NO17G01510.1, NO17G01510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01510.1
Unique NameNO17G01510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1477
Alignment locationchr17:448544..450307 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:448544..450307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01510.1 vs.
Match: EWM24227.1 (hypothetical protein Naga_100020g52 [Nannochloropsis gaditana])

HSP 1 Score: 599.7 bits (1545), Expect = 6.900e-168
Identity = 309/436 (70.87%), Postives = 355/436 (81.42%), Query Frame = 0 
Query:    1 MLMHVWRGGMLVACCTVLAFL---DQTHAFFPLSALSSS--SSSAAARRPVPSVS---DSHPKPTFSCRLFSSPSVDSEGET--TDELSEDGVSLRSLKDVSADSAFLEAQVIDWLDNEWIPQDCHKEVARLAAGAYIKARDDGIHDLGGVLLHVGTELEDMDMGDAFVDAWTVANKVSDLLLVRMGREVCCPEPEFTDEQRTLMTEGRGEREIMASGLRPIGSSGGASSADILIGGGNGGSSLLKGGDAPQLLNPQAPPAFFTLEAVHTAAEHYVDEFARFDFIRKFLDGHDEAWTEANLIMAIILGFRFDEWGNVDLEGVNERFRSLAFPPDFRGNEEMRVALDAILREDEDEDKMKGLEEFLEVMVGKAYYHQMDKGDNPDFACRSTLIKWIYEYDFVNEWPNLPSVQAVLGVKARIEAKQEEKCKPPTRFLY 427
            ML+H+ + G  VA   +LAF    + T AF P+   SS     S +  R VP +    DS      SCR  S  SV+S   +  ++E++EDGVSL+ L+D+ AD+AFLE QV++WLDNEWIPQDCH+EVA++AA AY+KARD+GI DLGGVLLHVGTELEDMDMGDAFVDAW VANKVSDLLL+RMGREVCCPEPEFTDEQR LMTEGRGEREI+ASGL   G+ G  ++    +GGG+GGSSLLK  D PQLLNPQAPPAFFTL+AV  +AE YVDEFARFDFIRKFLDGHDEAW EAN+IMAIILG++FDEWGN++LE V+ERFR LAFPPDFRGNEEMR  LDAILREDEDE+KMKGLEEFLEVMVGKAYYHQ DKGDN DFACR+TLIKWIYEYDFVN+WP LP+VQA+L VKARI+AKQEE  KPP RFLY
Sbjct:    1 MLLHIGKVGRKVAVYFLLAFAFAGEPTQAFLPVLRASSPLLPHSLSVVRHVPDLGLTKDSSSSSKSSCRPVSLSSVNSASPSGGSNEVAEDGVSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCCPEPEFTDEQRVLMTEGRGEREIIASGLLGRGAPGSKAT----LGGGSGGSSLLKDKDVPQLLNPQAPPAFFTLDAVLRSAEQYVDEFARFDFIRKFLDGHDEAWAEANIIMAIILGYKFDEWGNINLEDVHERFRELAFPPDFRGNEEMRAMLDAILREDEDEEKMKGLEEFLEVMVGKAYYHQSDKGDNEDFACRATLIKWIYEYDFVNDWPRLPTVQALLEVKARIDAKQEEN-KPPQRFLY 431
The following BLAST results are available for this feature:
