NO17G01610, NO17G01610 (gene) Nannochloropsis oceanica

Overview
NameNO17G01610
Unique NameNO17G01610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2474
Alignment locationchr17:474126..476599 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:474126..476599 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0035556intracellular signal transduction
GO:0035556intracellular signal transduction
Vocabulary: INTERPRO
TermDefinition
IPR037191VPS9_dom_sf
IPR002219PE/DAG-bd
IPR003123VPS9
Homology
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BLAST of NO17G01610 vs. NCBI_GenBank
Match: EWM24260.1 (hypothetical protein Naga_100020g42 [Nannochloropsis gaditana])

HSP 1 Score: 491.9 bits (1265), Expect = 3.100e-135
Identity = 313/643 (48.68%), Postives = 385/643 (59.88%), Query Frame = 0 
Query:   33 AEKRAEEEVLLALRMMCQSGLRHPLHGHSYSRYTALRPRVCSSCEAPVFGPFSKACLCLTCGIIVHRQCVQRITRMPCGSFRGLHDPEGLNSCFAIPGGKVALKIRSNAKASVAGPEVVARSERKID----TDALLGGQIAEAEEEEVALNTGVR------------VLDSIPGNGNLEEIGIPGNPGAADAASSPSVSSSPSDDYSGSLTLTTGSGARRMTYDALARIGALVGSMVGVGGDASVGDGKEAAVIASGSSSV-TSRSIFSLSALRGAGAVADAYTGYRQQDSDRRHGSIGGSHERAARTSPVAMAWSRLAQRASRPEGXXXXXXXXXALLDLATFTRTLEEKKVNNDESIGPRRRSVEPRWDDSSAPFIGQILRSSRTPPGFVWAACLDSFVARHAASAGAG-------RALSPDIIKTNEEEEGEDRKETRVDEEGGVPAGSCCEDAASIIHEVALVLMEYVPGLLGSSLEAYEEAFEAVETEIMTTLYPSVLWECQNQVRALSRAVEAWYRQQPAEQEEEEKGLERGGVVSADAHYHKAAQELIRMSREVTGRKKVQRVLGACLALGEGNLVMTADELLPALGRVVRLARVPALPAHLAFIEETCDTGTLLGAEGYALTSLQVVISLIITPP 652
            AE+RAEEEVLLALRMMCQSGLRHPLHGHSY+RY ALRPRVC SCEAPVFGPFS AC CL CGIIVHRQCV RIT++PCG++RGLHDP GL S  A P   V +     A       E     E+K D    + +   G+  E  EE+ A     +            + D   G     EIG    PG     SS SV +           +   +GAR +TYDAL ++G L+G+M+G       GD  E    A+ +S +  S      S  +GA    +   G ++   +R   ++ GS + A    PVAMAWS LAQR  R            A L+L     T E  +  + + +  R+R          +  I QILR   TPPG +WAACLD FVARHAA+A AG        + S D  ++  E EG D          GV  GSC +DAA+II EV+L LMEYVPGLLG S+EA E+AF AVETEIMTTLYPSVL ECQ Q R+ S A+E WY ++P     EE+G++  G  + D  +H+A QEL+ MS+EVTGRKKV RVL +CLALGEG +V +AD+LLPAL  VVR AR+PALPAHLAFI++TCDTG LLGAEGYALTSLQVV+SLI+TPP
