NO17G01510, NO17G01510 (gene) Nannochloropsis oceanica

Overview
NameNO17G01510
Unique NameNO17G01510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1764
Alignment locationchr17:448544..450307 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:448544..450307 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO17G01510 vs. NCBI_GenBank
Match: WP_106255866.1 (hypothetical protein [Leptolyngbya frigida] >PSB30693.1 hypothetical protein C7B82_08460 [Leptolyngbya frigida ULC18])

HSP 1 Score: 80.9 bits (198), Expect = 1.100e-11
Identity = 35/100 (35.00%), Postives = 65/100 (65.00%), Query Frame = 0
Query:   83 VSLRSLKDVSADSAFLEAQVIDWLDNEWIPQDCHKEVARLAAGAYIKARDDGIHDLGGVLLHVGTELEDMDMGDAFVDAWTVANKVSDLLLVRMGREVCC 183
            ++L   ++   +  +L A ++ WL+ E+IP+D + ++A+ AA  +++ R +G +DLG +++ + TE+E  D  ++F   +TVAN VSDLLL  +G + CC
Sbjct:    8 ITLPPARNPVQEGEWLRAALLQWLNQEFIPEDANWQIAKRAAQIFVRQRMEGENDLGSLVMAIVTEMESFDFSNSFFGEFTVANAVSDLLLDSLGIDRCC 107          
BLAST of NO17G01510 vs. NCBI_GenBank
Match: WP_015153567.1 (MULTISPECIES: hypothetical protein [Cyanobacteria] >AFY87019.1 hypothetical protein Chro_1495 [Chroococcidiopsis thermalis PCC 7203] >OWY67515.1 hypothetical protein B7486_31075 [cyanobacterium TDX16] >PSB45134.1 hypothetical protein C7B80_18090 [Cyanosarcina cf. burmensis CCALA 770] >PSB62880.1 hypothetical protein C7B79_16235 [Chroococcidiopsis cubana CCALA 043] >PSM47111.1 hypothetical protein C7Y66_21400 [Chroococcidiopsis sp. CCALA 051])

HSP 1 Score: 79.0 bits (193), Expect = 4.100e-11
Identity = 35/100 (35.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query:   83 VSLRSLKDVSADSAFLEAQVIDWLDNEWIPQDCHKEVARLAAGAYIKARDDGIHDLGGVLLHVGTELEDMDMGDAFVDAWTVANKVSDLLLVRMGREVCC 183
            V+L   KD   +  +L A +  WLD E++P+  +++++R AA  +++ R +G +DLG + + + TE+++ D   +F   + VAN VSDLLL  +G + CC
Sbjct:    8 VTLPPAKDPLQEGEWLRAALQQWLDTEFLPEPANQQISRRAAQIFVRQRMEGENDLGSLAIAIVTEMQEFDFSKSFYSEFAVANAVSDLLLDSLGIDRCC 107          
BLAST of NO17G01510 vs. NCBI_GenBank
Match: WP_041237108.1 (hypothetical protein [Cyanothece sp. PCC 7425])

HSP 1 Score: 79.0 bits (193), Expect = 4.100e-11
Identity = 34/100 (34.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query:   83 VSLRSLKDVSADSAFLEAQVIDWLDNEWIPQDCHKEVARLAAGAYIKARDDGIHDLGGVLLHVGTELEDMDMGDAFVDAWTVANKVSDLLLVRMGREVCC 183
            ++L   ++  +++ +L   +  WLD E+IP+  ++E+A+ A   Y++ R +G +DLG +++ + TELE  D   +F  ++ +AN VSDLLL  +G + CC
Sbjct:    8 ITLPPCRNPDSEAHWLRTTLQTWLDQEFIPESINQEIAQRATQVYLRQRLEGENDLGALVIALVTELEQFDFSRSFYSSFAIANAVSDLLLQSLGIDTCC 107          
BLAST of NO17G01510 vs. NCBI_GenBank
Match: WP_006633845.1 (hypothetical protein [Microcoleus vaginatus] >EGK86853.1 hypothetical protein MicvaDRAFT_3638 [Microcoleus vaginatus FGP-2])

