NO17G01610.1, NO17G01610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01610.1
Unique NameNO17G01610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2474
Alignment locationchr17:474126..476599 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:474126..476599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01610.1 vs.
Match: EWM24260.1 (hypothetical protein Naga_100020g42 [Nannochloropsis gaditana])

HSP 1 Score: 488.0 bits (1255), Expect = 4.500e-134
Identity = 313/643 (48.68%), Postives = 385/643 (59.88%), Query Frame = 0 
Query:   33 AEKRAEEEVLLALRMMCQSGLRHPLHGHSYSRYTALRPRVCSSCEAPVFGPFSKACLCLTCGIIVHRQCVQRITRMPCGSFRGLHDPEGLNSCFAIPGGKVALKIRSNAKASVAGPEVVARSERKID----TDALLGGQIAEAEEEEVALNTGVR------------VLDSIPGNGNLEEIGIPGNPGAADAASSPSVSSSPSDDYSGSLTLTTGSGARRMTYDALARIGALVGSMVGVGGDASVGDGKEAAVIASGSSSV-TSRSIFSLSALRGAGAVADAYTGYRQQDSDRRHGSIGGSHERAARTSPVAMAWSRLAQRASRPEGGGGGEGGAGALLDLATFTRTLEEKKVNNDESIGPRRRSVEPRWDDSSAPFIGQILRSSRTPPGFVWAACLDSFVARHAASAGAG-------RALSPDIIKTNEEEEGEDRKETRVDEEGGVPAGSCCEDAASIIHEVALVLMEYVPGLLGSSLEAYEEAFEAVETEIMTTLYPSVLWECQNQVRALSRAVEAWYRQQPAEQEEEEKGLERGGVVSADAHYHKAAQELIRMSREVTGRKKVQRVLGACLALGEGNLVMTADELLPALGRVVRLARVPALPAHLAFIEETCDTGTLLGAEGYALTSLQVVISLIITPP 652
            AE+RAEEEVLLALRMMCQSGLRHPLHGHSY+RY ALRPRVC SCEAPVFGPFS AC CL CGIIVHRQCV RIT++PCG++RGLHDP GL S  A P   V +     A       E     E+K D    + +   G+  E  EE+ A     +            + D   G     EIG    PG     SS SV +           +   +GAR +TYDAL ++G L+G+M+G       GD  E    A+ +S +  S      S  +GA    +   G ++   +R   ++ GS + A    PVAMAWS LAQR  R            A L+L     T E  +  + + +  R+R          +  I QILR   TPPG +WAACLD FVARHAA+A AG        + S D  ++  E EG D          GV  GSC +DAA+II EV+L LMEYVPGLLG S+EA E+AF AVETEIMTTLYPSVL ECQ Q R+ S A+E WY ++P     EE+G++  G  + D  +H+A QEL+ MS+EVTGRKKV RVL +CLALGEG +V +AD+LLPAL  VVR AR+PALPAHLAFI++TCDTG LLGAEGYALTSLQVV+SLI+TPP