Sbjct:   36 AEERAEEEVLLALRMMCQSGLRHPLHGHSYARYRALRPRVCFSCEAPVFGPFSVACHCLLCGIIVHRQCVMRITKVPCGNYRGLHDPSGLLSSIATPREYVHM-----ASTETGPHETAVADEKKADKRESSVSQTHGRAEEPTEEKQARRERFQKDQSTARDGRSVIEDKEEGRAERIEIGDGPEPGVGRGTSS-SVETG---------LVKVNAGARGITYDALVQVGKLMGNMIG-------GDANEVGARAAVASLLKISTPEGGSSGGKGASCQEEDGAGGQRYWGERWSKTLSGSVDMAVPPPPVAMAWSHLAQRWKRSVSCREPPMSLAAFLELGNEENTKERCQGPHGKGMVERKR---------VSCLIEQILRCPETPPGGLWAACLDQFVARHAATAPAGSDGFRGCNSSSVDASRSGREWEGADM------PVAGVATGSCSQDAAAIIQEVSLTLMEYVPGLLGPSMEACEDAFVAVETEIMTTLYPSVLGECQEQARSRSSALEGWYLREP--DAREERGMDGAGAQNEDP-FHRAVQELVGMSQEVTGRKKVARVLQSCLALGEGRVVTSADDLLPALAGVVRSARIPALPAHLAFIDQTCDTGALLGAEGYALTSLQVVVSLIVTPP 638
The following BLAST results are available for this feature:
BLAST of NO17G01610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24260.13.100e-13548.68hypothetical protein Naga_100020g42 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002945NSK002945Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01610.1NO17G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632459gene_7728Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g42gene6219Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01610.1NO17G01610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01610 ID=NO17G01610|Name=NO17G01610|organism=Nannochloropsis oceanica|type=gene|length=2474bp
ACAGACACTAAATCATAGCATCTTGTCCATGCATCGCTCAGGAAGTGCGA
GGCAGGGCACCTAGGTGAGCATGCCTTCACGAGAATGCCACGACGGACGA
GGCGTCATCATCACCTGGCCTGACAAGCACTGAGAGAATACAACTAAGAC
CCCACTCGCCATGTGGCTGCGGGGTGAGGATGCCCCCGCGTGGCGACAGT
CTCCAACAGGCCTTCCTGCTATCTCAAGCGTCGTTCCAGTCCCTGTGAGT
GAGGGCGCGGAAAAGAGGGCGGAAGAAGAGGTCTTGCTGGCGCTTCGTAT
GATGTGCCAATCCGGCTTACGGCACCCGCTTCACGGACATTCCTACTCGC
GCTATACAGCGCTACGGCCACGCGTGTGCTCTTCGTGCGAGGCACCCGTG
TTTGGACCCTTCTCCAAGGCCTGCCTTTGTTTGACATGCGGTATCATCGT
GCACCGGCAGTGCGTCCAACGCATCACCCGAATGCCCTGCGGCAGCTTCC
GCGGCCTTCACGACCCCGAGGGCCTCAACAGCTGCTTTGCCATCCCTGGG
GGAAAAGTGGCTCTGAAAATAAGGAGTAATGCTAAGGCGAGTGTGGCTGG
ACCAGAAGTGGTGGCAAGATCAGAAAGGAAGATAGACACGGACGCACTAC
TAGGAGGCCAAATAGCAGAGGCGGAGGAAGAAGAGGTCGCGCTGAACACC
GGAGTGCGGGTTTTGGACAGCATCCCAGGAAATGGAAACTTGGAAGAGAT
AGGCATCCCGGGAAATCCTGGTGCTGCTGATGCAGCATCGTCTCCTTCAG
TGAGCAGCAGTCCCAGCGACGACTATAGCGGTAGTCTTACTCTTACTACC
GGCAGTGGCGCCCGCCGCATGACATACGACGCGCTCGCACGGATTGGAGC
TCTGGTGGGCAGTATGGTGGGTGTTGGTGGAGATGCTAGCGTTGGGGATG
GAAAAGAAGCCGCAGTGATAGCCAGCGGCAGCAGCAGTGTTACCAGCAGA
AGCATTTTTAGCTTGTCGGCGCTTCGCGGAGCGGGAGCTGTGGCTGATGC
TTACACAGGGTACCGACAGCAAGATAGTGACCGACGGCATGGCAGTATCG
GTGGCAGTCACGAGAGAGCGGCCCGAACGTCGCCAGTGGCTATGGCTTGG
