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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr17 | genome | chr17:497855..500998 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G01720.4 vs.
Match: CBN77896.1 (peptidyl-tRNA hydrolase [Ectocarpus siliculosus]) HSP 1 Score: 138.7 bits (348), Expect = 3.500e-29 Identity = 76/153 (49.67%), Postives = 96/153 (62.75%), Query Frame = 0
Query: 174 MTRHNAGFLVIDELAKRMGVNFKLRSAFQGEYGSTTYQGKSIGLLKPTTYMNNSGQSVRKVCGYKGGIHSWGEMDFSCLCLYFPCFPFFAPQQVLDYFKLPLSSVLVVVDEVALEMGQIRLRQTGSAGGHNGLKSIEGHLKSKDYNRLRIGVG 327
MTRHNAGFLV +ELA+R G K+++AFQGEY S KS+G+L+P TYMNNSG S RKV MDF F P +++ +V+VDEVAL+ GQ+RL+ G AGGHNGLKS++ HLK+ +Y RLRIGVG
Sbjct: 1 MTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVNDKSVGILRPITYMNNSGMSARKV------------MDF-----------FKLP----------MNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVG 120
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G01720.4 ID=NO17G01720.4|Name=NO17G01720.4|organism=Nannochloropsis oceanica|type=mRNA|length=2943bp TCCATGAATCTATTCTCTATTTTCGTCTTTGGCTGCCCTATCTTTTTCTT TTCGTGTACACACGCATTGCTGTCCCACTCATGCCTCTGTCAATGGAATC GCCGCCTCCTAACGATAGCTCTGAAACGCGACTGTTGCTATTGCTAGTTT TTTAGGACGCGCATACCTATGCGTCTGTATCTCTCTCAGGATGAAAGGAT AACAAACTGTACATATGTATGTAAGTATATATATATTAGTACGGTACTTA GCGTATTGGGCGCAGCGGTGCGGGTGGATGAGGAAAGGGCTGCTAGCACC CGCCGATCACAGTTCCTCTTACTCCATCCACCATCCCCCCTCCGAATCCA ATCTGTCAAAGTCGTTATCGCTTTCTTCTACCATATATTATCTTCTCTCC CATTCCATTGTTGAGTCTGTCTGCTGCTCTTTTTCATCTTTCCTGTTCTC ATCGTCAACCACCACGACCTCAATCATCTCCTGCTTCTACTTTGCTACTA CCCCTCCTACCCCTCCTCCTGCTCCTCTGCTCTTGTTCCTGCTGACTCAA TATCTTCCCTGTGTATGCTTAACTGGCAATCAGGCAGCATGATTGACGCA TAGTTGTGGGGAATGTGGAAGTCGTGGTCGAGGGATGGGCTAGGAGGCTC TTGCGAGGGTCGCCAGGCGGACGGTACAGATTGAGGCAGGAGACATAGGT CCCCCCAAGTTTAGTCCCGCAATTTTAGACCAGTGACAGATCACAACCAG AATATTACTGTTCGCTGCTAGGGAGTAAAACTCCCTTGTGGTCTAGCCAG ACCGTATGTTCGTGGCAGCGAATGCTCTTTCCGATCCCGCGAGATCTCGA GAGAGGAAAGGGCTTGCGGGGGTTGAGAAAGAGATGTCCATGGCAAAAGC GCCTAATGTTCGTCCGTACTCCAAGATTCCCACCCAACTTGCCCTTCTCT GCCCAAATGTATTTCTTGCGTAGCTTCTGGATAGGCCGACTTTTCGTGGT CTACGGGATCCTCCTCCTCTTAATTGTGCACGATCTTGTTGAGGCGCAAG GTTTGACCCCCCGGCGACCTACCTCCTGGCGGGAACTCATCGTTTTGGTT GGCTTCACCAGCTCGCCTTTTGATGCTTTCGGTGGTGTGGCAAGCTCTGC GGGTGGAAAAATCGACACAACGTACTTTGGCTTGTGCTTGTGGAAGTCCA AGCCAGGAAGATGCCCTCAGAGGCTCGACAGCCACTGTGCCGCCGTTTAA CTTGTTCGCCACATACGCGTGCTAAGCTACAGGCGGGTCTCGAGGAGGAT