BLAST of NO17G01510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24227.16.900e-16870.87hypothetical protein Naga_100020g52 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01510NO17G01510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01510.1NO17G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01510.1.cds1NO17G01510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01510.1.cds2NO17G01510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01510.1 ID=NO17G01510.1|Name=NO17G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1477bp
ACAGCTTTCTTGCGTCTCCTTCCGTTATGCTCATGCACGTGTGGAGGGGC
GGCATGCTGGTGGCCTGCTGCACGGTGTTGGCTTTCCTAGATCAAACGCA
CGCTTTCTTTCCCCTCTCTGCACTTTCTTCTTCGTCCTCTTCCGCAGCCG
CCCGTCGTCCAGTCCCGTCTGTGTCGGATAGCCACCCCAAGCCCACCTTC
TCCTGCCGGCTCTTCTCCTCTCCCTCTGTGGACTCGGAGGGAGAGACCAC
CGACGAGTTGTCTGAGGATGGAGTGTCCCTTCGGTCGCTCAAAGACGTAA
GCGCAGACTCTGCGTTTCTGGAAGCGCAAGTCATCGACTGGTTAGATAAC
GAATGGATCCCTCAAGATTGCCATAAGGAAGTTGCGCGCTTGGCAGCGGG
AGCATATATCAAGGCACGTGATGATGGCATACATGATTTGGGTGGTGTTT
TGCTGCATGTTGGGACGGAGTTGGAGGACATGGATATGGGGGATGCGTTC
GTGGATGCCTGGACCGTGGCTAACAAGGTGTCGGACCTCTTGCTGGTGCG
CATGGGTCGAGAGGTATGTTGCCCCGAGCCGGAGTTCACGGATGAACAGC
GTACGTTGATGACAGAGGGAAGGGGGGAGAGGGAGATTATGGCGTCGGGT
CTGCGGCCAATTGGGTCGTCGGGTGGGGCAAGTAGCGCTGATATTTTGAT
CGGTGGCGGTAATGGTGGTAGCTCCTTGCTGAAGGGCGGAGATGCACCGC
AGCTTTTGAACCCACAGGCACCCCCGGCTTTTTTCACGCTGGAGGCTGTA
CATACTGCGGCCGAGCATTACGTGGATGAATTCGCACGGTTTGATTTCAT
TCGCAAGTTTTTGGATGGGCACGACGAGGCATGGACCGAGGCCAATCTAA
TCATGGCTATTATTTTAGGGTTTCGTTTCGACGAATGGGGAAATGTGGAT
TTGGAGGGGGTGAATGAGCGTTTTAGATCGTTGGCGTTCCCCCCTGACTT
CCGGGGGAATGAGGAGATGCGGGTAGCGCTGGACGCTATTTTGAGGGAGG
ACGAGGATGAGGATAAGATGAAGGGATTGGAGGAGTTTTTGGAGGTTATG
GTGGGGAAGGCCTACTATCATCAAATGGATAAGGGGGATAACCCGGATTT
TGCGTGTCGCTCAACGCTGATAAAGTGGATTTATGAGTATGATTTTGTGA
ATGAATGGCCTAATCTGCCCAGCGTGCAAGCGGTTTTGGGCGTTAAGGCC
CGCATTGAGGCCAAGCAGGAGGAGAAGTGTAAGCCGCCCACGCGTTTTCT
CTACTAGATAAGCGAGATTTTATGGTAATAGGAACGTAGGCCGCAGAAAA
TGAATTTTGGCGAGTGGGAAGAGTGCGTGGTTGATGAGATGCTTTAGCCT
GTAATTGTAAAAAAATCGGAAAAAGAGGGGGAAAGAATGAGAAATACAGA
AGGCAAGTATCTCCAATGAAGGTGCGA
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protein sequence of NO17G01510.1

>NO17G01510.1-protein ID=NO17G01510.1-protein|Name=NO17G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MLMHVWRGGMLVACCTVLAFLDQTHAFFPLSALSSSSSSAAARRPVPSVS