TCTCGTCTAGCACAGCGAGCAAGCCGGCCCGAGGGAGGAGGAGGTGGGGA
GGGAGGGGCAGGTGCCTTGTTAGACCTGGCTACGTTTACTCGCACCCTAG
AGGAGAAGAAAGTAAACAACGACGAATCCATAGGCCCCAGGAGAAGGTCA
GTCGAACCAAGGTGGGACGATTCAAGCGCCCCTTTCATTGGACAGATTTT
GCGTTCTTCTCGGACGCCCCCAGGCTTTGTGTGGGCAGCCTGTTTGGATA
GTTTCGTGGCGCGGCATGCAGCTTCAGCGGGCGCTGGACGGGCTCTATCA
CCAGACATCATAAAGACAAACGAAGAGGAAGAGGGGGAGGACAGGAAGGA
AACGAGAGTGGACGAGGAGGGAGGAGTCCCCGCTGGGTCGTGCTGTGAAG
ACGCGGCGTCCATTATTCACGAGGTTGCGTTGGTGTTGATGGAATATGTG
CCAGGGCTGTTAGGCTCCTCGTTGGAAGCCTACGAAGAAGCATTTGAGGC
GGTAGAAACTGAAATTATGACGACGCTCTACCCATCTGTGCTTTGGGAGT
GCCAGAATCAGGTGCGGGCCTTGAGCCGCGCTGTCGAGGCTTGGTATCGC
CAGCAGCCTGCGGAGCAGGAGGAAGAGGAAAAAGGGTTGGAGCGAGGAGG
GGTTGTTAGTGCAGACGCACATTACCACAAGGCGGCTCAGGAGCTGATAA
GAATGAGTAGGGAGGTGACGGGTCGGAAGAAGGTGCAACGTGTTTTGGGG
GCCTGTTTGGCGTTGGGGGAAGGGAATTTGGTAATGACAGCAGATGAGCT
CTTGCCGGCCCTGGGCCGTGTCGTGCGATTGGCGCGGGTGCCTGCATTGC
CTGCTCATTTGGCATTTATTGAAGAGACTTGCGATACGGGGACTTTGTTG
GGCGCGGAAGGCTACGCGTTGACGTCTTTGCAGGTTGTGATTAGCCTTAT
CATAACGCCACCGGCTCATGACGACAAGGGGGCAGAGGAGGGGGGGGAAT
TTTGAGGAGGTACAGGGATAGGAGACGAGTTGAAAGTCTCACGACAAAAA
GTCGACGTGCATTGATGTCTCACCGTCTGAGAAATGATTGGGGGTGATGT
AGCTTGGGCATCCGCGTCTGCGTGTGTTGGAAGATGGTGGGTGGCCGGGG
GTGAGATGAAAGCCTGTAATAATGCATGTAAATAGCCTGATGTTGATTTA
AAAACAAATCTGTTGGCGGGAGAGATATGAAAAGAGAAGTCAAGAAGAAG
ACACTGCGATAAGAACATTTTGATCTTTGCTTGAGGAGTCAGCCACCCGC
GCACTAGGGTGTCCTATTTTCTAA
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protein sequence of NO17G01610.1

>NO17G01610.1-protein ID=NO17G01610.1-protein|Name=NO17G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MWLRGEDAPAWRQSPTGLPAISSVVPVPVSEGAEKRAEEEVLLALRMMCQ
SGLRHPLHGHSYSRYTALRPRVCSSCEAPVFGPFSKACLCLTCGIIVHRQ
CVQRITRMPCGSFRGLHDPEGLNSCFAIPGGKVALKIRSNAKASVAGPEV
VARSERKIDTDALLGGQIAEAEEEEVALNTGVRVLDSIPGNGNLEEIGIP
GNPGAADAASSPSVSSSPSDDYSGSLTLTTGSGARRMTYDALARIGALVG
SMVGVGGDASVGDGKEAAVIASGSSSVTSRSIFSLSALRGAGAVADAYTG
YRQQDSDRRHGSIGGSHERAARTSPVAMAWSRLAQRASRPEGGGGGEGGA
GALLDLATFTRTLEEKKVNNDESIGPRRRSVEPRWDDSSAPFIGQILRSS
RTPPGFVWAACLDSFVARHAASAGAGRALSPDIIKTNEEEEGEDRKETRV
DEEGGVPAGSCCEDAASIIHEVALVLMEYVPGLLGSSLEAYEEAFEAVET
EIMTTLYPSVLWECQNQVRALSRAVEAWYRQQPAEQEEEEKGLERGGVVS
ADAHYHKAAQELIRMSREVTGRKKVQRVLGACLALGEGNLVMTADELLPA
LGRVVRLARVPALPAHLAFIEETCDTGTLLGAEGYALTSLQVVISLIITP
PAHDDKGAEEGGEF*
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Synonyms
Publications