HSP 1 Score: 78.6 bits (192), Expect = 5.300e-11
Identity = 33/100 (33.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query:   83 VSLRSLKDVSADSAFLEAQVIDWLDNEWIPQDCHKEVARLAAGAYIKARDDGIHDLGGVLLHVGTELEDMDMGDAFVDAWTVANKVSDLLLVRMGREVCC 183
            ++L   K+   +  +L+  ++ WLD+E+IP+  ++++A+ AA  Y++ R +G +DLG +++ + TE++  D   +F   + +AN VSDLLL  +G + CC
Sbjct:    8 ITLPPAKNPEQEGQWLQQTLLAWLDSEFIPEAANQQIAKRAAQIYVRQRMEGENDLGSLVIAIVTEMQAYDFSKSFYGEFAIANAVSDLLLESLGIDKCC 107          
BLAST of NO17G01510 vs. NCBI_GenBank
Match: ACL45635.1 (conserved hypothetical protein [Cyanothece sp. PCC 7425])

HSP 1 Score: 78.6 bits (192), Expect = 5.300e-11
Identity = 37/110 (33.64%), Postives = 68/110 (61.82%), Query Frame = 0
Query:   75 TDELSE--DGVSLRSLKDVSADSAFLEAQVIDWLDNEWIPQDCHKEVARLAAGAYIKARDDGIHDLGGVLLHVGTELEDMDMGDAFVDAWTVANKVSDLLLVRMGREVCC 183
            ++ LSE    ++L   ++  +++ +L   +  WLD E+IP+  ++E+A+ A   Y++ R +G +DLG +++ + TELE  D   +F  ++ +AN VSDLLL  +G + CC
Sbjct:    2 SESLSEPIPSITLPPCRNPDSEAHWLRTTLQTWLDQEFIPESINQEIAQRATQVYLRQRLEGENDLGALVIALVTELEQFDFSRSFYSSFAIANAVSDLLLQSLGIDTCC 111          
BLAST of NO17G01510 vs. NCBI_GenBank
Match: XP_003057357.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH59002.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 78.2 bits (191), Expect = 7.000e-11
Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = 0
Query:   93 ADSAFLEAQVIDWLDNEWIPQDCHKEVARLAAGAYIKARDDGIHDLGGVLLHVGTELEDMDMGDAFVDAWTVANKVSDLLLVRMGREVCC 183
            A+ A+L   +  WLD+EW  Q+ H+++   AA    + R +G  ++G +++ V  EL D D  D FV+A+ VANK S++L++R G EVCC
Sbjct:   11 AEIAWLAGMLKLWLDDEWSIQEPHRDLGMRAAEKCTEMRLEGCEEMGSLVMGVAQELIDFDFSDTFVNAFEVANKCSEILMMREGYEVCC 100          
BLAST of NO17G01510 vs. NCBI_GenBank
Match: WP_083619988.1 (hypothetical protein [Planktothrix serta] >CUR14330.1 conserved hypothetical protein [Planktothrix serta PCC 8927])

HSP 1 Score: 77.8 bits (190), Expect = 9.100e-11
Identity = 35/106 (33.02%), Postives = 65/106 (61.32%), Query Frame = 0
Query:   83 VSLRSLKDVSADSAFLEAQVIDWLDNEWIPQDCHKEVARLAAGAYIKARDDGIHDLGGVLLHVGTELEDMDMGDAFVDAWTVANKVSDLLLVRMGREVCCPEPEFT 189
            ++L   +++  +  +L+  +  WLD ++IP+  ++ +A+ AA  YI+ R +G +D+G +++ + TE+E  D   +F   + +AN VSDLLL  +G E CC   +FT
Sbjct:    8 ITLPPSQNLEQEGEWLKQTLHTWLDEQFIPEAVNETIAQRAAQIYIRQRLEGENDVGSLVIAIVTEMESFDFSKSFFGGFAIANAVSDLLLDSLGIERCCGREKFT 113          
BLAST of NO17G01510 vs. NCBI_GenBank
Match: WP_015175059.1 (hypothetical protein [Oscillatoria nigro-viridis] >AFZ05735.1 hypothetical protein Osc7112_1188 [Oscillatoria nigro-viridis PCC 7112])

HSP 1 Score: 77.4 bits (189), Expect = 1.200e-10
Identity = 32/100 (32.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query:   83 VSLRSLKDVSADSAFLEAQVIDWLDNEWIPQDCHKEVARLAAGAYIKARDDGIHDLGGVLLHVGTELEDMDMGDAFVDAWTVANKVSDLLLVRMGREVCC 183
            ++L   K+   +  +L+  ++ WLD+E+IP+  ++++A+ AA  Y++ R +G +D+G +++ + TE++  D   +F   + +AN VSDLLL  +G + CC
Sbjct:    8 ITLPPAKNPEQEGQWLQETLLAWLDSEFIPEAANQQIAKRAAQIYVRQRMEGENDVGSLVIAIVTEMQAYDFSKSFYGEFAIANAVSDLLLESLGIDKCC 107          
BLAST of NO17G01510 vs. NCBI_GenBank
Match: WP_006529944.1 (hypothetical protein [Gloeocapsa sp. PCC 73106] >ELR97255.1 hypothetical protein GLO73106DRAFT_00010610 [Gloeocapsa sp. PCC 73106])