Sbjct:   36 AEERAEEEVLLALRMMCQSGLRHPLHGHSYARYRALRPRVCFSCEAPVFGPFSVACHCLLCGIIVHRQCVMRITKVPCGNYRGLHDPSGLLSSIATPREYVHM-----ASTETGPHETAVADEKKADKRESSVSQTHGRAEEPTEEKQARRERFQKDQSTARDGRSVIEDKEEGRAERIEIGDGPEPGVGRGTSS-SVETG---------LVKVNAGARGITYDALVQVGKLMGNMIG-------GDANEVGARAAVASLLKISTPEGGSSGGKGASCQEEDGAGGQRYWGERWSKTLSGSVDMAVPPPPVAMAWSHLAQRWKRSVSCREPPMSLAAFLELGNEENTKERCQGPHGKGMVERKR---------VSCLIEQILRCPETPPGGLWAACLDQFVARHAATAPAGSDGFRGCNSSSVDASRSGREWEGADM------PVAGVATGSCSQDAAAIIQEVSLTLMEYVPGLLGPSMEACEDAFVAVETEIMTTLYPSVLGECQEQARSRSSALEGWYLREP--DAREERGMDGAGAQNEDP-FHRAVQELVGMSQEVTGRKKVARVLQSCLALGEGRVVTSADDLLPALAGVVRSARIPALPAHLAFIDQTCDTGALLGAEGYALTSLQVVVSLIVTPP 638
The following BLAST results are available for this feature:
BLAST of NO17G01610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24260.14.500e-13448.68hypothetical protein Naga_100020g42 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01610NO17G01610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01610.1NO17G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01610.1.cds1NO17G01610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01610.1 ID=NO17G01610.1|Name=NO17G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2474bp
ACAGACACTAAATCATAGCATCTTGTCCATGCATCGCTCAGGAAGTGCGA
GGCAGGGCACCTAGGTGAGCATGCCTTCACGAGAATGCCACGACGGACGA
GGCGTCATCATCACCTGGCCTGACAAGCACTGAGAGAATACAACTAAGAC
CCCACTCGCCATGTGGCTGCGGGGTGAGGATGCCCCCGCGTGGCGACAGT
CTCCAACAGGCCTTCCTGCTATCTCAAGCGTCGTTCCAGTCCCTGTGAGT
GAGGGCGCGGAAAAGAGGGCGGAAGAAGAGGTCTTGCTGGCGCTTCGTAT
GATGTGCCAATCCGGCTTACGGCACCCGCTTCACGGACATTCCTACTCGC
GCTATACAGCGCTACGGCCACGCGTGTGCTCTTCGTGCGAGGCACCCGTG
TTTGGACCCTTCTCCAAGGCCTGCCTTTGTTTGACATGCGGTATCATCGT
GCACCGGCAGTGCGTCCAACGCATCACCCGAATGCCCTGCGGCAGCTTCC
GCGGCCTTCACGACCCCGAGGGCCTCAACAGCTGCTTTGCCATCCCTGGG
GGAAAAGTGGCTCTGAAAATAAGGAGTAATGCTAAGGCGAGTGTGGCTGG
ACCAGAAGTGGTGGCAAGATCAGAAAGGAAGATAGACACGGACGCACTAC
TAGGAGGCCAAATAGCAGAGGCGGAGGAAGAAGAGGTCGCGCTGAACACC
GGAGTGCGGGTTTTGGACAGCATCCCAGGAAATGGAAACTTGGAAGAGAT
AGGCATCCCGGGAAATCCTGGTGCTGCTGATGCAGCATCGTCTCCTTCAG
TGAGCAGCAGTCCCAGCGACGACTATAGCGGTAGTCTTACTCTTACTACC