GCGTGACTGGGCTACTTATGACTCATTAGCACGTCTATCTTTATGTAGTC AACCATAACGCACACGCCTCACACAGCGCAGGCAAGAAAGTCGACATCCA ACCTCCTTCCCACCACGCGTCGAGCAGCACGCCCGCTACATGCTGTCCCG CCTTCGCAACTGCACAAGAAGAGGACACCGGTCGGTTCCTGGGCTGCTTC TTCTCTACTTTAGCGTCGTCCTCATGGTGATGAGTCGCTTGCCAGGAGCG GGGGGCTTTCTTTTGGCGTCCTGTTCTTCTTCCCGGGCAAGTCTGTTGTC GGACGCGCATCGAGCGAATGTGGGGTCGGCCGTCACGACCATACTGTCGT GGTATGTTCCTAGATCAGGAAACCGAATCCTGACGTCGAGCACGGCGGGA AGCGATGACAGGAAAGCAGAGGGAGACGAAGCTACCTCCGACTCGATCCT CACCACCCCGCAGCCACGACCATCGTCAACATTACCAGCAAGCCAAACAC CAAAAACTGCAATAGGCATTCCCACTGGAAAGACGACAGGTGCCACCACG GCAGCTGCTGCTGCGGCCGTGACCAAGAATAAACCACAACCGGCAAAATT GTCTCAGAGCAAGAATCTGCTCATCGTGGGGCTCGGCAACCCTGGTAAAG ATTATACCATGACCCGACACAACGCCGGCTTCCTAGTCATTGACGAATTG GCCAAGCGGATGGGCGTGAATTTCAAACTTCGCAGCGCCTTTCAGGGGGA ATATGGTTCGACCACATATCAGGGAAAGTCAATTGGTCTGCTCAAGCCCA CCACCTATATGAACAACAGCGGCCAGTCTGTGCGCAAGGTATGTGGGTAC AAAGGAGGCATTCATTCGTGGGGTGAAATGGATTTTTCATGTCTTTGTCT TTATTTTCCGTGTTTCCCTTTTTTCGCGCCGCAACAGGTGCTGGACTACT TCAAGCTGCCCCTGTCGTCGGTGCTAGTAGTGGTGGACGAGGTGGCCTTG GAGATGGGGCAGATTCGCCTCCGCCAGACAGGGTCGGCGGGGGGGCACAA CGGCCTCAAAAGTATCGAGGGGCACCTCAAATCGAAAGATTATAATCGTT TGCGGATCGGTGTGGGGGGAGGTGGGTGTGGGTGGGTTGTCCGGAAAAGG GGAAGAGGAAGAGGTAGAGAGGAGGTTACCTGCTAGACGCCTGGCTTTTG ATTAGATGCTCAAATTCGACACATTTGAATACAACTCAGGCCTTAGTATG GCTCGCAATATAGGATTTAAAACGAAAGCAACTCAGCTCAATTCTATCAC CTCTCACCCTTTCGTATTCACTTGTACACTCAGCGGCGCCGGGCCGAATG GTGGACCATGTCCTAGGCGAATTTAGTCGGTCGGAACGCAAGCTTTTGGA CGACTTGCTGATGAACGCGGTGGAGGCCGTGGAGGACTGGATTGAAGACG ACAATACCAACAATGTTATGACACGTGTCAATGCACCGCGATGAAAAAAA TATTAAAAACAAAATACAGGCAAACAACCCTCTCAATCATTACAGGCAGT AAAACAAATGCCGGCTCAGCATGTGCCATGTACATACATACAAAAGCAAC TCTTAAGGAAGAAGAAAGAAGAATTGAACTACTAAAATTTGCA back to topprotein sequence of NO17G01720.4 >NO17G01720.4-protein ID=NO17G01720.4-protein|Name=NO17G01720.4|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp MLSRLRNCTRRGHRSVPGLLLLYFSVVLMVMSRLPGAGGFLLASCSSSRA SLLSDAHRANVGSAVTTILSWYVPRSGNRILTSSTAGSDDRKAEGDEATS DSILTTPQPRPSSTLPASQTPKTAIGIPTGKTTGATTAAAAAAVTKNKPQ PAKLSQSKNLLIVGLGNPGKDYTMTRHNAGFLVIDELAKRMGVNFKLRSA FQGEYGSTTYQGKSIGLLKPTTYMNNSGQSVRKVCGYKGGIHSWGEMDFS CLCLYFPCFPFFAPQQVLDYFKLPLSSVLVVVDEVALEMGQIRLRQTGSA GGHNGLKSIEGHLKSKDYNRLRIGVGGGGCGWVVRKRGRGRGREEVTC* back to topmRNA from alignment at chr17:497855..500998+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G01720.4 ID=NO17G01720.4|Name=NO17G01720.4|organism=Nannochloropsis oceanica|type=mRNA|length=3144bp|location=Sequence derived from alignment at chr17:497855..500998+ (Nannochloropsis oceanica) TCCATGAATCTATTCTCTATTTTCGTCTTTGGCTGCCCTATCTTTTTCTT