DSHPKPTFSCRLFSSPSVDSEGETTDELSEDGVSLRSLKDVSADSAFLEA
QVIDWLDNEWIPQDCHKEVARLAAGAYIKARDDGIHDLGGVLLHVGTELE
DMDMGDAFVDAWTVANKVSDLLLVRMGREVCCPEPEFTDEQRTLMTEGRG
EREIMASGLRPIGSSGGASSADILIGGGNGGSSLLKGGDAPQLLNPQAPP
AFFTLEAVHTAAEHYVDEFARFDFIRKFLDGHDEAWTEANLIMAIILGFR
FDEWGNVDLEGVNERFRSLAFPPDFRGNEEMRVALDAILREDEDEDKMKG
LEEFLEVMVGKAYYHQMDKGDNPDFACRSTLIKWIYEYDFVNEWPNLPSV
QAVLGVKARIEAKQEEKCKPPTRFLY*
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mRNA from alignment at chr17:448544..450307+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01510.1 ID=NO17G01510.1|Name=NO17G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp|location=Sequence derived from alignment at chr17:448544..450307+ (Nannochloropsis oceanica)
ACAGCTTTCTTGCGTCTCCTTCCGTTATGCTCATGCACGTGTGGAGGGGC
GGCATGCTGGTGGCCTGCTGCACGGTGTTGGCTTTCCTAGATCAAACGCA
CGCTTTCTTTCCCCTCTCTGCACTTTCTTCTTCGTCCTCTTCCGCAGCCG
CCCGTCGTCCAGGTACGCACGCATTCTATTTGAAGAGGAAGAGCTAGGGG
ATGCTAGGATAGAGAGTCGCCGGGCTTGGAGGACCGCAGTGCTTGGAGTT
GGGTGTGTGGGGGAGAGGAGGTCAAATTGTGTTGCACCTACAAGCTTCGA
TGTTCTCGTTCGATCCCGTCTCCCGGCCTTTTGACTTTTAGATAGATATC
ACTGTTATGCTCAGTGGACTGGATGGCCACTCTCGTCCGCGATGCACAGT
CTCCTCCTTTAATCTAGACTTTCCCCTCACTTTCCCCATTCATACTCAGT
CCCGTCTGTGTCGGATAGCCACCCCAAGCCCACCTTCTCCTGCCGGCTCT
TCTCCTCTCCCTCTGTGGACTCGGAGGGAGAGACCACCGACGAGTTGTCT
GAGGATGGAGTGTCCCTTCGGTCGCTCAAAGACGTAAGCGCAGACTCTGC
GTTTCTGGAAGCGCAAGTCATCGACTGGTTAGATAACGAATGGATCCCTC
AAGATTGCCATAAGGAAGTTGCGCGCTTGGCAGCGGGAGCATATATCAAG
GCACGTGATGATGGCATACATGATTTGGGTGGTGTTTTGCTGCATGTTGG
GACGGAGTTGGAGGACATGGATATGGGGGATGCGTTCGTGGATGCCTGGA
CCGTGGCTAACAAGGTGTCGGACCTCTTGCTGGTGCGCATGGGTCGAGAG
GTATGTTGCCCCGAGCCGGAGTTCACGGATGAACAGCGTACGTTGATGAC
AGAGGGAAGGGGGGAGAGGGAGATTATGGCGTCGGGTCTGCGGCCAATTG
GGTCGTCGGGTGGGGCAAGTAGCGCTGATATTTTGATCGGTGGCGGTAAT
GGTGGTAGCTCCTTGCTGAAGGGCGGAGATGCACCGCAGCTTTTGAACCC
ACAGGCACCCCCGGCTTTTTTCACGCTGGAGGCTGTACATACTGCGGCCG
AGCATTACGTGGATGAATTCGCACGGTTTGATTTCATTCGCAAGTTTTTG
GATGGGCACGACGAGGCATGGACCGAGGCCAATCTAATCATGGCTATTAT
TTTAGGGTTTCGTTTCGACGAATGGGGAAATGTGGATTTGGAGGGGGTGA
ATGAGCGTTTTAGATCGTTGGCGTTCCCCCCTGACTTCCGGGGGAATGAG