GGCAGTGGCGCCCGCCGCATGACATACGACGCGCTCGCACGGATTGGAGC
TCTGGTGGGCAGTATGGTGGGTGTTGGTGGAGATGCTAGCGTTGGGGATG
GAAAAGAAGCCGCAGTGATAGCCAGCGGCAGCAGCAGTGTTACCAGCAGA
AGCATTTTTAGCTTGTCGGCGCTTCGCGGAGCGGGAGCTGTGGCTGATGC
TTACACAGGGTACCGACAGCAAGATAGTGACCGACGGCATGGCAGTATCG
GTGGCAGTCACGAGAGAGCGGCCCGAACGTCGCCAGTGGCTATGGCTTGG
TCTCGTCTAGCACAGCGAGCAAGCCGGCCCGAGGGAGGAGGAGGTGGGGA
GGGAGGGGCAGGTGCCTTGTTAGACCTGGCTACGTTTACTCGCACCCTAG
AGGAGAAGAAAGTAAACAACGACGAATCCATAGGCCCCAGGAGAAGGTCA
GTCGAACCAAGGTGGGACGATTCAAGCGCCCCTTTCATTGGACAGATTTT
GCGTTCTTCTCGGACGCCCCCAGGCTTTGTGTGGGCAGCCTGTTTGGATA
GTTTCGTGGCGCGGCATGCAGCTTCAGCGGGCGCTGGACGGGCTCTATCA
CCAGACATCATAAAGACAAACGAAGAGGAAGAGGGGGAGGACAGGAAGGA
AACGAGAGTGGACGAGGAGGGAGGAGTCCCCGCTGGGTCGTGCTGTGAAG
ACGCGGCGTCCATTATTCACGAGGTTGCGTTGGTGTTGATGGAATATGTG
CCAGGGCTGTTAGGCTCCTCGTTGGAAGCCTACGAAGAAGCATTTGAGGC
GGTAGAAACTGAAATTATGACGACGCTCTACCCATCTGTGCTTTGGGAGT
GCCAGAATCAGGTGCGGGCCTTGAGCCGCGCTGTCGAGGCTTGGTATCGC
CAGCAGCCTGCGGAGCAGGAGGAAGAGGAAAAAGGGTTGGAGCGAGGAGG
GGTTGTTAGTGCAGACGCACATTACCACAAGGCGGCTCAGGAGCTGATAA
GAATGAGTAGGGAGGTGACGGGTCGGAAGAAGGTGCAACGTGTTTTGGGG
GCCTGTTTGGCGTTGGGGGAAGGGAATTTGGTAATGACAGCAGATGAGCT
CTTGCCGGCCCTGGGCCGTGTCGTGCGATTGGCGCGGGTGCCTGCATTGC
CTGCTCATTTGGCATTTATTGAAGAGACTTGCGATACGGGGACTTTGTTG
GGCGCGGAAGGCTACGCGTTGACGTCTTTGCAGGTTGTGATTAGCCTTAT
CATAACGCCACCGGCTCATGACGACAAGGGGGCAGAGGAGGGGGGGGAAT
TTTGAGGAGGTACAGGGATAGGAGACGAGTTGAAAGTCTCACGACAAAAA
GTCGACGTGCATTGATGTCTCACCGTCTGAGAAATGATTGGGGGTGATGT
AGCTTGGGCATCCGCGTCTGCGTGTGTTGGAAGATGGTGGGTGGCCGGGG
GTGAGATGAAAGCCTGTAATAATGCATGTAAATAGCCTGATGTTGATTTA
AAAACAAATCTGTTGGCGGGAGAGATATGAAAAGAGAAGTCAAGAAGAAG
ACACTGCGATAAGAACATTTTGATCTTTGCTTGAGGAGTCAGCCACCCGC
GCACTAGGGTGTCCTATTTTCTAA
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protein sequence of NO17G01610.1

>NO17G01610.1-protein ID=NO17G01610.1-protein|Name=NO17G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MWLRGEDAPAWRQSPTGLPAISSVVPVPVSEGAEKRAEEEVLLALRMMCQ
SGLRHPLHGHSYSRYTALRPRVCSSCEAPVFGPFSKACLCLTCGIIVHRQ
