCCTCCGCCAGACAGGGTCGGCGGGGGGGCACAA
CGGCCTCAAAAGTATCGAGGGGCACCTCAAATCGAAAGATTATAATCGTT
TGCGGATCGGTGTGGGGGGAGGTGGGTGTGGGTGGGTTGTCCGGAAAAGG
GGAAGAGGAAGAGGTAGAGAGGAGGTTACCTGCTAGACGCCTGGCTTTTG
ATTAGATGCTCAAATTCGACACATTTGAATACAACTCAGGCCTTAGTATG
GCTCGCAATATAGGATTTAAAACGAAAGCAACTCAGCTCAATTCTATCAC
CTCTCACCCTTTCGTATTCACTTGTACACTCAGCGGCGCCGGGCCGAATG
GTGGACCATGTCCTAGGCGAATTTAGTCGGTCGGAACGCAAGCTTTTGGA
CGACTTGCTGATGAACGCGGTGGAGGCCGTGGAGGACTGGATTGAAGACG
ACAATACCAACAATGTTATGACACGTGTCAATGCACCGCGATGAAAAAAA
TATTAAAAACAAAATACAGGCAAACAACCCTCTCAATCATTACAGGCAGT
AAAACAAATGCCGGCTCAGCATGTGCCATGTACATACATACAAAAGCAAC
TCTTAAGGAAGAAGAAAGAAGAATTGAACTACTAAAATTTGCA
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protein sequence of NO17G01720.4

>NO17G01720.4-protein ID=NO17G01720.4-protein|Name=NO17G01720.4|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MLSRLRNCTRRGHRSVPGLLLLYFSVVLMVMSRLPGAGGFLLASCSSSRA
SLLSDAHRANVGSAVTTILSWYVPRSGNRILTSSTAGSDDRKAEGDEATS
DSILTTPQPRPSSTLPASQTPKTAIGIPTGKTTGATTAAAAAAVTKNKPQ
PAKLSQSKNLLIVGLGNPGKDYTMTRHNAGFLVIDELAKRMGVNFKLRSA
FQGEYGSTTYQGKSIGLLKPTTYMNNSGQSVRKVCGYKGGIHSWGEMDFS
CLCLYFPCFPFFAPQQVLDYFKLPLSSVLVVVDEVALEMGQIRLRQTGSA
GGHNGLKSIEGHLKSKDYNRLRIGVGGGGCGWVVRKRGRGRGREEVTC*
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mRNA from alignment at chr17:497855..500998+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01720.4 ID=NO17G01720.4|Name=NO17G01720.4|organism=Nannochloropsis oceanica|type=mRNA|length=3144bp|location=Sequence derived from alignment at chr17:497855..500998+ (Nannochloropsis oceanica)
TCCATGAATCTATTCTCTATTTTCGTCTTTGGCTGCCCTATCTTTTTCTT TTCGTGTACACACGCATTGCTGTCCCACTCATGCCTCTGTCAATGGAATC GCCGCCTCCTAACGATAGCTCTGAAACGCGACTGTTGCTATTGCTAGTTT TTTAGGACGCGCATACCTATGCGTCTGTATCTCTCTCAGGATGAAAGGAT AACAAACTGTACATATGTATGTAAGTATATATATATTAGTACGGTACTTA GCGTATTGGGCGCAGCGGTGCGGGTGGATGAGGAAAGGGCTGCTAGCACC CGCCGATCACAGTTCCTCTTACTCCATCCACCATCCCCCCTCCGAATCCA ATCTGTCAAAGTCGTTATCGCTTTCTTCTACCATATATTATCTTCTCTCC CATTCCATTGTTGAGTCTGTCTGCTGCTCTTTTTCATCTTTCCTGTTCTC ATCGTCAACCACCACGACCTCAATCATCTCCTGCTTCTACTTTGCTACTA