GAGATGCGGGTAGCGCTGGACGCTATTTTGAGGGAGGACGAGGATGAGGA
TAAGATGAAGGGATTGGAGGAGTTTTTGGAGGTTATGGTGGGGAAGGCCT
ACTATCATCAAATGGATAAGGGGGATAACCCGGATTTTGCGTGTCGCTCA
ACGCTGATAAAGTGGATTTATGAGTATGATTTTGTGAATGAATGGCCTAA
TCTGCCCAGCGTGCAAGCGGTTTTGGGCGTTAAGGCCCGCATTGAGGCCA
AGCAGGAGGAGAAGTGTAAGCCGCCCACGCGTTTTCTCTACTAGATAAGC
GAGATTTTATGGTAATAGGAACGTAGGCCGCAGAAAATGAATTTTGGCGA
GTGGGAAGAGTGCGTGGTTGATGAGATGCTTTAGCCTGTAATTGTAAAAA
AATCGGAAAAAGAGGGGGAAAGAATGAGAAATACAGAAGGCAAGTATCTC
CAATGAAGGTGCGA
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Coding sequence (CDS) from alignment at chr17:448544..450307+

>NO17G01510.1 ID=NO17G01510.1|Name=NO17G01510.1|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at chr17:448544..450307+ (Nannochloropsis oceanica)
ATGCTCATGCACGTGTGGAGGGGCGGCATGCTGGTGGCCTGCTGCACGGT
GTTGGCTTTCCTAGATCAAACGCACGCTTTCTTTCCCCTCTCTGCACTTT
CTTCTTCGTCCTCTTCCGCAGCCGCCCGTCGTCCAGTCCCGTCTGTGTCG
GATAGCCACCCCAAGCCCACCTTCTCCTGCCGGCTCTTCTCCTCTCCCTC
TGTGGACTCGGAGGGAGAGACCACCGACGAGTTGTCTGAGGATGGAGTGT
CCCTTCGGTCGCTCAAAGACGTAAGCGCAGACTCTGCGTTTCTGGAAGCG
CAAGTCATCGACTGGTTAGATAACGAATGGATCCCTCAAGATTGCCATAA
GGAAGTTGCGCGCTTGGCAGCGGGAGCATATATCAAGGCACGTGATGATG
GCATACATGATTTGGGTGGTGTTTTGCTGCATGTTGGGACGGAGTTGGAG
GACATGGATATGGGGGATGCGTTCGTGGATGCCTGGACCGTGGCTAACAA
GGTGTCGGACCTCTTGCTGGTGCGCATGGGTCGAGAGGTATGTTGCCCCG
AGCCGGAGTTCACGGATGAACAGCGTACGTTGATGACAGAGGGAAGGGGG
GAGAGGGAGATTATGGCGTCGGGTCTGCGGCCAATTGGGTCGTCGGGTGG
GGCAAGTAGCGCTGATATTTTGATCGGTGGCGGTAATGGTGGTAGCTCCT
TGCTGAAGGGCGGAGATGCACCGCAGCTTTTGAACCCACAGGCACCCCCG
GCTTTTTTCACGCTGGAGGCTGTACATACTGCGGCCGAGCATTACGTGGA
TGAATTCGCACGGTTTGATTTCATTCGCAAGTTTTTGGATGGGCACGACG
AGGCATGGACCGAGGCCAATCTAATCATGGCTATTATTTTAGGGTTTCGT
TTCGACGAATGGGGAAATGTGGATTTGGAGGGGGTGAATGAGCGTTTTAG
ATCGTTGGCGTTCCCCCCTGACTTCCGGGGGAATGAGGAGATGCGGGTAG
CGCTGGACGCTATTTTGAGGGAGGACGAGGATGAGGATAAGATGAAGGGA
TTGGAGGAGTTTTTGGAGGTTATGGTGGGGAAGGCCTACTATCATCAAAT
GGATAAGGGGGATAACCCGGATTTTGCGTGTCGCTCAACGCTGATAAAGT
GGATTTATGAGTATGATTTTGTGAATGAATGGCCTAATCTGCCCAGCGTG
CAAGCGGTTTTGGGCGTTAAGGCCCGCATTGAGGCCAAGCAGGAGGAGAA
GTGTAAGCCGCCCACGCGTTTTCTCTACTAG
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Synonyms
Publications