TTCGTGTACACACGCATTGCTGTCCCACTCATGCCTCTGTCAATGGAATC
GCCGCCTCCTAACGATAGCTCTGAAACGCGACTGTTGCTATTGCTAGTTT
TTTAGGACGCGCATACCTATGCGTCTGTATCTCTCTCAGGATGAAAGGAT
AACAAACTGTACATATGTATGTAAGTATATATATATTAGTACGGTACTTA
GCGTATTGGGCGCAGCGGTGCGGGTGGATGAGGAAAGGGCTGCTAGCACC
CGCCGATCACAGTTCCTCTTACTCCATCCACCATCCCCCCTCCGAATCCA
ATCTGTCAAAGTCGTTATCGCTTTCTTCTACCATATATTATCTTCTCTCC
CATTCCATTGTTGAGTCTGTCTGCTGCTCTTTTTCATCTTTCCTGTTCTC
ATCGTCAACCACCACGACCTCAATCATCTCCTGCTTCTACTTTGCTACTA
CCCCTCCTACCCCTCCTCCTGCTCCTCTGCTCTTGTTCCTGCTGACTCAA
TATCTTCCCTGTGTATGCTTAACTGGCAATCAGGCAGCATGATTGACGCA
TAGTTGTGGGGAATGTGGAAGTCGTGGTCGAGGGATGGGCTAGGAGGCTC
TTGCGAGGGTCGCCAGGCGGACGGTACAGATTGAGGCAGGAGACATAGGT
CCCCCCAAGTTTAGTCCCGCAATTTTAGACCAGTGACAGATCACAACCAG
AATATTACTGTTCGCTGCTAGGGAGTAAAACTCCCTTGTGGTCTAGCCAG
ACCGTATGTTCGTGGCAGCGAATGCTCTTTCCGATCCCGCGAGATCTCGA
GAGAGGAAAGGGCTTGCGGGGGTTGAGAAAGAGATGTCCATGGCAAAAGC
GCCTAATGTTCGTCCGTACTCCAAGATTCCCACCCAACTTGCCCTTCTCT
GCCCAAATGTATTTCTTGCGTAGCTTCTGGATAGGCCGACTTTTCGTGGT
CTACGGGATCCTCCTCCTCTTAATTGTGCACGATCTTGTTGAGGCGCAAG
GTTTGACCCCCCGGCGACCTACCTCCTGGCGGGAACTCATCGTTTTGGTT
GGCTTCACCAGCTCGCCTTTTGATGCTTTCGGTGGTGTGGCAAGCTCTGC
GGGTGGAAAAATCGACACAACGTACTTTGGCTTGTGCTTGTGGAAGTCCA
AGCCAGGAAGATGCCCTCAGAGGCTCGACAGCCACTGTGCCGCCGTTTAA
CTTGTTCGCCACATACGCGTGCTAAGCTACAGGCGGGTCTCGAGGAGGAT
GCGTGACTGGGCTACTTATGACTCATTAGCACGTCTATCTTTATGTAGTC
AACCATAACGCACACGCCTCACACAGCGCAGGCAAGAAAGTCGACATCCA
ACCTCCTTCCCACCACGCGTCGAGCAGCACGCCCGCTACATGCTGTCCCG
CCTTCGCAACTGCACAAGAAGAGGACACCGGTCGGTTCCTGGGCTGCTTC
TTCTCTACTTTAGCGTCGTCCTCATGGTGATGAGTCGCTTGCCAGGAGCG
GGGGGCTTTCTTTTGGCGTCCTGTTCTTCTTCCCGGGCAAGTCTGTTGTC
GGACGCGCATCGAGCGAATGTGGGGTCGGCCGTCACGACCATACTGTCGT
GGTATGTTCCTAGGTACGTGCAAACATGCATCAAAGGGGTCATGAAAGGT
TGACCATGGCAAGCGAAGGAGTTTTCAGCTTGGAGAAAGCAACAGAGCGT
ACTTGCTGGCACAGACGCGTGCAACCTCTCGCCGGCAACCCTTGAGATCG
ACAAAATTTTCAATCAGGCAGATATTTATTCAGGCATTCATACATCCATG
TTTATTCATCACAGATCAGGAAACCGAATCCTGACGTCGAGCACGGCGGG
AAGCGATGACAGGAAAGCAGAGGGAGACGAAGCTACCTCCGACTCGATCC
TCACCACCCCGCAGCCACGACCATCGTCAACATTACCAGCAAGCCAAACA
CCAAAAACTGCAATAGGCATTCCCACTGGAAAGACGACAGGTGCCACCAC
GGCAGCTGCTGCTGCGGCCGTGACCAAGAATAAACCACAACCGGCAAAAT
TGTCTCAGAGCAAGAATCTGCTCATCGTGGGGCTCGGCAACCCTGGTAAA