CVQRITRMPCGSFRGLHDPEGLNSCFAIPGGKVALKIRSNAKASVAGPEV
VARSERKIDTDALLGGQIAEAEEEEVALNTGVRVLDSIPGNGNLEEIGIP
GNPGAADAASSPSVSSSPSDDYSGSLTLTTGSGARRMTYDALARIGALVG
SMVGVGGDASVGDGKEAAVIASGSSSVTSRSIFSLSALRGAGAVADAYTG
YRQQDSDRRHGSIGGSHERAARTSPVAMAWSRLAQRASRPEGGGGGEGGA
GALLDLATFTRTLEEKKVNNDESIGPRRRSVEPRWDDSSAPFIGQILRSS
RTPPGFVWAACLDSFVARHAASAGAGRALSPDIIKTNEEEEGEDRKETRV
DEEGGVPAGSCCEDAASIIHEVALVLMEYVPGLLGSSLEAYEEAFEAVET
EIMTTLYPSVLWECQNQVRALSRAVEAWYRQQPAEQEEEEKGLERGGVVS
ADAHYHKAAQELIRMSREVTGRKKVQRVLGACLALGEGNLVMTADELLPA
LGRVVRLARVPALPAHLAFIEETCDTGTLLGAEGYALTSLQVVISLIITP
PAHDDKGAEEGGEF*
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mRNA from alignment at chr17:474126..476599-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01610.1 ID=NO17G01610.1|Name=NO17G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2474bp|location=Sequence derived from alignment at chr17:474126..476599- (Nannochloropsis oceanica)
ACAGACACTAAATCATAGCATCTTGTCCATGCATCGCTCAGGAAGTGCGA
GGCAGGGCACCTAGGTGAGCATGCCTTCACGAGAATGCCACGACGGACGA
GGCGTCATCATCACCTGGCCTGACAAGCACTGAGAGAATACAACTAAGAC
CCCACTCGCCATGTGGCTGCGGGGTGAGGATGCCCCCGCGTGGCGACAGT
CTCCAACAGGCCTTCCTGCTATCTCAAGCGTCGTTCCAGTCCCTGTGAGT
GAGGGCGCGGAAAAGAGGGCGGAAGAAGAGGTCTTGCTGGCGCTTCGTAT
GATGTGCCAATCCGGCTTACGGCACCCGCTTCACGGACATTCCTACTCGC
GCTATACAGCGCTACGGCCACGCGTGTGCTCTTCGTGCGAGGCACCCGTG
TTTGGACCCTTCTCCAAGGCCTGCCTTTGTTTGACATGCGGTATCATCGT
GCACCGGCAGTGCGTCCAACGCATCACCCGAATGCCCTGCGGCAGCTTCC
GCGGCCTTCACGACCCCGAGGGCCTCAACAGCTGCTTTGCCATCCCTGGG
GGAAAAGTGGCTCTGAAAATAAGGAGTAATGCTAAGGCGAGTGTGGCTGG
ACCAGAAGTGGTGGCAAGATCAGAAAGGAAGATAGACACGGACGCACTAC
TAGGAGGCCAAATAGCAGAGGCGGAGGAAGAAGAGGTCGCGCTGAACACC
GGAGTGCGGGTTTTGGACAGCATCCCAGGAAATGGAAACTTGGAAGAGAT
AGGCATCCCGGGAAATCCTGGTGCTGCTGATGCAGCATCGTCTCCTTCAG
TGAGCAGCAGTCCCAGCGACGACTATAGCGGTAGTCTTACTCTTACTACC
GGCAGTGGCGCCCGCCGCATGACATACGACGCGCTCGCACGGATTGGAGC
TCTGGTGGGCAGTATGGTGGGTGTTGGTGGAGATGCTAGCGTTGGGGATG
GAAAAGAAGCCGCAGTGATAGCCAGCGGCAGCAGCAGTGTTACCAGCAGA