HSP 1 Score: 76.6 bits (187), Expect = 2.000e-10
Identity = 32/100 (32.00%), Postives = 65/100 (65.00%), Query Frame = 0
Query:   83 VSLRSLKDVSADSAFLEAQVIDWLDNEWIPQDCHKEVARLAAGAYIKARDDGIHDLGGVLLHVGTELEDMDMGDAFVDAWTVANKVSDLLLVRMGREVCC 183
            ++L  L++V  +  +LE  +  WLD E+IP+  + ++A+ AA  +I+ R +G +DLG +++ + TE+++ +  ++F   + +AN +SDL+L  +G + CC
Sbjct:    9 ITLPPLRNVEQEKQWLEEALHHWLDQEFIPEAINFKIAQRAAQIFIRQRLEGENDLGSLVIAIITEMQNFNFRESFYSEFAIANAISDLILASLGVDCCC 108          
BLAST of NO17G01510 vs. NCBI_GenBank
Match: WP_079679805.1 (hypothetical protein [Planktothrix sp. PCC 11201] >SKB13485.1 conserved hypothetical protein [Planktothrix sp. PCC 11201])

HSP 1 Score: 76.6 bits (187), Expect = 2.000e-10
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 0
Query:   83 VSLRSLKDVSADSAFLEAQVIDWLDNEWIPQDCHKEVARLAAGAYIKARDDGIHDLGGVLLHVGTELEDMDMGDAFVDAWTVANKVSDLLLVRMGREVCCPEPEFTD 190
            ++L   +++  +  +L+  +  WLD ++IP+  ++ +A+ AA  Y++ R +G +D+G ++L + TE+E  D   +F   + +AN VSDLLL  +G E CC    F D
Sbjct:    8 ITLPPSENLQQEGEWLKQTLNRWLDEQFIPEVVNETIAQRAAQIYVRQRMEGENDVGSLVLAIVTEMESFDFSKSFFGEFVIANAVSDLLLDSLGIERCCGRSTFPD 114          
The following BLAST results are available for this feature:
BLAST of NO17G01510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_106255866.11.100e-1135.00hypothetical protein [Leptolyngbya frigida] >PSB30... [more]
WP_015153567.14.100e-1135.00MULTISPECIES: hypothetical protein [Cyanobacteria]... [more]
WP_041237108.14.100e-1134.00hypothetical protein [Cyanothece sp. PCC 7425][more]
WP_006633845.15.300e-1133.00hypothetical protein [Microcoleus vaginatus] >EGK8... [more]
ACL45635.15.300e-1133.64conserved hypothetical protein [Cyanothece sp. PCC... [more]
XP_003057357.17.000e-1140.00predicted protein [Micromonas pusilla CCMP1545] >E... [more]
WP_083619988.19.100e-1133.02hypothetical protein [Planktothrix serta] >CUR1433... [more]
WP_015175059.11.200e-1032.00hypothetical protein [Oscillatoria nigro-viridis] ... [more]
WP_006529944.12.000e-1032.00hypothetical protein [Gloeocapsa sp. PCC 73106] >E... [more]
WP_079679805.12.000e-1032.71hypothetical protein [Planktothrix sp. PCC 11201] ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002934NSK002934Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01510.1NO17G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599861gene_7738Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g52gene6209Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01510.1NO17G01510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01510 ID=NO17G01510|Name=NO17G01510|organism=Nannochloropsis oceanica|type=gene|length=1764bp