CCCCTCCTACCCCTCCTCCTGCTCCTCTGCTCTTGTTCCTGCTGACTCAA TATCTTCCCTGTGTATGCTTAACTGGCAATCAGGCAGCATGATTGACGCA TAGTTGTGGGGAATGTGGAAGTCGTGGTCGAGGGATGGGCTAGGAGGCTC TTGCGAGGGTCGCCAGGCGGACGGTACAGATTGAGGCAGGAGACATAGGT CCCCCCAAGTTTAGTCCCGCAATTTTAGACCAGTGACAGATCACAACCAG AATATTACTGTTCGCTGCTAGGGAGTAAAACTCCCTTGTGGTCTAGCCAG ACCGTATGTTCGTGGCAGCGAATGCTCTTTCCGATCCCGCGAGATCTCGA GAGAGGAAAGGGCTTGCGGGGGTTGAGAAAGAGATGTCCATGGCAAAAGC GCCTAATGTTCGTCCGTACTCCAAGATTCCCACCCAACTTGCCCTTCTCT GCCCAAATGTATTTCTTGCGTAGCTTCTGGATAGGCCGACTTTTCGTGGT CTACGGGATCCTCCTCCTCTTAATTGTGCACGATCTTGTTGAGGCGCAAG GTTTGACCCCCCGGCGACCTACCTCCTGGCGGGAACTCATCGTTTTGGTT GGCTTCACCAGCTCGCCTTTTGATGCTTTCGGTGGTGTGGCAAGCTCTGC GGGTGGAAAAATCGACACAACGTACTTTGGCTTGTGCTTGTGGAAGTCCA AGCCAGGAAGATGCCCTCAGAGGCTCGACAGCCACTGTGCCGCCGTTTAA CTTGTTCGCCACATACGCGTGCTAAGCTACAGGCGGGTCTCGAGGAGGAT GCGTGACTGGGCTACTTATGACTCATTAGCACGTCTATCTTTATGTAGTC AACCATAACGCACACGCCTCACACAGCGCAGGCAAGAAAGTCGACATCCA ACCTCCTTCCCACCACGCGTCGAGCAGCACGCCCGCTACATGCTGTCCCG CCTTCGCAACTGCACAAGAAGAGGACACCGGTCGGTTCCTGGGCTGCTTC TTCTCTACTTTAGCGTCGTCCTCATGGTGATGAGTCGCTTGCCAGGAGCG GGGGGCTTTCTTTTGGCGTCCTGTTCTTCTTCCCGGGCAAGTCTGTTGTC GGACGCGCATCGAGCGAATGTGGGGTCGGCCGTCACGACCATACTGTCGT GGTATGTTCCTAGGTACGTGCAAACATGCATCAAAGGGGTCATGAAAGGT TGACCATGGCAAGCGAAGGAGTTTTCAGCTTGGAGAAAGCAACAGAGCGT ACTTGCTGGCACAGACGCGTGCAACCTCTCGCCGGCAACCCTTGAGATCG ACAAAATTTTCAATCAGGCAGATATTTATTCAGGCATTCATACATCCATG TTTATTCATCACAGATCAGGAAACCGAATCCTGACGTCGAGCACGGCGGG AAGCGATGACAGGAAAGCAGAGGGAGACGAAGCTACCTCCGACTCGATCC TCACCACCCCGCAGCCACGACCATCGTCAACATTACCAGCAAGCCAAACA CCAAAAACTGCAATAGGCATTCCCACTGGAAAGACGACAGGTGCCACCAC GGCAGCTGCTGCTGCGGCCGTGACCAAGAATAAACCACAACCGGCAAAAT TGTCTCAGAGCAAGAATCTGCTCATCGTGGGGCTCGGCAACCCTGGTAAA GATTATACCATGACCCGACACAACGCCGGCTTCCTAGTCATTGACGAATT GGCCAAGCGGATGGGCGTGAATTTCAAACTTCGCAGCGCCTTTCAGGGGG AATATGGTTCGACCACATATCAGGGAAAGTCAATTGGTCTGCTCAAGCCC ACCACCTATATGAACAACAGCGGCCAGTCTGTGCGCAAGGTATGTGGGTA CAAAGGAGGCATTCATTCGTGGGGTGAAATGGATTTTTCATGTCTTTGTC TTTATTTTCCGTGTTTCCCTTTTTTCGCGCCGCAACAGGTGCTGGACTAC TTCAAGCTGCCCCTGTCGTCGGTGCTAGTAGTGGTGGACGAGGTGGCCTT