AGCATTTTTAGCTTGTCGGCGCTTCGCGGAGCGGGAGCTGTGGCTGATGC
TTACACAGGGTACCGACAGCAAGATAGTGACCGACGGCATGGCAGTATCG
GTGGCAGTCACGAGAGAGCGGCCCGAACGTCGCCAGTGGCTATGGCTTGG
TCTCGTCTAGCACAGCGAGCAAGCCGGCCCGAGGGAGGAGGAGGTGGGGA
GGGAGGGGCAGGTGCCTTGTTAGACCTGGCTACGTTTACTCGCACCCTAG
AGGAGAAGAAAGTAAACAACGACGAATCCATAGGCCCCAGGAGAAGGTCA
GTCGAACCAAGGTGGGACGATTCAAGCGCCCCTTTCATTGGACAGATTTT
GCGTTCTTCTCGGACGCCCCCAGGCTTTGTGTGGGCAGCCTGTTTGGATA
GTTTCGTGGCGCGGCATGCAGCTTCAGCGGGCGCTGGACGGGCTCTATCA
CCAGACATCATAAAGACAAACGAAGAGGAAGAGGGGGAGGACAGGAAGGA
AACGAGAGTGGACGAGGAGGGAGGAGTCCCCGCTGGGTCGTGCTGTGAAG
ACGCGGCGTCCATTATTCACGAGGTTGCGTTGGTGTTGATGGAATATGTG
CCAGGGCTGTTAGGCTCCTCGTTGGAAGCCTACGAAGAAGCATTTGAGGC
GGTAGAAACTGAAATTATGACGACGCTCTACCCATCTGTGCTTTGGGAGT
GCCAGAATCAGGTGCGGGCCTTGAGCCGCGCTGTCGAGGCTTGGTATCGC
CAGCAGCCTGCGGAGCAGGAGGAAGAGGAAAAAGGGTTGGAGCGAGGAGG
GGTTGTTAGTGCAGACGCACATTACCACAAGGCGGCTCAGGAGCTGATAA
GAATGAGTAGGGAGGTGACGGGTCGGAAGAAGGTGCAACGTGTTTTGGGG
GCCTGTTTGGCGTTGGGGGAAGGGAATTTGGTAATGACAGCAGATGAGCT
CTTGCCGGCCCTGGGCCGTGTCGTGCGATTGGCGCGGGTGCCTGCATTGC
CTGCTCATTTGGCATTTATTGAAGAGACTTGCGATACGGGGACTTTGTTG
GGCGCGGAAGGCTACGCGTTGACGTCTTTGCAGGTTGTGATTAGCCTTAT
CATAACGCCACCGGCTCATGACGACAAGGGGGCAGAGGAGGGGGGGGAAT
TTTGAGGAGGTACAGGGATAGGAGACGAGTTGAAAGTCTCACGACAAAAA
GTCGACGTGCATTGATGTCTCACCGTCTGAGAAATGATTGGGGGTGATGT
AGCTTGGGCATCCGCGTCTGCGTGTGTTGGAAGATGGTGGGTGGCCGGGG
GTGAGATGAAAGCCTGTAATAATGCATGTAAATAGCCTGATGTTGATTTA
AAAACAAATCTGTTGGCGGGAGAGATATGAAAAGAGAAGTCAAGAAGAAG
ACACTGCGATAAGAACATTTTGATCTTTGCTTGAGGAGTCAGCCACCCGC
GCACTAGGGTGTCCTATTTTCTAA
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Coding sequence (CDS) from alignment at chr17:474126..476599-

>NO17G01610.1 ID=NO17G01610.1|Name=NO17G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=1995bp|location=Sequence derived from alignment at chr17:474126..476599- (Nannochloropsis oceanica)
ATGTGGCTGCGGGGTGAGGATGCCCCCGCGTGGCGACAGTCTCCAACAGG
CCTTCCTGCTATCTCAAGCGTCGTTCCAGTCCCTGTGAGTGAGGGCGCGG
AAAAGAGGGCGGAAGAAGAGGTCTTGCTGGCGCTTCGTATGATGTGCCAA