GATTATACCATGACCCGACACAACGCCGGCTTCCTAGTCATTGACGAATT
GGCCAAGCGGATGGGCGTGAATTTCAAACTTCGCAGCGCCTTTCAGGGGG
AATATGGTTCGACCACATATCAGGGAAAGTCAATTGGTCTGCTCAAGCCC
ACCACCTATATGAACAACAGCGGCCAGTCTGTGCGCAAGGTATGTGGGTA
CAAAGGAGGCATTCATTCGTGGGGTGAAATGGATTTTTCATGTCTTTGTC
TTTATTTTCCGTGTTTCCCTTTTTTCGCGCCGCAACAGGTGCTGGACTAC
TTCAAGCTGCCCCTGTCGTCGGTGCTAGTAGTGGTGGACGAGGTGGCCTT
GGAGATGGGGCAGATTCGCCTCCGCCAGACAGGGTCGGCGGGGGGGCACA
ACGGCCTCAAAAGTATCGAGGGGCACCTCAAATCGAAAGATTATAATCGT
TTGCGGATCGGTGTGGGGGGAGGTGGGTGTGGGTGGGTTGTCCGGAAAAG
GGGAAGAGGAAGAGGTAGAGAGGAGGTTACCTGCTAGACGCCTGGCTTTT
GATTAGATGCTCAAATTCGACACATTTGAATACAACTCAGGCCTTAGTAT
GGCTCGCAATATAGGATTTAAAACGAAAGCAACTCAGCTCAATTCTATCA
CCTCTCACCCTTTCGTATTCACTTGTACACTCAGCGGCGCCGGGCCGAAT
GGTGGACCATGTCCTAGGCGAATTTAGTCGGTCGGAACGCAAGCTTTTGG
ACGACTTGCTGATGAACGCGGTGGAGGCCGTGGAGGACTGGATTGAAGAC
GACAATACCAACAATGTTATGACACGTGTCAATGCACCGCGATGAAAAAA
ATATTAAAAACAAAATACAGGCAAACAACCCTCTCAATCATTACAGGCAG
TAAAACAAATGCCGGCTCAGCATGTGCCATGTACATACATACAAAAGCAA
CTCTTAAGGAAGAAGAAAGAAGAATTGAACTACTAAAATTTGCA back to topCoding sequence (CDS) from alignment at chr17:497855..500998+ >NO17G01720.4 ID=NO17G01720.4|Name=NO17G01720.4|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at chr17:497855..500998+ (Nannochloropsis oceanica) ATGCTGTCCCGCCTTCGCAACTGCACAAGAAGAGGACACCGGTCGGTTCC TGGGCTGCTTCTTCTCTACTTTAGCGTCGTCCTCATGGTGATGAGTCGCT TGCCAGGAGCGGGGGGCTTTCTTTTGGCGTCCTGTTCTTCTTCCCGGGCA AGTCTGTTGTCGGACGCGCATCGAGCGAATGTGGGGTCGGCCGTCACGAC CATACTGTCGTGGTATGTTCCTAGATCAGGAAACCGAATCCTGACGTCGA GCACGGCGGGAAGCGATGACAGGAAAGCAGAGGGAGACGAAGCTACCTCC GACTCGATCCTCACCACCCCGCAGCCACGACCATCGTCAACATTACCAGC AAGCCAAACACCAAAAACTGCAATAGGCATTCCCACTGGAAAGACGACAG GTGCCACCACGGCAGCTGCTGCTGCGGCCGTGACCAAGAATAAACCACAA CCGGCAAAATTGTCTCAGAGCAAGAATCTGCTCATCGTGGGGCTCGGCAA CCCTGGTAAAGATTATACCATGACCCGACACAACGCCGGCTTCCTAGTCA TTGACGAATTGGCCAAGCGGATGGGCGTGAATTTCAAACTTCGCAGCGCC TTTCAGGGGGAATATGGTTCGACCACATATCAGGGAAAGTCAATTGGTCT GCTCAAGCCCACCACCTATATGAACAACAGCGGCCAGTCTGTGCGCAAGG TATGTGGGTACAAAGGAGGCATTCATTCGTGGGGTGAAATGGATTTTTCA TGTCTTTGTCTTTATTTTCCGTGTTTCCCTTTTTTCGCGCCGCAACAGGT GCTGGACTACTTCAAGCTGCCCCTGTCGTCGGTGCTAGTAGTGGTGGACG AGGTGGCCTTGGAGATGGGGCAGATTCGCCTCCGCCAGACAGGGTCGGCG GGGGGGCACAACGGCCTCAAAAGTATCGAGGGGCACCTCAAATCGAAAGA TTATAATCGTTTGCGGATCGGTGTGGGGGGAGGTGGGTGTGGGTGGGTTG TCCGGAAAAGGGGAAGAGGAAGAGGTAGAGAGGAGGTTACCTGCTAG back to top
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