GGAGATGGGGCAGATTCGCCTCCGCCAGACAGGGTCGGCGGGGGGGCACA ACGGCCTCAAAAGTATCGAGGGGCACCTCAAATCGAAAGATTATAATCGT TTGCGGATCGGTGTGGGGGGAGGTGGGTGTGGGTGGGTTGTCCGGAAAAG GGGAAGAGGAAGAGGTAGAGAGGAGGTTACCTGCTAGACGCCTGGCTTTT GATTAGATGCTCAAATTCGACACATTTGAATACAACTCAGGCCTTAGTAT GGCTCGCAATATAGGATTTAAAACGAAAGCAACTCAGCTCAATTCTATCA CCTCTCACCCTTTCGTATTCACTTGTACACTCAGCGGCGCCGGGCCGAAT GGTGGACCATGTCCTAGGCGAATTTAGTCGGTCGGAACGCAAGCTTTTGG ACGACTTGCTGATGAACGCGGTGGAGGCCGTGGAGGACTGGATTGAAGAC GACAATACCAACAATGTTATGACACGTGTCAATGCACCGCGATGAAAAAA ATATTAAAAACAAAATACAGGCAAACAACCCTCTCAATCATTACAGGCAG TAAAACAAATGCCGGCTCAGCATGTGCCATGTACATACATACAAAAGCAA CTCTTAAGGAAGAAGAAAGAAGAATTGAACTACTAAAATTTGCA
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Coding sequence (CDS) from alignment at chr17:497855..500998+

>NO17G01720.4 ID=NO17G01720.4|Name=NO17G01720.4|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at chr17:497855..500998+ (Nannochloropsis oceanica)
ATGCTGTCCCGCCTTCGCAACTGCACAAGAAGAGGACACCGGTCGGTTCC
TGGGCTGCTTCTTCTCTACTTTAGCGTCGTCCTCATGGTGATGAGTCGCT
TGCCAGGAGCGGGGGGCTTTCTTTTGGCGTCCTGTTCTTCTTCCCGGGCA
AGTCTGTTGTCGGACGCGCATCGAGCGAATGTGGGGTCGGCCGTCACGAC
CATACTGTCGTGGTATGTTCCTAGATCAGGAAACCGAATCCTGACGTCGA
GCACGGCGGGAAGCGATGACAGGAAAGCAGAGGGAGACGAAGCTACCTCC
GACTCGATCCTCACCACCCCGCAGCCACGACCATCGTCAACATTACCAGC
AAGCCAAACACCAAAAACTGCAATAGGCATTCCCACTGGAAAGACGACAG
GTGCCACCACGGCAGCTGCTGCTGCGGCCGTGACCAAGAATAAACCACAA
CCGGCAAAATTGTCTCAGAGCAAGAATCTGCTCATCGTGGGGCTCGGCAA
CCCTGGTAAAGATTATACCATGACCCGACACAACGCCGGCTTCCTAGTCA
TTGACGAATTGGCCAAGCGGATGGGCGTGAATTTCAAACTTCGCAGCGCC
TTTCAGGGGGAATATGGTTCGACCACATATCAGGGAAAGTCAATTGGTCT
GCTCAAGCCCACCACCTATATGAACAACAGCGGCCAGTCTGTGCGCAAGG
TATGTGGGTACAAAGGAGGCATTCATTCGTGGGGTGAAATGGATTTTTCA
TGTCTTTGTCTTTATTTTCCGTGTTTCCCTTTTTTCGCGCCGCAACAGGT
GCTGGACTACTTCAAGCTGCCCCTGTCGTCGGTGCTAGTAGTGGTGGACG
AGGTGGCCTTGGAGATGGGGCAGATTCGCCTCCGCCAGACAGGGTCGGCG
GGGGGGCACAACGGCCTCAAAAGTATCGAGGGGCACCTCAAATCGAAAGA
TTATAATCGTTTGCGGATCGGTGTGGGGGGAGGTGGGTGTGGGTGGGTTG
TCCGGAAAAGGGGAAGAGGAAGAGGTAGAGAGGAGGTTACCTGCTAG
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Synonyms
Publications