TCCGGCTTACGGCACCCGCTTCACGGACATTCCTACTCGCGCTATACAGC
GCTACGGCCACGCGTGTGCTCTTCGTGCGAGGCACCCGTGTTTGGACCCT
TCTCCAAGGCCTGCCTTTGTTTGACATGCGGTATCATCGTGCACCGGCAG
TGCGTCCAACGCATCACCCGAATGCCCTGCGGCAGCTTCCGCGGCCTTCA
CGACCCCGAGGGCCTCAACAGCTGCTTTGCCATCCCTGGGGGAAAAGTGG
CTCTGAAAATAAGGAGTAATGCTAAGGCGAGTGTGGCTGGACCAGAAGTG
GTGGCAAGATCAGAAAGGAAGATAGACACGGACGCACTACTAGGAGGCCA
AATAGCAGAGGCGGAGGAAGAAGAGGTCGCGCTGAACACCGGAGTGCGGG
TTTTGGACAGCATCCCAGGAAATGGAAACTTGGAAGAGATAGGCATCCCG
GGAAATCCTGGTGCTGCTGATGCAGCATCGTCTCCTTCAGTGAGCAGCAG
TCCCAGCGACGACTATAGCGGTAGTCTTACTCTTACTACCGGCAGTGGCG
CCCGCCGCATGACATACGACGCGCTCGCACGGATTGGAGCTCTGGTGGGC
AGTATGGTGGGTGTTGGTGGAGATGCTAGCGTTGGGGATGGAAAAGAAGC
CGCAGTGATAGCCAGCGGCAGCAGCAGTGTTACCAGCAGAAGCATTTTTA
GCTTGTCGGCGCTTCGCGGAGCGGGAGCTGTGGCTGATGCTTACACAGGG
TACCGACAGCAAGATAGTGACCGACGGCATGGCAGTATCGGTGGCAGTCA
CGAGAGAGCGGCCCGAACGTCGCCAGTGGCTATGGCTTGGTCTCGTCTAG
CACAGCGAGCAAGCCGGCCCGAGGGAGGAGGAGGTGGGGAGGGAGGGGCA
GGTGCCTTGTTAGACCTGGCTACGTTTACTCGCACCCTAGAGGAGAAGAA
AGTAAACAACGACGAATCCATAGGCCCCAGGAGAAGGTCAGTCGAACCAA
GGTGGGACGATTCAAGCGCCCCTTTCATTGGACAGATTTTGCGTTCTTCT
CGGACGCCCCCAGGCTTTGTGTGGGCAGCCTGTTTGGATAGTTTCGTGGC
GCGGCATGCAGCTTCAGCGGGCGCTGGACGGGCTCTATCACCAGACATCA
TAAAGACAAACGAAGAGGAAGAGGGGGAGGACAGGAAGGAAACGAGAGTG
GACGAGGAGGGAGGAGTCCCCGCTGGGTCGTGCTGTGAAGACGCGGCGTC
CATTATTCACGAGGTTGCGTTGGTGTTGATGGAATATGTGCCAGGGCTGT
TAGGCTCCTCGTTGGAAGCCTACGAAGAAGCATTTGAGGCGGTAGAAACT
GAAATTATGACGACGCTCTACCCATCTGTGCTTTGGGAGTGCCAGAATCA
GGTGCGGGCCTTGAGCCGCGCTGTCGAGGCTTGGTATCGCCAGCAGCCTG
CGGAGCAGGAGGAAGAGGAAAAAGGGTTGGAGCGAGGAGGGGTTGTTAGT
GCAGACGCACATTACCACAAGGCGGCTCAGGAGCTGATAAGAATGAGTAG
GGAGGTGACGGGTCGGAAGAAGGTGCAACGTGTTTTGGGGGCCTGTTTGG
CGTTGGGGGAAGGGAATTTGGTAATGACAGCAGATGAGCTCTTGCCGGCC
CTGGGCCGTGTCGTGCGATTGGCGCGGGTGCCTGCATTGCCTGCTCATTT
GGCATTTATTGAAGAGACTTGCGATACGGGGACTTTGTTGGGCGCGGAAG
GCTACGCGTTGACGTCTTTGCAGGTTGTGATTAGCCTTATCATAACGCCA
CCGGCTCATGACGACAAGGGGGCAGAGGAGGGGGGGGAATTTTGA
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Synonyms
Publications