ACAGCTTTCTTGCGTCTCCTTCCGTTATGCTCATGCACGTGTGGAGGGGC
GGCATGCTGGTGGCCTGCTGCACGGTGTTGGCTTTCCTAGATCAAACGCA
CGCTTTCTTTCCCCTCTCTGCACTTTCTTCTTCGTCCTCTTCCGCAGCCG
CCCGTCGTCCAGgtacgcacgcattctatttgaagaggaagagctagggg
atgctaggatagagagtcgccgggcttggaggaccgcagtgcttggagtt
gggtgtgtgggggagaggaggtcaaattgtgttgcacctacaagcttcga
tgttctcgttcgatcccgtctcccggccttttgacttttagatagatatc
actgttatgctcagtggactggatggccactctcgtccgcgatgcacagt
ctcctcctttaatctagactttcccctcactttccccattcatactcagT
CCCGTCTGTGTCGGATAGCCACCCCAAGCCCACCTTCTCCTGCCGGCTCT
TCTCCTCTCCCTCTGTGGACTCGGAGGGAGAGACCACCGACGAGTTGTCT
GAGGATGGAGTGTCCCTTCGGTCGCTCAAAGACGTAAGCGCAGACTCTGC
GTTTCTGGAAGCGCAAGTCATCGACTGGTTAGATAACGAATGGATCCCTC
AAGATTGCCATAAGGAAGTTGCGCGCTTGGCAGCGGGAGCATATATCAAG
GCACGTGATGATGGCATACATGATTTGGGTGGTGTTTTGCTGCATGTTGG
GACGGAGTTGGAGGACATGGATATGGGGGATGCGTTCGTGGATGCCTGGA
CCGTGGCTAACAAGGTGTCGGACCTCTTGCTGGTGCGCATGGGTCGAGAG
GTATGTTGCCCCGAGCCGGAGTTCACGGATGAACAGCGTACGTTGATGAC
AGAGGGAAGGGGGGAGAGGGAGATTATGGCGTCGGGTCTGCGGCCAATTG
GGTCGTCGGGTGGGGCAAGTAGCGCTGATATTTTGATCGGTGGCGGTAAT
GGTGGTAGCTCCTTGCTGAAGGGCGGAGATGCACCGCAGCTTTTGAACCC
ACAGGCACCCCCGGCTTTTTTCACGCTGGAGGCTGTACATACTGCGGCCG
AGCATTACGTGGATGAATTCGCACGGTTTGATTTCATTCGCAAGTTTTTG
GATGGGCACGACGAGGCATGGACCGAGGCCAATCTAATCATGGCTATTAT
TTTAGGGTTTCGTTTCGACGAATGGGGAAATGTGGATTTGGAGGGGGTGA
ATGAGCGTTTTAGATCGTTGGCGTTCCCCCCTGACTTCCGGGGGAATGAG
GAGATGCGGGTAGCGCTGGACGCTATTTTGAGGGAGGACGAGGATGAGGA
TAAGATGAAGGGATTGGAGGAGTTTTTGGAGGTTATGGTGGGGAAGGCCT
ACTATCATCAAATGGATAAGGGGGATAACCCGGATTTTGCGTGTCGCTCA
ACGCTGATAAAGTGGATTTATGAGTATGATTTTGTGAATGAATGGCCTAA
TCTGCCCAGCGTGCAAGCGGTTTTGGGCGTTAAGGCCCGCATTGAGGCCA
AGCAGGAGGAGAAGTGTAAGCCGCCCACGCGTTTTCTCTACTAGATAAGC
GAGATTTTATGGTAATAGGAACGTAGGCCGCAGAAAATGAATTTTGGCGA
GTGGGAAGAGTGCGTGGTTGATGAGATGCTTTAGCCTGTAATTGTAAAAA
AATCGGAAAAAGAGGGGGAAAGAATGAGAAATACAGAAGGCAAGTATCTC
CAATGAAGGTGCGA
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protein sequence of NO17G01510.1

>NO17G01510.1-protein ID=NO17G01510.1-protein|Name=NO17G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MLMHVWRGGMLVACCTVLAFLDQTHAFFPLSALSSSSSSAAARRPVPSVS
DSHPKPTFSCRLFSSPSVDSEGETTDELSEDGVSLRSLKDVSADSAFLEA
QVIDWLDNEWIPQDCHKEVARLAAGAYIKARDDGIHDLGGVLLHVGTELE
DMDMGDAFVDAWTVANKVSDLLLVRMGREVCCPEPEFTDEQRTLMTEGRG
EREIMASGLRPIGSSGGASSADILIGGGNGGSSLLKGGDAPQLLNPQAPP
AFFTLEAVHTAAEHYVDEFARFDFIRKFLDGHDEAWTEANLIMAIILGFR
FDEWGNVDLEGVNERFRSLAFPPDFRGNEEMRVALDAILREDEDEDKMKG
LEEFLEVMVGKAYYHQMDKGDNPDFACRSTLIKWIYEYDFVNEWPNLPSV
QAVLGVKARIEAKQEEKCKPPTRFLY*
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Synonyms
Publications